Wall clock time and date at job start Mon Mar 30 2020 03:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 115.55222 * 2 1 4 4 C 1.53004 * 117.49671 * 214.28940 * 2 1 3 5 5 C 1.52998 * 60.00141 * 252.51315 * 4 2 1 6 6 H 1.09000 * 117.51749 * 252.52061 * 5 4 2 7 7 C 1.52997 * 117.49914 * 107.49026 * 5 4 2 8 8 C 1.53000 * 110.27641 * 355.87886 * 7 5 4 9 9 C 1.54954 * 110.30924 * 118.07464 * 7 5 4 10 10 C 1.55307 * 100.93750 * 155.35818 * 9 7 5 11 11 C 1.54379 * 102.25859 * 325.86728 * 10 9 7 12 12 C 1.53001 * 109.83030 * 140.87177 * 11 10 9 13 13 C 1.50702 * 109.82860 * 261.84739 * 11 10 9 14 14 H 1.07999 * 120.00188 * 359.58129 * 13 11 10 15 15 C 1.37872 * 119.99879 * 179.58673 * 13 11 10 16 16 N 1.31517 * 120.00275 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00089 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47181 * 60.00171 * 17 15 13 19 19 H 1.48513 * 109.47035 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47174 * 299.99682 * 17 15 13 21 21 O 1.43236 * 107.58607 * 21.35432 * 11 10 9 22 22 H 1.08999 * 109.46723 * 265.02112 * 1 2 3 23 23 H 1.09003 * 109.46618 * 25.02153 * 1 2 3 24 24 H 1.09000 * 109.46726 * 145.02027 * 1 2 3 25 25 H 1.09000 * 117.49573 * 145.02379 * 4 2 1 26 26 H 1.08998 * 117.49994 * 0.02562 * 4 2 1 27 27 H 1.09001 * 109.46711 * 291.67044 * 8 7 5 28 28 H 1.08998 * 109.46906 * 51.67026 * 8 7 5 29 29 H 1.08999 * 109.46971 * 171.66838 * 8 7 5 30 30 H 1.08997 * 111.12461 * 273.28087 * 9 7 5 31 31 H 1.08999 * 111.12060 * 37.44195 * 9 7 5 32 32 H 1.09007 * 110.84183 * 207.67344 * 10 9 7 33 33 H 1.09004 * 110.84435 * 84.06387 * 10 9 7 34 34 H 1.09001 * 109.46858 * 300.40990 * 12 11 10 35 35 H 1.08996 * 109.47110 * 60.41526 * 12 11 10 36 36 H 1.09007 * 109.46732 * 180.41480 * 12 11 10 37 37 H 0.96997 * 120.00837 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2364 -1.1208 0.7654 6 1 3.1713 -0.8747 1.2689 7 6 1.3588 -2.1557 1.4722 8 6 0.5485 -2.9522 0.4475 9 6 2.2325 -3.1076 2.3275 10 6 1.2009 -3.5820 3.3871 11 6 0.3219 -2.3267 3.5737 12 6 -1.1444 -2.7373 3.7231 13 6 0.7688 -1.5667 4.7959 14 1 1.5907 -1.9363 5.3911 15 6 0.1283 -0.3996 5.1544 16 7 -0.8723 0.0508 4.4294 17 14 0.6818 0.5421 6.6697 18 1 2.1015 0.9467 6.5099 19 1 -0.1626 1.7525 6.8361 20 1 0.5456 -0.3243 7.8681 21 8 0.4814 -1.5095 2.4082 22 1 -0.3633 -0.0892 1.0238 23 1 -0.3633 0.9313 -0.4347 24 1 -0.3633 -0.8420 -0.5892 25 1 3.1715 -0.8757 -1.2679 26 1 1.6112 -1.8587 -1.2680 27 1 -0.1921 -2.3004 -0.0159 28 1 1.2172 -3.3448 -0.3186 29 1 0.0433 -3.7788 0.9471 30 1 2.5986 -3.9449 1.7333 31 1 3.0571 -2.5698 2.7952 32 1 1.6980 -3.8496 4.3196 33 1 0.6107 -4.4161 3.0077 34 1 -1.4628 -3.2781 2.8319 35 1 -1.2546 -3.3797 4.5967 36 1 -1.7603 -1.8465 3.8470 37 1 -1.3232 0.8717 4.6817 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306175316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:26 Heat of formation + Delta-G solvation = -37.511117 kcal Electronic energy + Delta-G solvation = -16948.911162 eV Core-core repulsion = 14498.452740 eV Total energy + Delta-G solvation = -2450.458421 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88399 -38.19893 -34.78387 -32.68709 -32.05736 -29.37252 -29.12572 -27.13047 -25.57872 -22.99522 -21.41469 -21.27418 -19.64811 -18.57316 -16.93528 -16.48290 -16.12609 -15.80426 -15.20754 -14.60411 -14.14639 -13.94612 -13.78942 -13.25885 -13.20770 -13.04745 -12.83158 -12.73595 -12.60377 -12.44761 -12.20221 -12.01121 -11.94048 -11.84084 -11.24572 -11.12358 -10.97219 -10.73424 -10.50193 -10.23590 -9.57405 -7.95414 -6.16645 1.41122 1.41974 1.48693 2.46102 2.83991 3.25471 3.71104 3.82099 4.02796 4.10467 4.24808 4.26819 4.45164 4.56086 4.58822 4.71218 4.75384 4.89302 4.94209 4.98461 5.02475 5.10329 5.13221 5.16145 5.21623 5.31072 5.37787 5.40191 5.45123 5.53509 5.69416 5.73071 5.85317 6.18631 6.44455 6.77297 7.31598 7.59005 9.04176 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.011044 C = 0.009834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.097139 B = 2534.633743 C = 2846.444139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.150 4.150 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.157 4.157 6 H 0.088 0.912 7 C 0.121 3.879 8 C -0.163 4.163 9 C -0.129 4.129 10 C -0.139 4.139 11 C 0.215 3.785 12 C -0.132 4.132 13 C -0.548 4.548 14 H 0.047 0.953 15 C 0.037 3.963 16 N -0.884 5.884 17 Si 0.940 3.060 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.271 1.271 21 O -0.358 6.358 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 -4.350 -8.946 10.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.169 4.169 3 H 0.113 0.887 4 C -0.187 4.187 5 C -0.175 4.175 6 H 0.107 0.893 7 C 0.081 3.919 8 C -0.220 4.220 9 C -0.167 4.167 10 C -0.176 4.176 11 C 0.178 3.822 12 C -0.190 4.190 13 C -0.585 4.585 14 H 0.065 0.935 15 C -0.165 4.165 16 N -0.521 5.521 17 Si 0.766 3.234 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.196 1.196 21 O -0.278 6.278 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.208 -4.015 -8.985 10.703 hybrid contribution 0.248 0.621 1.325 1.485 sum 4.457 -3.394 -7.660 9.489 Atomic orbital electron populations 1.21492 0.93292 1.00855 1.02207 1.22176 0.95514 0.94167 1.05009 0.88726 1.23377 1.02763 1.00651 0.91938 1.22436 0.99920 1.00911 0.94241 0.89335 1.21685 0.89292 0.90675 0.90271 1.22515 1.00645 0.99803 0.99069 1.23100 0.97555 0.99159 0.96853 1.23118 0.97622 0.98161 0.98728 1.19620 0.91308 0.86844 0.84461 1.21890 0.99758 0.99965 0.97354 1.21557 1.17196 1.09400 1.10384 0.93489 1.25605 0.94684 0.97896 0.98321 1.70080 1.21957 1.21280 1.38808 0.85933 0.78131 0.78348 0.80986 1.20353 1.21110 1.19632 1.88732 1.65635 1.45210 1.28272 0.92874 0.92887 0.91721 0.87250 0.87212 0.91707 0.89957 0.93450 0.89197 0.92539 0.92162 0.91548 0.95457 0.94678 0.92330 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.64 71.98 0.62 -3.72 16 2 C -0.15 -5.01 6.38 -10.79 -0.07 -5.08 16 3 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 4 C -0.15 -3.97 9.23 30.59 0.28 -3.69 16 5 C -0.16 -5.47 5.51 -10.79 -0.06 -5.53 16 6 H 0.09 3.18 7.92 -2.39 -0.02 3.16 16 7 C 0.12 4.62 0.70 -10.13 -0.01 4.61 16 8 C -0.16 -5.25 7.44 71.98 0.54 -4.72 16 9 C -0.13 -4.72 6.05 32.05 0.19 -4.53 16 10 C -0.14 -5.69 5.68 31.85 0.18 -5.51 16 11 C 0.22 10.75 0.81 -11.07 -0.01 10.74 16 12 C -0.13 -6.51 8.52 71.98 0.61 -5.90 16 13 C -0.55 -30.57 8.23 25.60 0.21 -30.36 16 14 H 0.05 2.61 7.48 -2.91 -0.02 2.59 16 15 C 0.04 2.09 5.26 84.65 0.45 2.54 16 16 N -0.88 -51.74 10.93 21.45 0.23 -51.50 16 17 Si 0.94 44.58 29.54 68.60 2.03 46.60 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 O -0.36 -17.71 7.30 -148.98 -1.09 -18.79 16 22 H 0.05 2.43 6.08 -2.39 -0.01 2.41 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 2.07 5.48 -2.39 -0.01 2.05 16 25 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.11 2.62 5.75 -2.39 -0.01 2.61 16 27 H 0.06 2.13 4.75 -2.39 -0.01 2.12 16 28 H 0.08 2.11 6.67 -2.39 -0.02 2.09 16 29 H 0.05 1.55 7.30 -2.39 -0.02 1.53 16 30 H 0.09 2.66 8.04 -2.39 -0.02 2.64 16 31 H 0.06 2.18 7.90 -2.39 -0.02 2.16 16 32 H 0.06 2.48 7.60 -2.38 -0.02 2.47 16 33 H 0.07 2.46 7.38 -2.38 -0.02 2.44 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 3.25 6.06 -2.38 -0.01 3.23 16 37 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -61.74 279.00 5.15 -56.59 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 1.04 Total: 18.24 kcal Atomic # 6 Polarization: -54.08 SS G_CDS: 2.94 Total: -51.14 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.23 Total: -51.50 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.09 Total: -18.79 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.74 5.15 -56.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.079 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds