Wall clock time and date at job start Mon Mar 30 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.49062 * 110.99767 * 290.49559 * 11 10 9 13 13 C 1.52980 * 103.44698 * 213.61905 * 12 11 10 14 14 H 1.09004 * 110.85869 * 284.39181 * 13 12 11 15 15 N 1.44680 * 118.28438 * 157.25574 * 13 12 11 16 16 C 1.47738 * 109.37085 * 181.89340 * 15 13 12 17 17 C 1.52536 * 111.93267 * 58.34965 * 16 15 13 18 18 C 1.53947 * 111.46647 * 307.08350 * 17 16 15 19 19 C 1.51673 * 106.69203 * 54.98079 * 18 17 16 20 20 H 1.09001 * 109.99821 * 57.37098 * 19 18 17 21 21 C 1.48621 * 110.99755 * 170.00133 * 11 10 9 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 27 27 H 1.08990 * 110.62903 * 332.10879 * 12 11 10 28 28 H 1.08997 * 110.62208 * 95.12898 * 12 11 10 29 29 H 1.00899 * 110.91276 * 59.13475 * 15 13 12 30 30 H 1.09005 * 108.98599 * 297.71455 * 16 15 13 31 31 H 1.08998 * 108.91945 * 178.94154 * 16 15 13 32 32 H 1.08994 * 109.08390 * 186.57218 * 17 16 15 33 33 H 1.08998 * 109.02730 * 67.55706 * 17 16 15 34 34 H 1.08996 * 110.00396 * 295.68256 * 18 17 16 35 35 H 1.08997 * 110.00352 * 174.27028 * 18 17 16 36 36 H 1.09005 * 110.16898 * 238.00221 * 21 11 10 37 37 H 1.09001 * 110.16708 * 359.71840 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.8214 -5.1536 1.3021 13 6 0.8814 -6.6711 1.4853 14 1 0.1574 -7.1689 0.8401 15 7 0.7688 -7.2049 2.8254 16 6 0.8967 -8.6760 2.7793 17 6 2.2222 -9.1136 2.1641 18 6 2.4496 -8.4573 0.7902 19 6 2.3311 -6.9595 0.9979 20 1 3.0501 -6.6291 1.7476 21 6 2.4281 -6.0786 -0.2421 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8895 27 1 1.3536 -4.6482 2.1079 28 1 -0.2129 -4.8135 1.2512 29 1 -0.1046 -6.9309 3.2499 30 1 0.0784 -9.0847 2.1864 31 1 0.8297 -9.0685 3.7939 32 1 2.2194 -10.1970 2.0453 33 1 3.0350 -8.8307 2.8330 34 1 1.6916 -8.7972 0.0846 35 1 3.4441 -8.7047 0.4189 36 1 2.1110 -6.6351 -1.1241 37 1 3.4496 -5.7208 -0.3712 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299894666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:04 Heat of formation + Delta-G solvation = -26.292291 kcal Electronic energy + Delta-G solvation = -15744.951076 eV Core-core repulsion = 13327.271891 eV Total energy + Delta-G solvation = -2417.679185 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.10845 -37.68293 -35.31133 -33.64835 -32.86566 -30.12602 -28.86929 -26.76466 -24.65746 -22.83912 -22.42609 -21.53025 -20.74711 -18.55128 -17.11491 -16.68041 -16.28364 -16.21844 -15.91172 -15.19049 -14.88384 -14.46329 -14.40090 -14.14306 -13.60221 -13.40148 -13.22885 -13.06971 -12.79431 -12.53426 -12.30409 -11.93560 -11.80978 -11.72476 -11.52843 -11.35272 -11.15908 -11.04608 -10.55813 -9.46271 -9.24758 -8.20394 -6.32361 1.39960 1.42029 1.52993 2.40141 2.85356 3.12863 3.26431 3.52873 3.79469 3.90493 4.15281 4.22916 4.26429 4.38932 4.42992 4.52821 4.55258 4.69263 4.80049 4.83052 4.84325 4.94403 4.97815 5.04768 5.10614 5.19951 5.26372 5.43800 5.46545 5.61438 5.77009 5.95422 6.06506 6.15795 6.29309 6.42754 6.84501 7.36932 8.92031 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.059089 B = 0.005272 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.745028 B = 5310.277402 C = 5513.456199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.038 3.962 10 C 0.076 3.924 11 N -0.542 5.542 12 C 0.059 3.941 13 C 0.081 3.919 14 H 0.046 0.954 15 N -0.683 5.683 16 C 0.056 3.944 17 C -0.116 4.116 18 C -0.102 4.102 19 C -0.102 4.102 20 H 0.065 0.935 21 C 0.045 3.955 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.010 1.010 25 H 0.065 0.935 26 H 0.019 0.981 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.347 0.653 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 -18.616 3.968 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.001 3.999 10 C -0.052 4.052 11 N -0.266 5.266 12 C -0.069 4.069 13 C -0.030 4.030 14 H 0.064 0.936 15 N -0.315 5.315 16 C -0.072 4.072 17 C -0.153 4.153 18 C -0.140 4.140 19 C -0.122 4.122 20 H 0.083 0.917 21 C -0.082 4.082 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.008 0.992 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.165 0.835 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.036 -18.369 3.739 19.175 hybrid contribution -0.271 1.042 0.239 1.103 sum 3.765 -17.328 3.978 18.173 Atomic orbital electron populations 1.70118 1.07890 1.27821 1.51402 1.25982 0.95757 1.03385 0.94505 0.85403 0.78590 0.78181 0.78593 1.19589 1.20615 1.18747 1.21626 0.93512 0.92289 1.51049 0.92194 1.18870 0.94157 0.92008 0.94873 1.22171 0.95299 0.88795 0.98889 1.64310 1.28869 1.02409 1.31037 1.22543 0.98946 0.95236 0.90145 1.21927 0.97178 0.93448 0.90497 0.93635 1.60325 1.41643 1.10918 1.18596 1.22051 0.97483 0.86018 1.01653 1.21621 0.97101 1.00862 0.95759 1.21397 1.02729 0.92068 0.97777 1.22059 0.96415 0.96945 0.96780 0.91692 1.22658 0.95598 0.91452 0.98535 0.92717 0.98989 0.99195 0.91696 0.96275 0.94354 0.91975 0.83473 0.94738 0.89222 0.89170 0.91984 0.91385 0.90215 0.89733 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.15 5.03 29.85 0.15 2.30 16 10 C 0.08 3.44 4.56 86.31 0.39 3.84 16 11 N -0.54 -21.04 5.22 -886.73 -4.63 -25.67 16 12 C 0.06 2.16 5.70 85.88 0.49 2.65 16 13 C 0.08 2.25 2.81 46.23 0.13 2.38 16 14 H 0.05 1.28 7.98 -2.38 -0.02 1.26 16 15 N -0.68 -16.12 6.86 -490.44 -3.36 -19.48 16 16 C 0.06 0.99 6.47 85.99 0.56 1.55 16 17 C -0.12 -1.89 5.98 30.76 0.18 -1.71 16 18 C -0.10 -1.92 5.76 30.48 0.18 -1.75 16 19 C -0.10 -2.65 2.45 -10.51 -0.03 -2.68 16 20 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 21 C 0.05 1.35 6.56 85.78 0.56 1.92 16 22 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H -0.01 -0.62 7.50 -2.39 -0.02 -0.64 16 25 H 0.06 2.83 8.01 -2.39 -0.02 2.81 16 26 H 0.02 0.86 7.86 -2.39 -0.02 0.84 16 27 H 0.04 1.52 7.67 -2.39 -0.02 1.50 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.35 7.48 8.89 -89.69 -0.80 6.68 16 30 H 0.03 0.58 8.11 -2.38 -0.02 0.56 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 2.32 8.07 -2.38 -0.02 2.30 16 37 H 0.06 1.74 7.56 -2.39 -0.02 1.73 16 Total: -1.00 -66.54 288.90 -2.14 -68.69 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.23 Total: 10.22 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 3.31 Total: -22.93 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -7.71 Total: -103.13 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.54 -2.14 -68.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299894666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.394 kcal (2) G-P(sol) polarization free energy of solvation -66.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds