Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.47733 * 111.00270 * 290.71231 * 11 10 9 13 13 C 1.52551 * 111.93606 * 178.93384 * 12 11 10 14 14 C 1.53946 * 111.45236 * 52.92306 * 13 12 11 15 15 C 1.51662 * 106.68961 * 305.01986 * 14 13 12 16 16 H 1.09005 * 110.69679 * 303.30455 * 15 14 13 17 17 C 1.52410 * 117.03917 * 176.18789 * 15 14 13 18 18 N 1.48625 * 105.88795 * 215.43417 * 17 15 14 19 19 C 1.49795 * 108.62543 * 3.80358 * 18 17 15 20 20 C 1.45290 * 110.99902 * 170.00034 * 11 10 9 21 21 H 1.09002 * 110.27984 * 69.27927 * 20 11 10 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.09002 * 108.99105 * 299.56798 * 12 11 10 28 28 H 1.09002 * 108.98711 * 58.30606 * 12 11 10 29 29 H 1.08997 * 109.08398 * 292.41519 * 13 12 11 30 30 H 1.08999 * 109.02802 * 173.39567 * 13 12 11 31 31 H 1.08999 * 110.00642 * 185.72212 * 14 13 12 32 32 H 1.09005 * 110.08737 * 64.36144 * 14 13 12 33 33 H 1.08995 * 110.17039 * 334.53939 * 17 15 14 34 34 H 1.09007 * 110.16845 * 96.25645 * 17 15 14 35 35 H 1.00901 * 110.99974 * 241.10740 * 18 17 15 36 36 H 1.08998 * 110.39615 * 265.09204 * 19 18 17 37 37 H 1.09000 * 111.18983 * 141.83774 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 0.8242 -5.1487 1.2923 13 6 0.0327 -6.4527 1.3069 14 6 0.9113 -7.6492 0.8990 15 6 1.5126 -7.3079 -0.4509 16 1 0.7297 -7.0876 -1.1767 17 6 2.5041 -8.3044 -1.0396 18 7 3.5229 -7.4912 -1.7536 19 6 3.2206 -6.0413 -1.5295 20 6 2.4072 -6.0531 -0.2338 21 1 3.0640 -6.1983 0.6240 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6247 -2.5564 0.8919 25 1 2.8714 -3.6047 -0.8890 26 1 2.8726 -3.6039 0.8910 27 1 1.5673 -5.1759 2.0893 28 1 0.1422 -4.3179 1.4736 29 1 -0.8025 -6.3704 0.6114 30 1 -0.3554 -6.6216 2.3113 31 1 0.3018 -8.5493 0.8190 32 1 1.7032 -7.7996 1.6328 33 1 2.9745 -8.8816 -0.2436 34 1 1.9974 -8.9711 -1.7375 35 1 3.5392 -7.7146 -2.7374 36 1 2.6257 -5.6457 -2.3526 37 1 4.1358 -5.4630 -1.4030 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299892530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = -24.817970 kcal Electronic energy + Delta-G solvation = -15991.837599 eV Core-core repulsion = 13574.222345 eV Total energy + Delta-G solvation = -2417.615254 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15326 -37.36827 -35.58951 -34.45258 -31.43218 -30.58016 -28.76160 -26.81399 -24.94039 -23.09545 -22.31311 -21.01645 -20.88511 -18.62160 -17.45736 -16.53606 -16.37467 -16.01002 -15.64956 -15.37014 -14.95411 -14.52195 -14.37471 -13.99518 -13.61824 -13.45783 -13.21160 -12.95029 -12.81121 -12.46103 -12.37056 -12.03355 -11.91265 -11.71294 -11.60751 -11.41524 -11.19350 -10.84310 -10.55321 -9.45445 -9.29707 -8.21701 -6.33418 1.39010 1.40714 1.51752 2.38780 2.85188 3.11523 3.31826 3.46220 3.83096 3.89445 4.13696 4.18740 4.26305 4.36189 4.41735 4.53316 4.56682 4.68946 4.78010 4.83313 4.91343 4.94450 5.00199 5.04516 5.09394 5.20619 5.24400 5.42177 5.47769 5.61927 5.68437 5.78261 6.04967 6.28146 6.30852 6.46205 6.83333 7.35831 8.90467 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.041226 B = 0.006362 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.022475 B = 4400.129358 C = 4895.223922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.040 3.960 10 C 0.076 3.924 11 N -0.524 5.524 12 C 0.049 3.951 13 C -0.110 4.110 14 C -0.097 4.097 15 C -0.105 4.105 16 H 0.070 0.930 17 C 0.058 3.942 18 N -0.688 5.688 19 C 0.059 3.941 20 C 0.060 3.940 21 H 0.038 0.962 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.008 1.008 25 H 0.064 0.936 26 H 0.016 0.984 27 H 0.025 0.975 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.350 0.650 36 H 0.047 0.953 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.317 -16.628 -0.262 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.002 3.998 10 C -0.052 4.052 11 N -0.249 5.249 12 C -0.078 4.078 13 C -0.148 4.148 14 C -0.134 4.134 15 C -0.125 4.125 16 H 0.089 0.911 17 C -0.070 4.070 18 N -0.318 5.318 19 C -0.070 4.070 20 C -0.050 4.050 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.011 0.989 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.166 0.834 36 H 0.065 0.935 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.315 -16.549 -0.154 16.879 hybrid contribution -0.064 1.519 0.087 1.523 sum 3.251 -15.030 -0.067 15.378 Atomic orbital electron populations 1.70108 1.07836 1.27819 1.51378 1.25964 0.95752 1.03325 0.94537 0.85426 0.78611 0.78288 0.78587 1.19633 1.20597 1.18791 1.21622 0.93475 0.92319 1.51040 0.92302 1.18872 0.94084 0.91874 0.94926 1.22024 0.95436 0.88846 0.98889 1.62616 1.28270 1.01529 1.32462 1.22191 0.97500 0.99025 0.89110 1.21591 0.98176 0.92524 1.02507 1.21355 0.99213 0.97925 0.94949 1.22150 0.97536 0.94337 0.98468 0.91110 1.22371 0.90957 0.94931 0.98789 1.62518 1.49228 1.02833 1.17262 1.22529 0.98247 0.90130 0.96098 1.22442 0.93398 0.92047 0.97112 0.94402 0.92710 0.99028 0.98921 0.91726 0.96602 0.95655 0.92672 0.91962 0.89682 0.89108 0.91517 0.90082 0.90405 0.83393 0.93462 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 2.20 4.97 29.85 0.15 2.35 16 10 C 0.08 3.36 4.78 86.30 0.41 3.77 16 11 N -0.52 -19.79 4.72 -868.25 -4.10 -23.88 16 12 C 0.05 1.72 5.15 85.99 0.44 2.17 16 13 C -0.11 -2.84 5.98 30.76 0.18 -2.66 16 14 C -0.10 -2.05 5.74 30.47 0.17 -1.87 16 15 C -0.11 -2.56 2.50 -10.52 -0.03 -2.59 16 16 H 0.07 1.91 8.14 -2.38 -0.02 1.90 16 17 C 0.06 1.16 7.30 85.77 0.63 1.79 16 18 N -0.69 -15.78 7.47 -503.64 -3.76 -19.54 16 19 C 0.06 1.69 6.38 85.73 0.55 2.24 16 20 C 0.06 1.85 1.98 46.12 0.09 1.94 16 21 H 0.04 1.23 7.91 -2.39 -0.02 1.22 16 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H -0.01 -0.44 6.62 -2.39 -0.02 -0.46 16 25 H 0.06 2.80 7.06 -2.39 -0.02 2.79 16 26 H 0.02 0.71 8.08 -2.39 -0.02 0.69 16 27 H 0.03 0.87 8.07 -2.39 -0.02 0.85 16 28 H 0.05 2.23 6.51 -2.39 -0.02 2.21 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.38 8.06 -2.38 -0.02 1.36 16 33 H 0.08 1.53 8.06 -2.39 -0.02 1.51 16 34 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.35 6.58 8.94 -89.69 -0.80 5.78 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 2.17 8.05 -2.39 -0.02 2.15 16 Total: -1.00 -65.47 286.09 -2.02 -67.49 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.23 Total: 10.43 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 3.30 Total: -23.98 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -7.57 Total: -100.84 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.47 -2.02 -67.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299892530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.675 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds