Wall clock time and date at job start Mon Mar 30 2020 03:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47387 * 240.00011 * 3 2 1 5 5 H 1.48505 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47063 * 119.99694 * 3 2 1 7 7 C 1.37879 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99956 * 185.32575 * 7 2 1 9 9 C 1.50701 * 119.99567 * 5.33057 * 7 2 1 10 10 H 1.09000 * 109.47182 * 355.73999 * 9 7 2 11 11 C 1.52994 * 109.46743 * 235.74058 * 9 7 2 12 12 C 1.53000 * 117.49814 * 130.75472 * 11 9 7 13 13 C 1.53002 * 117.50139 * 62.09396 * 11 9 7 14 14 N 1.46900 * 109.47162 * 115.74449 * 9 7 2 15 15 C 1.46851 * 110.99704 * 299.99556 * 14 9 7 16 16 C 1.53036 * 109.51325 * 174.16547 * 15 14 9 17 17 C 1.53099 * 109.28997 * 59.18659 * 16 15 14 18 18 N 1.46904 * 109.52543 * 182.43606 * 17 16 15 19 19 C 1.53120 * 109.15214 * 302.33746 * 17 16 15 20 20 C 1.46846 * 111.00067 * 175.78589 * 14 9 7 21 21 H 0.97002 * 119.99879 * 0.02562 * 1 2 3 22 22 H 1.09006 * 115.55271 * 276.42002 * 11 9 7 23 23 H 1.08994 * 117.50407 * 359.97438 * 12 11 9 24 24 H 1.09012 * 117.49818 * 145.02200 * 12 11 9 25 25 H 1.08996 * 117.49964 * 214.97740 * 13 11 9 26 26 H 1.08997 * 117.49575 * 359.97356 * 13 11 9 27 27 H 1.08995 * 109.46389 * 294.18035 * 15 14 9 28 28 H 1.08999 * 109.46215 * 54.16150 * 15 14 9 29 29 H 1.09001 * 109.50129 * 179.11650 * 16 15 14 30 30 H 1.08996 * 109.50607 * 299.23137 * 16 15 14 31 31 H 1.09002 * 109.57785 * 62.27260 * 17 16 15 32 32 H 1.00900 * 110.99397 * 299.67663 * 18 17 16 33 33 H 1.00895 * 111.00037 * 63.63146 * 18 17 16 34 34 H 1.08997 * 109.50483 * 297.71468 * 19 17 16 35 35 H 1.08999 * 109.53095 * 177.61740 * 19 17 16 36 36 H 1.08991 * 109.46226 * 305.85455 * 20 14 9 37 37 H 1.08999 * 109.46020 * 65.83649 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0810 -1.1960 0.0873 9 6 1.2558 -2.4964 -0.1201 10 1 0.1836 -2.3003 -0.1210 11 6 1.6083 -3.3987 1.0640 12 6 0.4513 -4.0436 1.8297 13 6 1.2466 -2.9001 2.4645 14 7 1.6328 -3.1636 -1.3734 15 6 1.3084 -2.3247 -2.5343 16 6 1.8445 -2.9840 -3.8071 17 6 1.2131 -4.3700 -3.9633 18 7 1.7679 -5.0311 -5.1520 19 6 1.5250 -5.2071 -2.7197 20 6 0.9982 -4.4837 -1.4783 21 1 -0.4850 0.8401 -0.0004 22 1 2.5258 -3.9776 0.9573 23 1 -0.5610 -3.8247 1.4902 24 1 0.6077 -5.0466 2.2271 25 1 1.9259 -3.1511 3.2792 26 1 0.7579 -1.9289 2.5423 27 1 0.2269 -2.2131 -2.6109 28 1 1.7672 -1.3435 -2.4128 29 1 1.5900 -2.3691 -4.6703 30 1 2.9277 -3.0833 -3.7370 31 1 0.1333 -4.2691 -4.0731 32 1 1.5747 -4.4970 -5.9860 33 1 2.7583 -5.1922 -5.0471 34 1 2.6032 -5.3414 -2.6325 35 1 1.0428 -6.1809 -2.8056 36 1 1.2314 -5.0703 -0.5898 37 1 -0.0818 -4.3620 -1.5601 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:39 Heat of formation + Delta-G solvation = 17.667420 kcal Electronic energy + Delta-G solvation = -16348.176079 eV Core-core repulsion = 13932.403130 eV Total energy + Delta-G solvation = -2415.772949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.59567 -36.48920 -33.95351 -32.46732 -30.12103 -29.44242 -26.38007 -23.52881 -22.38226 -21.40602 -21.31844 -19.25695 -18.89767 -16.38506 -15.75934 -15.35021 -14.65352 -14.32412 -13.99786 -13.54405 -13.44363 -12.84555 -12.62319 -12.35166 -11.71219 -11.50920 -11.36868 -10.91440 -10.67580 -10.64361 -10.54996 -10.39769 -10.28672 -9.86243 -9.74192 -9.35669 -9.19014 -8.71311 -8.50202 -8.34365 -7.02054 -6.05110 -4.08973 3.28511 3.33818 3.37043 4.37423 4.76923 4.81705 5.03005 5.22852 5.39712 5.40936 5.70093 5.83988 5.88606 6.00620 6.07480 6.12918 6.25042 6.27855 6.33622 6.38980 6.46645 6.59932 6.65244 6.70122 6.90487 6.91561 7.00514 7.16076 7.33644 7.34017 7.59892 7.63150 7.86109 8.11870 8.41391 8.69890 9.06478 9.54468 10.99866 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.010581 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.467719 B = 2645.601716 C = 3558.103621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.489 4.489 8 H 0.057 0.943 9 C 0.221 3.779 10 H 0.045 0.955 11 C -0.112 4.112 12 C -0.207 4.207 13 C -0.165 4.165 14 N -0.534 5.534 15 C 0.080 3.920 16 C -0.148 4.148 17 C 0.088 3.912 18 N -0.848 5.848 19 C -0.104 4.104 20 C 0.054 3.946 21 H 0.262 0.738 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.018 0.982 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.335 0.665 33 H 0.336 0.664 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 -6.457 -4.277 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.075 0.925 9 C 0.116 3.884 10 H 0.063 0.937 11 C -0.131 4.131 12 C -0.244 4.244 13 C -0.202 4.202 14 N -0.260 5.260 15 C -0.049 4.049 16 C -0.188 4.188 17 C -0.023 4.023 18 N -0.375 5.375 19 C -0.142 4.142 20 C -0.076 4.076 21 H 0.072 0.928 22 H 0.103 0.897 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.036 0.964 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.670 -7.013 -4.089 8.288 hybrid contribution 0.139 1.972 -0.060 1.978 sum 1.808 -5.042 -4.150 6.775 Atomic orbital electron populations 1.69899 1.05912 1.26805 1.50544 1.25001 0.94806 0.99186 0.94663 0.86703 0.79678 0.83124 0.78815 1.20180 1.21432 1.20143 1.20859 0.93577 0.89440 1.48892 0.92509 1.19122 0.97035 0.89912 0.82311 0.93676 1.22381 0.96374 1.00212 0.94126 1.23023 0.97451 0.96352 1.07546 1.22681 1.02974 0.98361 0.96227 1.62301 1.58478 1.01586 1.03631 1.21617 0.97166 0.97767 0.88391 1.22451 1.01022 0.96863 0.98449 1.21532 0.98685 0.92073 0.89990 1.59027 1.19990 1.53742 1.04777 1.21572 1.01334 0.97667 0.93635 1.22002 0.95589 0.93146 0.96829 0.92820 0.89686 0.89884 0.90812 0.90812 0.88474 0.96387 0.89678 0.93036 0.91860 0.91021 0.85362 0.85172 0.91904 0.92225 0.91146 0.96481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 12.62 55.43 0.70 -24.14 16 2 C 0.07 1.76 5.35 -17.82 -0.10 1.66 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.49 -12.89 6.75 -34.44 -0.23 -13.12 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.22 5.34 2.00 -68.87 -0.14 5.20 16 10 H 0.05 1.25 6.69 -51.93 -0.35 0.90 16 11 C -0.11 -2.41 3.69 -90.62 -0.33 -2.74 16 12 C -0.21 -3.97 9.91 -26.69 -0.26 -4.24 16 13 C -0.16 -3.40 9.93 -26.69 -0.27 -3.66 16 14 N -0.53 -11.56 4.52 -228.09 -1.03 -12.59 16 15 C 0.08 1.69 5.27 -3.83 -0.02 1.67 16 16 C -0.15 -2.49 5.66 -26.66 -0.15 -2.64 16 17 C 0.09 1.36 3.32 -67.60 -0.22 1.14 16 18 N -0.85 -10.94 9.26 -4.57 -0.04 -10.99 16 19 C -0.10 -1.66 5.64 -26.65 -0.15 -1.81 16 20 C 0.05 1.01 5.23 -3.84 -0.02 0.99 16 21 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 22 H 0.08 1.80 8.13 -51.93 -0.42 1.37 16 23 H 0.08 1.67 8.06 -51.93 -0.42 1.25 16 24 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 25 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.10 2.25 8.14 -51.93 -0.42 1.82 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 2.03 6.81 -51.93 -0.35 1.68 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.33 3.79 9.04 -39.29 -0.36 3.44 16 33 H 0.34 4.01 8.98 -39.29 -0.35 3.65 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.30 6.51 -51.93 -0.34 0.96 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 291.79 15.07 4.40 4.40 Total: -1.00 -26.86 291.79 -9.25 -36.11 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.36 Total: 8.91 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.90 Total: -17.56 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.37 Total: -47.72 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.86 -9.25 -36.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.778 kcal (2) G-P(sol) polarization free energy of solvation -26.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds