Wall clock time and date at job start Mon Mar 30 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 115.56122 * 2 1 4 4 C 1.52994 * 117.49663 * 214.30589 * 2 1 3 5 5 C 1.53001 * 117.49774 * 145.68271 * 2 1 3 6 6 H 1.08996 * 117.49850 * 215.00354 * 5 2 1 7 7 C 1.53005 * 117.49748 * 0.02562 * 5 2 1 8 8 C 1.52991 * 110.27478 * 291.86138 * 7 5 2 9 9 C 1.54947 * 110.30794 * 169.66332 * 7 5 2 10 10 C 1.55452 * 100.98826 * 204.69217 * 9 7 5 11 11 C 1.54387 * 102.18644 * 34.03784 * 10 9 7 12 12 C 1.53005 * 109.82736 * 98.30314 * 11 10 9 13 13 C 1.50700 * 109.83121 * 219.17973 * 11 10 9 14 14 H 1.08003 * 119.99980 * 359.54819 * 13 11 10 15 15 C 1.37868 * 120.00055 * 179.81382 * 13 11 10 16 16 N 1.31518 * 119.99899 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00016 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47160 * 90.00530 * 17 15 13 19 19 H 1.48504 * 109.47164 * 209.99892 * 17 15 13 20 20 H 1.48500 * 109.47113 * 330.00060 * 17 15 13 21 21 O 1.43231 * 107.66553 * 338.74585 * 11 10 9 22 22 H 1.09005 * 109.47472 * 281.96873 * 1 2 3 23 23 H 1.09000 * 109.47105 * 41.96115 * 1 2 3 24 24 H 1.09001 * 109.47561 * 161.96706 * 1 2 3 25 25 H 1.09002 * 117.49779 * 145.02706 * 4 2 1 26 26 H 1.08996 * 117.50112 * 359.97438 * 4 2 1 27 27 H 1.09007 * 109.47427 * 189.22943 * 8 7 5 28 28 H 1.09007 * 109.47293 * 309.22503 * 8 7 5 29 29 H 1.08994 * 109.47526 * 69.22615 * 8 7 5 30 30 H 1.08997 * 111.12411 * 322.55610 * 9 7 5 31 31 H 1.08999 * 111.12357 * 86.68139 * 9 7 5 32 32 H 1.08995 * 110.83552 * 275.89112 * 10 9 7 33 33 H 1.08998 * 110.92791 * 152.22942 * 10 9 7 34 34 H 1.08994 * 109.46892 * 180.18534 * 12 11 10 35 35 H 1.08997 * 109.46743 * 300.17978 * 12 11 10 36 36 H 1.09000 * 109.47279 * 60.18506 * 12 11 10 37 37 H 0.97001 * 119.99606 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1713 -0.8750 1.2687 7 6 1.3587 -2.1564 1.4712 8 6 0.6164 -1.5114 2.6431 9 6 2.2213 -3.3444 1.9665 10 6 1.1591 -4.4779 2.0244 11 6 0.2374 -4.1217 0.8382 12 6 0.6129 -4.9647 -0.3822 13 6 -1.1998 -4.3769 1.2129 14 1 -1.4423 -4.7618 2.1925 15 6 -2.2047 -4.1242 0.3034 16 7 -1.9089 -3.6609 -0.8914 17 14 -3.9862 -4.4399 0.7682 18 1 -4.5649 -3.2132 1.3729 19 1 -4.7579 -4.8038 -0.4473 20 1 -4.0522 -5.5536 1.7483 21 8 0.4238 -2.7322 0.5449 22 1 -0.3634 0.2131 1.0053 23 1 -0.3633 0.7642 -0.6871 24 1 -0.3634 -0.9772 -0.3181 25 1 3.1715 -0.8753 -1.2681 26 1 1.6111 -1.8588 -1.2677 27 1 0.1268 -2.2858 3.2337 28 1 1.3261 -0.9710 3.2697 29 1 -0.1327 -0.8177 2.2613 30 1 3.0094 -3.5823 1.2522 31 1 2.6369 -3.1433 2.9539 32 1 0.6099 -4.4469 2.9653 33 1 1.6223 -5.4535 1.8764 34 1 -0.0390 -4.7063 -1.2167 35 1 1.6491 -4.7665 -0.6557 36 1 0.4958 -6.0218 -0.1436 37 1 -2.6159 -3.4835 -1.5314 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306175318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:29 Heat of formation + Delta-G solvation = -41.362350 kcal Electronic energy + Delta-G solvation = -17080.938940 eV Core-core repulsion = 14630.313517 eV Total energy + Delta-G solvation = -2450.625423 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.81926 -37.88864 -34.78876 -32.70127 -32.25057 -29.54764 -28.72841 -27.27020 -25.19821 -22.98523 -21.67562 -21.11002 -19.76331 -18.34664 -16.75068 -16.60875 -15.96436 -15.76004 -15.29043 -14.58710 -14.21443 -13.85834 -13.61718 -13.16347 -13.02777 -12.98453 -12.86005 -12.74484 -12.71722 -12.39210 -12.23183 -12.11039 -11.93618 -11.79961 -11.31070 -11.22538 -10.82324 -10.62459 -10.46752 -10.25538 -9.54056 -7.93906 -6.14741 1.40255 1.42712 1.50277 2.46913 3.02512 3.17882 3.61047 3.87346 4.08069 4.16556 4.17913 4.37280 4.49621 4.66417 4.69465 4.76323 4.83075 4.92068 5.02049 5.03370 5.06545 5.08883 5.11245 5.15344 5.24193 5.27132 5.37148 5.46092 5.55404 5.63550 5.70586 5.78817 5.96788 6.21449 6.45546 6.79275 7.32170 7.60619 9.05202 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.011809 C = 0.010473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.291522 B = 2370.408628 C = 2672.872153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.140 4.140 3 H 0.117 0.883 4 C -0.170 4.170 5 C -0.143 4.143 6 H 0.127 0.873 7 C 0.118 3.882 8 C -0.150 4.150 9 C -0.133 4.133 10 C -0.138 4.138 11 C 0.217 3.783 12 C -0.129 4.129 13 C -0.545 4.545 14 H 0.045 0.955 15 C 0.040 3.960 16 N -0.882 5.882 17 Si 0.935 3.065 18 H -0.282 1.282 19 H -0.285 1.285 20 H -0.271 1.271 21 O -0.352 6.352 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.024 0.976 36 H 0.033 0.967 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 4.781 3.796 10.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 H 0.135 0.865 4 C -0.207 4.207 5 C -0.161 4.161 6 H 0.145 0.855 7 C 0.078 3.922 8 C -0.207 4.207 9 C -0.171 4.171 10 C -0.176 4.176 11 C 0.179 3.821 12 C -0.187 4.187 13 C -0.582 4.582 14 H 0.064 0.936 15 C -0.162 4.162 16 N -0.519 5.519 17 Si 0.762 3.238 18 H -0.208 1.208 19 H -0.211 1.211 20 H -0.196 1.196 21 O -0.272 6.272 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.123 0.877 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.009 4.927 3.454 10.017 hybrid contribution -1.276 -0.507 0.177 1.385 sum 6.733 4.420 3.631 8.834 Atomic orbital electron populations 1.21482 0.94090 1.02117 1.00535 1.22242 0.94770 0.94080 1.04738 0.86477 1.22938 1.02075 1.01519 0.94139 1.22540 1.00310 0.99218 0.94051 0.85475 1.21695 0.88623 0.92307 0.89567 1.22175 1.00459 1.00351 0.97747 1.23174 0.97392 0.94736 1.01761 1.23127 0.96691 0.98544 0.99219 1.19590 0.92228 0.80116 0.90175 1.21844 0.97808 0.97595 1.01488 1.21591 0.92829 1.44544 0.99284 0.93628 1.25545 1.01589 0.94149 0.94919 1.70083 1.32470 1.43725 1.05642 0.85939 0.81946 0.78240 0.77654 1.20799 1.21082 1.19594 1.88702 1.61801 1.23946 1.52785 0.92920 0.93213 0.92432 0.87740 0.90964 0.94193 0.90830 0.92927 0.91088 0.89383 0.92563 0.91626 0.92276 0.95702 0.94798 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 8.71 71.98 0.63 -4.11 16 2 C -0.14 -4.49 6.36 -10.80 -0.07 -4.56 16 3 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 4 C -0.17 -5.73 9.58 30.59 0.29 -5.44 16 5 C -0.14 -4.59 5.09 -10.79 -0.05 -4.64 16 6 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 7 C 0.12 4.45 0.68 -10.13 -0.01 4.44 16 8 C -0.15 -5.42 8.68 71.98 0.63 -4.79 16 9 C -0.13 -4.54 6.05 32.10 0.19 -4.35 16 10 C -0.14 -5.60 5.70 31.91 0.18 -5.42 16 11 C 0.22 10.61 0.82 -11.07 -0.01 10.60 16 12 C -0.13 -6.35 8.50 71.98 0.61 -5.74 16 13 C -0.54 -29.84 8.22 25.60 0.21 -29.63 16 14 H 0.05 2.50 7.52 -2.91 -0.02 2.48 16 15 C 0.04 2.23 5.26 84.65 0.45 2.67 16 16 N -0.88 -50.66 10.92 21.44 0.23 -50.42 16 17 Si 0.94 44.10 29.54 68.60 2.03 46.13 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 O -0.35 -16.79 5.67 -148.98 -0.84 -17.64 16 22 H 0.05 1.94 5.79 -2.38 -0.01 1.93 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 2.74 5.83 -2.39 -0.01 2.73 16 25 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.07 3.07 7.14 -2.39 -0.02 3.05 16 27 H 0.04 1.54 7.30 -2.38 -0.02 1.53 16 28 H 0.07 2.13 8.13 -2.38 -0.02 2.11 16 29 H 0.05 2.02 5.14 -2.39 -0.01 2.01 16 30 H 0.07 2.32 8.06 -2.39 -0.02 2.30 16 31 H 0.09 2.50 8.04 -2.39 -0.02 2.48 16 32 H 0.06 2.31 7.19 -2.39 -0.02 2.29 16 33 H 0.07 2.48 7.82 -2.39 -0.02 2.47 16 34 H 0.06 3.25 6.03 -2.39 -0.01 3.24 16 35 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -59.74 282.23 5.49 -54.24 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.03 Total: 18.65 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 3.05 Total: -50.96 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.23 Total: -50.42 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.84 Total: -17.64 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.74 5.49 -54.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.879 kcal (2) G-P(sol) polarization free energy of solvation -59.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds