Wall clock time and date at job start Mon Mar 30 2020 03:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99748 * 2 1 4 4 H 1.48497 * 109.46838 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46955 * 299.99721 * 3 2 1 6 6 H 1.48503 * 109.47327 * 59.99444 * 3 2 1 7 7 C 1.37878 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99899 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47163 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.47206 * 180.02562 * 10 9 7 12 12 C 1.46324 * 111.00059 * 47.43848 * 11 10 9 13 13 C 1.53327 * 108.10693 * 184.44798 * 12 11 10 14 14 C 1.52408 * 108.32026 * 294.31478 * 13 12 11 15 15 C 1.51882 * 112.04470 * 56.67989 * 14 13 12 16 16 H 1.08996 * 109.84925 * 86.14387 * 15 14 13 17 17 C 1.54968 * 108.02748 * 206.33780 * 15 14 13 18 18 N 1.47746 * 105.14821 * 92.95240 * 17 15 14 19 19 C 1.47609 * 107.58285 * 30.14193 * 18 17 15 20 20 C 1.43696 * 110.99576 * 176.61723 * 11 10 9 21 21 H 1.09000 * 106.35434 * 75.15688 * 20 11 10 22 22 H 0.97008 * 120.00146 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47709 * 59.99864 * 9 7 2 24 24 H 1.09008 * 109.47625 * 299.99801 * 9 7 2 25 25 H 1.08995 * 109.47400 * 59.99552 * 10 9 7 26 26 H 1.09009 * 109.46828 * 299.99828 * 10 9 7 27 27 H 1.08998 * 109.73140 * 304.09940 * 12 11 10 28 28 H 1.08994 * 109.73833 * 64.79584 * 12 11 10 29 29 H 1.08993 * 109.69432 * 54.02662 * 13 12 11 30 30 H 1.08997 * 109.68974 * 174.61261 * 13 12 11 31 31 H 1.08997 * 108.96640 * 177.33559 * 14 13 12 32 32 H 1.08995 * 108.96902 * 296.10282 * 14 13 12 33 33 H 1.09007 * 110.30475 * 211.87257 * 17 15 14 34 34 H 1.08996 * 110.30645 * 334.02779 * 17 15 14 35 35 H 1.00901 * 111.00023 * 268.52792 * 18 17 15 36 36 H 1.08992 * 109.96940 * 221.78189 * 19 18 17 37 37 H 1.08999 * 109.96195 * 100.52755 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5108 -4.9342 0.0012 12 6 0.4496 -4.9266 -1.0061 13 6 -0.3418 -6.2332 -0.8745 14 6 0.5781 -7.3900 -1.2463 15 6 1.8356 -7.4147 -0.3949 16 1 1.6462 -7.9610 0.5291 17 6 2.9529 -8.1142 -1.2097 18 7 3.6697 -7.0215 -1.8990 19 6 3.5758 -5.8196 -1.0472 20 6 2.4133 -6.0497 -0.0768 21 1 2.8647 -6.1490 0.9104 22 1 -0.4851 0.8401 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8714 -3.6039 0.8922 26 1 2.8727 -3.6046 -0.8878 27 1 -0.2120 -4.0769 -0.8372 28 1 0.8878 -4.8604 -2.0019 29 1 -0.6854 -6.3526 0.1529 30 1 -1.1980 -6.2134 -1.5488 31 1 0.0401 -8.3282 -1.1107 32 1 0.8630 -7.2936 -2.2940 33 1 3.6293 -8.6488 -0.5427 34 1 2.5179 -8.7994 -1.9372 35 1 3.2753 -6.8495 -2.8116 36 1 3.3788 -4.9418 -1.6625 37 1 4.5035 -5.6842 -0.4912 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299892531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:00 Heat of formation + Delta-G solvation = -0.340066 kcal Electronic energy + Delta-G solvation = -16181.643967 eV Core-core repulsion = 13765.090155 eV Total energy + Delta-G solvation = -2416.553812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23488 -36.00834 -34.01147 -32.76028 -29.94244 -29.47572 -27.28125 -25.19404 -23.61076 -22.11379 -21.59593 -19.72006 -18.27896 -16.79061 -16.20181 -15.78236 -14.88665 -14.54048 -14.35732 -14.19782 -13.54323 -13.16576 -12.74058 -12.44932 -12.08046 -12.04273 -11.62575 -11.34563 -11.16194 -11.02049 -10.94302 -10.68511 -10.54797 -10.24591 -9.97127 -9.83250 -9.34166 -9.08706 -8.60987 -8.34597 -7.49063 -6.01932 -4.04125 3.30300 3.37882 3.42030 4.16316 4.42207 4.56959 4.69001 4.79611 5.00584 5.18993 5.30119 5.34413 5.45472 5.48111 5.56695 5.72611 5.77309 5.87882 5.98792 6.07439 6.11626 6.16762 6.30440 6.33547 6.45459 6.56911 6.63407 6.82353 6.94055 7.32314 7.54164 7.66054 7.84665 7.93668 8.04704 8.41543 9.02863 9.59867 11.09499 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.044954 B = 0.006556 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.709909 B = 4269.551725 C = 4693.243950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.022 3.978 10 C 0.063 3.937 11 N -0.538 5.538 12 C 0.059 3.941 13 C -0.118 4.118 14 C -0.109 4.109 15 C -0.111 4.111 16 H 0.080 0.920 17 C 0.049 3.951 18 N -0.679 5.679 19 C 0.011 3.989 20 C 0.079 3.921 21 H 0.064 0.936 22 H 0.260 0.740 23 H 0.020 0.980 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.028 0.972 27 H 0.094 0.906 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.334 0.666 36 H 0.072 0.928 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 -14.601 -2.821 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.063 4.063 11 N -0.262 5.262 12 C -0.069 4.069 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.131 4.131 16 H 0.098 0.902 17 C -0.081 4.081 18 N -0.305 5.305 19 C -0.121 4.121 20 C -0.033 4.033 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.113 0.887 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.091 0.909 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.408 -14.734 -2.191 15.089 hybrid contribution -0.061 1.299 -0.795 1.524 sum 2.347 -13.435 -2.987 13.961 Atomic orbital electron populations 1.69978 1.06033 1.26510 1.50797 1.24992 0.94832 0.99216 0.95268 0.86539 0.80124 0.83776 0.77589 1.19736 1.21033 1.20963 1.21218 0.93057 0.90972 1.50707 0.92685 1.19228 0.94089 0.90432 0.97770 1.22392 0.97115 0.87568 0.99236 1.60177 1.13831 1.02621 1.49543 1.22066 0.94077 0.98262 0.92453 1.21545 0.97459 0.94497 1.02131 1.21224 0.95705 0.98964 0.98807 1.21838 0.95893 0.95833 0.99560 0.90177 1.23075 0.93599 0.94309 0.97087 1.62001 1.56800 1.06220 1.05526 1.23377 0.99244 0.92939 0.96500 1.21188 0.91846 0.90719 0.99517 0.91799 0.93037 0.96201 0.95738 0.92008 0.95440 0.88734 0.95922 0.91061 0.91786 0.92237 0.92965 0.90719 0.91245 0.85136 0.90940 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.57 4.29 -27.89 -0.12 0.45 16 10 C 0.06 1.32 4.63 -3.82 -0.02 1.31 16 11 N -0.54 -9.81 4.55 -230.14 -1.05 -10.85 16 12 C 0.06 1.02 4.97 -3.97 -0.02 1.00 16 13 C -0.12 -1.66 6.14 -26.86 -0.16 -1.82 16 14 C -0.11 -1.31 5.16 -27.60 -0.14 -1.46 16 15 C -0.11 -1.39 3.25 -90.86 -0.30 -1.69 16 16 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 17 C 0.05 0.56 6.86 -2.32 -0.02 0.54 16 18 N -0.68 -8.82 7.44 -111.37 -0.83 -9.65 16 19 C 0.01 0.16 6.48 -3.35 -0.02 0.14 16 20 C 0.08 1.21 2.58 -70.04 -0.18 1.03 16 21 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.02 0.53 6.23 -51.93 -0.32 0.21 16 24 H 0.02 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.03 0.58 5.69 -51.92 -0.30 0.28 16 27 H 0.09 1.88 5.93 -51.93 -0.31 1.57 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.62 7.74 -51.93 -0.40 0.22 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.67 7.74 -51.93 -0.40 0.27 16 35 H 0.33 4.06 8.91 -39.29 -0.35 3.71 16 36 H 0.07 1.19 5.90 -51.93 -0.31 0.89 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -29.24 280.60 -9.47 -38.72 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.15 Total: 0.89 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.39 Total: -13.95 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -1.14 Total: -46.52 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.24 -9.47 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299892531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.377 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds