Wall clock time and date at job start Mon Mar 30 2020 03:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00404 * 2 1 4 4 H 1.48498 * 109.47590 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47253 * 300.00282 * 3 2 1 6 6 H 1.48502 * 109.46752 * 59.99870 * 3 2 1 7 7 C 1.37883 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47374 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47354 * 180.02562 * 10 9 7 12 12 C 1.48870 * 110.99951 * 172.45097 * 11 10 9 13 13 C 1.54271 * 102.31938 * 159.22529 * 12 11 10 14 14 H 1.09006 * 107.36803 * 74.07050 * 13 12 11 15 15 C 1.49420 * 113.07981 * 192.26055 * 13 12 11 16 16 C 1.51676 * 115.32678 * 88.95109 * 15 13 12 17 17 C 1.52832 * 110.21157 * 43.34624 * 16 15 13 18 18 N 1.46929 * 108.79162 * 299.78083 * 17 16 15 19 19 C 1.46665 * 111.60523 * 66.61758 * 18 17 16 20 20 H 1.09002 * 110.88676 * 71.81925 * 19 18 17 21 21 C 1.47942 * 111.00181 * 290.12514 * 11 10 9 22 22 H 0.97000 * 119.99679 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47174 * 60.00466 * 9 7 2 24 24 H 1.08998 * 109.47623 * 300.00266 * 9 7 2 25 25 H 1.09001 * 109.46748 * 60.00011 * 10 9 7 26 26 H 1.08998 * 109.46805 * 300.00573 * 10 9 7 27 27 H 1.09005 * 110.83341 * 277.43129 * 12 11 10 28 28 H 1.09000 * 110.83509 * 40.81788 * 12 11 10 29 29 H 1.09003 * 108.31129 * 210.46784 * 15 13 12 30 30 H 1.09003 * 108.31080 * 327.43274 * 15 13 12 31 31 H 1.08999 * 109.34270 * 163.57591 * 16 15 13 32 32 H 1.08996 * 109.34608 * 283.11775 * 16 15 13 33 33 H 1.09000 * 109.70430 * 59.28688 * 17 16 15 34 34 H 1.08990 * 109.70473 * 179.90277 * 17 16 15 35 35 H 1.00905 * 110.60170 * 302.51594 * 18 17 16 36 36 H 1.09000 * 109.91908 * 97.19672 * 21 11 10 37 37 H 1.09000 * 109.91715 * 335.90785 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 2.4371 -6.0852 -0.1838 13 6 1.6111 -7.2639 0.3715 14 1 0.8407 -7.4964 -0.3638 15 6 2.4214 -8.5029 0.5739 16 6 3.0842 -8.6301 1.9322 17 6 2.1085 -8.2234 3.0360 18 7 1.7068 -6.8265 2.8215 19 6 0.9145 -6.6744 1.5967 20 1 -0.0805 -7.1016 1.7219 21 6 0.8335 -5.1562 1.2954 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8895 26 1 2.8719 -3.6044 -0.8905 27 1 2.6658 -6.2351 -1.2389 28 1 3.3510 -5.9425 0.3929 29 1 1.7707 -9.3652 0.4282 30 1 3.1981 -8.5328 -0.1903 31 1 3.3945 -9.6635 2.0872 32 1 3.9605 -7.9830 1.9684 33 1 1.2256 -8.8616 2.9996 34 1 2.5923 -8.3195 4.0079 35 1 2.5152 -6.2229 2.8065 36 1 -0.2092 -4.8461 1.2276 37 1 1.3404 -4.5944 2.0799 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299894665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:02 Heat of formation + Delta-G solvation = -7.165561 kcal Electronic energy + Delta-G solvation = -15856.819668 eV Core-core repulsion = 13439.969880 eV Total energy + Delta-G solvation = -2416.849788 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07358 -36.26042 -33.28342 -32.60822 -31.40083 -28.62408 -27.38238 -24.99796 -23.44988 -22.14925 -21.52262 -19.83024 -18.92767 -16.40154 -16.12591 -15.39840 -14.91415 -14.55341 -14.37616 -14.29528 -13.87104 -13.20249 -12.75444 -12.42980 -12.28462 -11.84710 -11.61178 -11.56737 -11.19089 -11.04891 -10.95309 -10.79699 -10.55589 -10.47493 -10.24066 -9.82329 -9.33477 -9.08881 -8.33880 -8.31968 -7.81621 -5.97308 -3.99831 3.32624 3.39875 3.43781 4.20389 4.43677 4.54768 4.59911 4.71768 4.91881 4.99451 5.05560 5.22942 5.38706 5.41282 5.56591 5.61874 5.77278 5.81457 5.88034 5.92097 6.01493 6.07680 6.18448 6.24664 6.26501 6.45578 6.51455 6.96222 7.07843 7.30265 7.48430 7.50923 7.78196 7.91462 8.10378 8.45599 9.07730 9.63820 11.14157 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.055400 B = 0.005411 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.292449 B = 5173.511390 C = 5225.099334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.055 3.945 11 N -0.519 5.519 12 C 0.040 3.960 13 C -0.124 4.124 14 H 0.076 0.924 15 C -0.103 4.103 16 C -0.155 4.155 17 C 0.056 3.944 18 N -0.679 5.679 19 C 0.086 3.914 20 H 0.090 0.910 21 C 0.041 3.959 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.016 0.984 25 H 0.021 0.979 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.340 0.660 36 H 0.083 0.917 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 -16.910 3.381 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.072 4.072 11 N -0.243 5.243 12 C -0.088 4.088 13 C -0.144 4.144 14 H 0.095 0.905 15 C -0.141 4.141 16 C -0.194 4.194 17 C -0.074 4.074 18 N -0.309 5.309 19 C -0.025 4.025 20 H 0.109 0.891 21 C -0.087 4.087 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.440 -16.773 3.361 17.449 hybrid contribution 1.772 0.861 -0.151 1.976 sum 5.211 -15.912 3.209 17.048 Atomic orbital electron populations 1.69987 1.06025 1.26437 1.50739 1.24994 0.94817 0.99161 0.95320 0.86549 0.80063 0.83867 0.77583 1.19809 1.20993 1.21010 1.21231 0.92966 0.91101 1.50766 0.92817 1.19053 0.93918 0.90028 0.97838 1.22507 0.96808 0.88973 0.98894 1.64932 1.26550 1.02289 1.30512 1.23203 0.94340 0.90799 1.00472 1.21384 0.98918 0.94729 0.99405 0.90540 1.20332 0.99299 0.97161 0.97301 1.21871 0.99287 1.01869 0.96389 1.21960 0.97863 0.90162 0.97371 1.60925 1.26397 1.06824 1.36719 1.22255 0.97124 0.96225 0.86906 0.89147 1.23227 1.01302 0.93188 0.91006 0.93058 0.95776 0.96523 0.96069 0.92224 0.90551 0.94654 0.92385 0.92059 0.91560 0.92237 0.91051 0.90825 0.84188 0.89913 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.77 5.03 -27.88 -0.14 0.63 16 10 C 0.06 1.20 4.69 -3.83 -0.02 1.18 16 11 N -0.52 -9.63 5.25 -229.90 -1.21 -10.84 16 12 C 0.04 0.60 5.93 -2.06 -0.01 0.59 16 13 C -0.12 -1.57 2.71 -91.84 -0.25 -1.82 16 14 H 0.08 1.01 8.13 -51.93 -0.42 0.58 16 15 C -0.10 -1.06 5.41 -29.17 -0.16 -1.22 16 16 C -0.15 -1.46 6.09 -27.49 -0.17 -1.63 16 17 C 0.06 0.57 6.56 -3.89 -0.03 0.54 16 18 N -0.68 -8.63 6.49 -105.98 -0.69 -9.31 16 19 C 0.09 1.17 3.65 -66.91 -0.24 0.92 16 20 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 21 C 0.04 0.71 5.46 -2.20 -0.01 0.69 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.46 7.52 -51.93 -0.39 0.07 16 25 H 0.02 0.45 7.82 -51.93 -0.41 0.05 16 26 H 0.06 1.28 8.11 -51.93 -0.42 0.86 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.52 8.02 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.61 7.91 -51.93 -0.41 0.20 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.34 4.47 8.17 -39.29 -0.32 4.15 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.06 1.04 6.93 -51.93 -0.36 0.68 16 LS Contribution 287.89 15.07 4.34 4.34 Total: -1.00 -30.00 287.89 -9.77 -39.77 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.49 Total: -0.46 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.44 Total: -13.84 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -1.16 Total: -46.67 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.00 -9.77 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299894665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.604 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds