Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.49062 * 110.99767 * 290.49559 * 11 10 9 13 13 C 1.52980 * 103.44698 * 213.61905 * 12 11 10 14 14 H 1.09004 * 110.85869 * 284.39181 * 13 12 11 15 15 N 1.44680 * 118.28438 * 157.25574 * 13 12 11 16 16 C 1.47738 * 109.37085 * 181.89340 * 15 13 12 17 17 C 1.52536 * 111.93267 * 58.34965 * 16 15 13 18 18 C 1.53947 * 111.46647 * 307.08350 * 17 16 15 19 19 C 1.51673 * 106.69203 * 54.98079 * 18 17 16 20 20 H 1.09001 * 109.99821 * 57.37098 * 19 18 17 21 21 C 1.48621 * 110.99755 * 170.00133 * 11 10 9 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 27 27 H 1.08990 * 110.62903 * 332.10879 * 12 11 10 28 28 H 1.08997 * 110.62208 * 95.12898 * 12 11 10 29 29 H 1.00899 * 110.91276 * 59.13475 * 15 13 12 30 30 H 1.09005 * 108.98599 * 297.71455 * 16 15 13 31 31 H 1.08998 * 108.91945 * 178.94154 * 16 15 13 32 32 H 1.08994 * 109.08390 * 186.57218 * 17 16 15 33 33 H 1.08998 * 109.02730 * 67.55706 * 17 16 15 34 34 H 1.08996 * 110.00396 * 295.68256 * 18 17 16 35 35 H 1.08997 * 110.00352 * 174.27028 * 18 17 16 36 36 H 1.09005 * 110.16898 * 238.00221 * 21 11 10 37 37 H 1.09001 * 110.16708 * 359.71840 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.8214 -5.1536 1.3021 13 6 0.8814 -6.6711 1.4853 14 1 0.1574 -7.1689 0.8401 15 7 0.7688 -7.2049 2.8254 16 6 0.8967 -8.6760 2.7793 17 6 2.2222 -9.1136 2.1641 18 6 2.4496 -8.4573 0.7902 19 6 2.3311 -6.9595 0.9979 20 1 3.0501 -6.6291 1.7476 21 6 2.4281 -6.0786 -0.2421 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8895 27 1 1.3536 -4.6482 2.1079 28 1 -0.2129 -4.8135 1.2512 29 1 -0.1046 -6.9309 3.2499 30 1 0.0784 -9.0847 2.1864 31 1 0.8297 -9.0685 3.7939 32 1 2.2194 -10.1970 2.0453 33 1 3.0350 -8.8307 2.8330 34 1 1.6916 -8.7972 0.0846 35 1 3.4441 -8.7047 0.4189 36 1 2.1110 -6.6351 -1.1241 37 1 3.4496 -5.7208 -0.3712 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299894666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = -4.192288 kcal Electronic energy + Delta-G solvation = -15743.992748 eV Core-core repulsion = 13327.271891 eV Total energy + Delta-G solvation = -2416.720857 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93020 -36.37370 -33.28119 -32.61465 -31.22430 -28.47824 -27.61522 -25.08092 -23.17937 -21.59010 -21.14388 -19.95426 -19.62280 -16.37343 -15.99193 -15.32840 -14.85810 -14.71314 -14.37596 -14.00484 -13.76046 -13.10248 -13.01648 -12.54720 -12.25815 -11.92791 -11.86350 -11.29392 -11.06622 -10.95462 -10.85186 -10.65112 -10.56563 -10.42063 -10.05237 -9.79719 -9.29945 -9.08105 -8.48947 -8.30207 -7.69971 -5.95694 -3.98004 3.34803 3.40705 3.44090 3.98984 4.42596 4.52122 4.64896 4.75032 4.96731 5.13330 5.21070 5.25915 5.40249 5.50024 5.59357 5.62545 5.71515 5.74217 5.88363 6.02597 6.06912 6.17408 6.19269 6.25215 6.40929 6.44833 6.55973 6.97563 7.03379 7.31838 7.50479 7.55228 7.81049 7.94034 8.12830 8.47950 9.09436 9.65460 11.15803 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.059089 B = 0.005272 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.745028 B = 5310.277402 C = 5513.456199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.058 3.942 11 N -0.526 5.526 12 C 0.060 3.940 13 C 0.069 3.931 14 H 0.045 0.955 15 N -0.673 5.673 16 C 0.059 3.941 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.111 4.111 20 H 0.078 0.922 21 C 0.046 3.954 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.016 0.984 25 H 0.060 0.940 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.342 0.658 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -17.392 3.807 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.069 4.069 11 N -0.250 5.250 12 C -0.068 4.068 13 C -0.042 4.042 14 H 0.063 0.937 15 N -0.304 5.304 16 C -0.070 4.070 17 C -0.155 4.155 18 C -0.144 4.144 19 C -0.131 4.131 20 H 0.097 0.903 21 C -0.082 4.082 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.160 0.840 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.780 -17.115 3.574 17.704 hybrid contribution 0.173 0.690 0.281 0.765 sum 2.953 -16.426 3.855 17.128 Atomic orbital electron populations 1.69978 1.06024 1.26509 1.50795 1.24989 0.94818 0.99138 0.95345 0.86602 0.79817 0.83529 0.78086 1.20655 1.21239 1.19937 1.21208 0.92967 0.91122 1.50722 0.92838 1.19051 0.93960 0.90053 0.97765 1.22548 0.96689 0.88772 0.98897 1.64434 1.28047 1.02393 1.30136 1.22628 1.00425 0.92438 0.91315 1.22171 0.96602 0.96289 0.89155 0.93694 1.60311 1.41076 1.09094 1.19932 1.21913 0.96892 0.87844 1.00319 1.21598 0.97671 0.99434 0.96799 1.21387 1.01634 0.94650 0.96732 1.22125 0.97470 0.95062 0.98399 0.90336 1.22571 0.96205 0.92446 0.96999 0.93043 0.95798 0.96600 0.92145 0.96015 0.92503 0.90304 0.84045 0.95449 0.90904 0.91711 0.91495 0.91926 0.91648 0.91139 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.78 5.03 -27.88 -0.14 0.64 16 10 C 0.06 1.28 4.56 -3.82 -0.02 1.26 16 11 N -0.53 -10.04 5.22 -231.63 -1.21 -11.25 16 12 C 0.06 1.06 5.70 -2.63 -0.02 1.04 16 13 C 0.07 0.98 2.81 -67.51 -0.19 0.79 16 14 H 0.05 0.66 7.98 -51.93 -0.41 0.24 16 15 N -0.67 -8.35 6.86 -106.37 -0.73 -9.08 16 16 C 0.06 0.60 6.47 -3.60 -0.02 0.58 16 17 C -0.12 -1.14 5.98 -26.47 -0.16 -1.30 16 18 C -0.11 -1.15 5.76 -26.91 -0.16 -1.31 16 19 C -0.11 -1.52 2.45 -90.19 -0.22 -1.74 16 20 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 21 C 0.05 0.72 6.56 -3.17 -0.02 0.69 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.44 7.50 -51.93 -0.39 0.05 16 25 H 0.06 1.31 8.01 -51.93 -0.42 0.89 16 26 H 0.02 0.48 7.86 -51.93 -0.41 0.07 16 27 H 0.06 1.07 7.67 -51.93 -0.40 0.68 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.34 3.82 8.89 -39.29 -0.35 3.47 16 30 H 0.03 0.27 8.11 -51.93 -0.42 -0.15 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.06 0.85 7.56 -51.93 -0.39 0.46 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -30.54 288.90 -9.75 -40.29 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.53 Total: -1.53 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.35 Total: -13.14 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.20 Total: -46.92 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.54 -9.75 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299894666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.101 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds