Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48496 * 109.47156 * 269.99700 * 3 2 1 5 5 H 1.48496 * 109.47125 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.46909 * 149.99567 * 3 2 1 7 7 C 1.37878 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99725 * 173.55698 * 7 2 1 9 9 C 1.50703 * 119.99984 * 353.83591 * 7 2 1 10 10 H 1.09003 * 109.47007 * 358.05488 * 9 7 2 11 11 C 1.52997 * 109.46963 * 118.05010 * 9 7 2 12 12 C 1.54269 * 110.03101 * 57.44857 * 11 9 7 13 13 C 1.54885 * 104.19662 * 217.10273 * 12 11 9 14 14 C 1.54889 * 102.75125 * 37.93913 * 13 12 11 15 15 C 1.53868 * 110.03553 * 300.27940 * 11 9 7 16 16 N 1.46897 * 109.47130 * 238.05711 * 9 7 2 17 17 C 1.47477 * 110.99846 * 155.97254 * 16 9 7 18 18 C 1.53517 * 87.93019 * 221.29318 * 17 16 9 19 19 N 1.46904 * 114.16952 * 139.67152 * 18 17 16 20 20 C 1.47475 * 111.00218 * 59.99791 * 16 9 7 21 21 H 0.97006 * 120.00059 * 5.03632 * 1 2 3 22 22 H 1.09008 * 110.01571 * 178.88670 * 11 9 7 23 23 H 1.08996 * 110.48432 * 335.78184 * 12 11 9 24 24 H 1.08995 * 110.48409 * 98.42271 * 12 11 9 25 25 H 1.09005 * 110.75375 * 279.62910 * 13 12 11 26 26 H 1.08999 * 110.91765 * 156.33347 * 13 12 11 27 27 H 1.08992 * 110.49147 * 203.38363 * 14 13 12 28 28 H 1.08995 * 110.59819 * 80.78923 * 14 13 12 29 29 H 1.09001 * 110.03162 * 238.56816 * 15 11 9 30 30 H 1.08991 * 110.03661 * 359.97438 * 15 11 9 31 31 H 1.08999 * 113.47913 * 336.05761 * 17 16 9 32 32 H 1.09000 * 113.47777 * 106.53080 * 17 16 9 33 33 H 1.08997 * 114.16985 * 272.37947 * 18 17 16 34 34 H 1.00894 * 111.00017 * 86.16288 * 19 18 17 35 35 H 1.00900 * 110.99840 * 210.11499 * 19 18 17 36 36 H 1.08995 * 113.47800 * 253.47017 * 20 16 9 37 37 H 1.09006 * 113.47831 * 23.87809 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1970 -0.1044 9 6 1.2576 -2.4953 0.1413 10 1 0.1938 -2.2921 0.2648 11 6 1.4721 -3.3448 -1.1130 12 6 2.9794 -3.5865 -1.3360 13 6 3.1492 -3.5326 -2.8746 14 6 2.1731 -2.4030 -3.2869 15 6 0.9595 -2.5922 -2.3534 16 7 1.7569 -3.2220 1.3162 17 6 0.7410 -4.1606 1.8282 18 6 1.1378 -3.7290 3.2470 19 7 0.0034 -3.5699 4.1667 20 6 1.5662 -2.4318 2.5467 21 1 -0.4850 0.8368 -0.0737 22 1 0.9514 -4.2971 -1.0124 23 1 3.5662 -2.8012 -0.8596 24 1 3.2692 -4.5654 -0.9543 25 1 2.8579 -4.4797 -3.3288 26 1 4.1736 -3.2756 -3.1442 27 1 1.8745 -2.5181 -4.3288 28 1 2.6282 -1.4256 -3.1272 29 1 0.1905 -3.1797 -2.8551 30 1 0.5574 -1.6221 -2.0618 31 1 -0.2789 -3.8853 1.5599 32 1 0.9670 -5.2049 1.6128 33 1 1.9631 -4.2998 3.6727 34 1 -0.2374 -4.4489 4.5993 35 1 0.1982 -2.8657 4.8626 36 1 2.4914 -2.0110 2.9403 37 1 0.7671 -1.6945 2.4699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = 3.375692 kcal Electronic energy + Delta-G solvation = -16523.622307 eV Core-core repulsion = 14107.229622 eV Total energy + Delta-G solvation = -2416.392685 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93312 -38.66653 -35.00967 -33.67186 -31.23345 -29.25933 -27.87495 -26.65262 -26.14870 -22.81085 -21.37095 -20.31488 -20.13116 -18.25751 -16.93795 -16.76227 -16.63668 -16.37529 -15.78371 -15.40251 -14.66967 -14.25290 -14.00518 -13.77978 -13.32631 -13.21138 -12.83123 -12.63226 -12.49659 -12.11546 -11.72308 -11.69829 -11.60693 -11.33996 -11.20953 -11.16396 -10.91040 -10.60275 -10.43934 -9.63628 -9.35884 -8.06696 -6.13957 1.37515 1.41062 1.49172 2.42948 3.13855 3.51734 3.58988 3.85881 4.07270 4.10349 4.18387 4.26359 4.64097 4.76464 4.81375 4.84527 4.86878 4.96480 4.98285 5.01957 5.12298 5.13275 5.20967 5.31611 5.33621 5.38234 5.58300 5.63826 5.73176 5.75235 5.87191 6.07045 6.31738 6.42354 6.67922 6.68838 7.04308 7.52399 8.99370 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.013519 C = 0.008994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.319534 B = 2070.634792 C = 3112.471657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.485 4.485 8 H 0.049 0.951 9 C 0.178 3.822 10 H 0.008 0.992 11 C -0.067 4.067 12 C -0.093 4.093 13 C -0.116 4.116 14 C -0.111 4.111 15 C -0.111 4.111 16 N -0.477 5.477 17 C 0.008 3.992 18 C 0.066 3.934 19 N -0.844 5.844 20 C 0.035 3.965 21 H 0.258 0.742 22 H 0.033 0.967 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.352 0.648 35 H 0.349 0.651 36 H 0.062 0.938 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -7.143 1.684 8.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.172 4.172 3 Si 0.762 3.238 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.524 4.524 8 H 0.067 0.933 9 C 0.070 3.930 10 H 0.026 0.974 11 C -0.087 4.087 12 C -0.131 4.131 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.149 4.149 16 N -0.200 5.200 17 C -0.122 4.122 18 C -0.045 4.045 19 N -0.377 5.377 20 C -0.095 4.095 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.080 0.920 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.380 -7.018 0.872 7.838 hybrid contribution -0.159 1.336 0.834 1.583 sum 3.221 -5.682 1.706 6.750 Atomic orbital electron populations 1.70017 1.06997 1.27100 1.52035 1.25527 0.95275 1.01584 0.94836 0.85898 0.78995 0.80758 0.78154 1.20295 1.21468 1.19486 1.20994 0.92998 0.90424 1.48023 0.93323 1.19930 0.94096 0.91295 0.87631 0.97360 1.21586 0.96088 0.95639 0.95372 1.22119 0.95660 0.99988 0.95296 1.22472 0.98857 0.98249 0.95769 1.22200 0.95990 0.98472 0.98195 1.22001 0.97305 1.00238 0.95392 1.68915 1.37980 1.10693 1.02432 1.23738 0.95042 0.98704 0.94715 1.22920 0.92422 0.97071 0.92124 1.58704 1.40071 1.13912 1.25032 1.23268 0.99027 0.95091 0.92131 0.93245 0.94828 0.92748 0.92849 0.90961 0.91335 0.91268 0.93635 0.93639 0.92965 0.94015 0.90130 0.89712 0.83464 0.83726 0.91983 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.94 12.39 21.45 0.27 -52.68 16 2 C 0.03 1.46 5.05 84.65 0.43 1.89 16 3 Si 0.94 43.64 29.55 68.60 2.03 45.66 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.49 -25.67 5.95 25.60 0.15 -25.52 16 8 H 0.05 2.64 6.41 -2.91 -0.02 2.62 16 9 C 0.18 8.76 1.15 44.17 0.05 8.82 16 10 H 0.01 0.49 6.31 -2.39 -0.02 0.47 16 11 C -0.07 -2.94 2.87 -10.07 -0.03 -2.97 16 12 C -0.09 -3.63 5.88 31.67 0.19 -3.44 16 13 C -0.12 -3.81 6.91 31.88 0.22 -3.59 16 14 C -0.11 -4.08 6.83 31.67 0.22 -3.86 16 15 C -0.11 -4.79 6.02 31.32 0.19 -4.60 16 16 N -0.48 -20.91 5.82 -906.94 -5.28 -26.19 16 17 C 0.01 0.31 7.31 83.58 0.61 0.92 16 18 C 0.07 2.19 5.31 45.37 0.24 2.43 16 19 N -0.84 -24.02 9.61 -167.93 -1.61 -25.63 16 20 C 0.03 1.47 6.67 83.58 0.56 2.02 16 21 H 0.26 14.35 8.32 -92.70 -0.77 13.58 16 22 H 0.03 1.42 8.04 -2.38 -0.02 1.40 16 23 H 0.05 2.38 5.90 -2.39 -0.01 2.37 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 2.67 6.53 -2.39 -0.02 2.65 16 31 H 0.04 1.81 7.54 -2.39 -0.02 1.79 16 32 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.35 7.83 9.08 -89.70 -0.81 7.01 16 35 H 0.35 8.88 9.07 -89.69 -0.81 8.07 16 36 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.04 2.04 7.89 -2.38 -0.02 2.02 16 Total: -1.00 -59.34 287.00 -2.35 -61.70 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.57 Total: 25.04 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 2.82 Total: -27.90 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -6.63 Total: -104.50 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -59.34 -2.35 -61.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.073 kcal (2) G-P(sol) polarization free energy of solvation -59.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds