Wall clock time and date at job start Mon Mar 30 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 115.55792 * 2 1 4 4 C 1.53002 * 117.50214 * 214.31392 * 2 1 3 5 5 C 1.52997 * 117.49934 * 145.68741 * 2 1 3 6 6 H 1.09002 * 117.49978 * 214.97657 * 5 2 1 7 7 C 1.52997 * 117.50139 * 0.02562 * 5 2 1 8 8 C 1.52998 * 110.27703 * 128.90941 * 7 5 2 9 9 C 1.54945 * 110.30851 * 251.10905 * 7 5 2 10 10 C 1.55300 * 100.94217 * 155.35784 * 9 7 5 11 11 C 1.54380 * 102.25238 * 325.86419 * 10 9 7 12 12 C 1.53002 * 109.83059 * 261.84325 * 11 10 9 13 13 C 1.50701 * 109.82845 * 140.87391 * 11 10 9 14 14 H 1.07997 * 120.00499 * 7.90389 * 13 11 10 15 15 C 1.37880 * 119.99788 * 187.91181 * 13 11 10 16 16 N 1.31509 * 120.00090 * 6.00601 * 15 13 11 17 17 Si 1.86797 * 120.00023 * 186.01182 * 15 13 11 18 18 H 1.48498 * 109.47457 * 94.99312 * 17 15 13 19 19 H 1.48498 * 109.47359 * 214.99434 * 17 15 13 20 20 H 1.48505 * 109.46815 * 334.99030 * 17 15 13 21 21 O 1.43235 * 107.58922 * 21.35657 * 11 10 9 22 22 H 1.08997 * 109.47232 * 273.19115 * 1 2 3 23 23 H 1.08998 * 109.47237 * 33.19606 * 1 2 3 24 24 H 1.09004 * 109.46923 * 153.19115 * 1 2 3 25 25 H 1.08998 * 117.50044 * 145.01960 * 4 2 1 26 26 H 1.09001 * 117.51615 * 359.97438 * 4 2 1 27 27 H 1.08998 * 109.46843 * 64.75464 * 8 7 5 28 28 H 1.09006 * 109.46964 * 184.75623 * 8 7 5 29 29 H 1.09000 * 109.47082 * 304.75474 * 8 7 5 30 30 H 1.09001 * 111.12137 * 273.27850 * 9 7 5 31 31 H 1.09005 * 111.12608 * 37.43637 * 9 7 5 32 32 H 1.09007 * 110.84862 * 207.67506 * 10 9 7 33 33 H 1.09003 * 111.02362 * 84.13487 * 10 9 7 34 34 H 1.09004 * 109.47204 * 183.24905 * 12 11 10 35 35 H 1.09001 * 109.47205 * 303.24634 * 12 11 10 36 36 H 1.08997 * 109.46930 * 63.24965 * 12 11 10 37 37 H 0.97003 * 120.00095 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2364 -1.1209 0.7650 6 1 3.1716 -0.8751 1.2683 7 6 1.3589 -2.1565 1.4710 8 6 1.7936 -3.5716 1.0847 9 6 1.4353 -1.9685 3.0071 10 6 0.0841 -2.5943 3.4482 11 6 -0.8478 -2.2220 2.2751 12 6 -1.6627 -0.9779 2.6342 13 6 -1.7738 -3.3720 1.9731 14 1 -1.8023 -4.2292 2.6295 15 6 -2.5845 -3.3299 0.8586 16 7 -2.4664 -2.3440 -0.0036 17 14 -3.8508 -4.6732 0.5736 18 1 -5.1651 -4.2364 1.1094 19 1 -3.9731 -4.9374 -0.8826 20 1 -3.4210 -5.9139 1.2674 21 8 -0.0227 -1.9504 1.1362 22 1 -0.3633 0.0572 1.0260 23 1 -0.3633 0.8599 -0.5626 24 1 -0.3633 -0.9172 -0.4635 25 1 3.1716 -0.8751 -1.2683 26 1 1.6116 -1.8588 -1.2681 27 1 2.8031 -3.7547 1.4528 28 1 1.1088 -4.2954 1.5267 29 1 1.7786 -3.6728 -0.0005 30 1 2.2782 -2.5164 3.4284 31 1 1.4841 -0.9122 3.2717 32 1 -0.2655 -2.1464 4.3786 33 1 0.1685 -3.6764 3.5484 34 1 -2.3594 -0.7541 1.8263 35 1 -2.2192 -1.1609 3.5535 36 1 -0.9903 -0.1323 2.7787 37 1 -3.0370 -2.3142 -0.7875 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306175321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:32 Heat of formation + Delta-G solvation = -17.638386 kcal Electronic energy + Delta-G solvation = -17245.386855 eV Core-core repulsion = 14795.790180 eV Total energy + Delta-G solvation = -2449.596675 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.29775 -36.18141 -32.83956 -31.15682 -30.60982 -27.45513 -26.94136 -25.26576 -23.92743 -21.33791 -20.06212 -19.30231 -18.34351 -16.39091 -15.26531 -14.70176 -14.21043 -14.01611 -13.39102 -12.77928 -12.51103 -12.26843 -11.92570 -11.59222 -11.50271 -11.20920 -11.18562 -10.94432 -10.83440 -10.66994 -10.50557 -10.35451 -10.20820 -10.00345 -9.63068 -9.35959 -9.07990 -8.95460 -8.70334 -8.37613 -7.51103 -5.85788 -3.99280 3.33642 3.41770 3.44173 4.45855 4.49435 5.01381 5.30950 5.47272 5.57341 5.59111 5.73520 5.86932 6.04344 6.17279 6.19906 6.29886 6.38861 6.41212 6.50055 6.62214 6.69364 6.76776 6.81391 6.85386 6.91927 6.97721 7.04551 7.10930 7.21647 7.39471 7.46331 7.87951 7.99112 8.12563 8.46846 8.72920 9.19230 9.69997 11.16212 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.011826 C = 0.010903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.623317 B = 2367.007745 C = 2567.428892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.134 4.134 3 H 0.081 0.919 4 C -0.178 4.178 5 C -0.148 4.148 6 H 0.094 0.906 7 C 0.126 3.874 8 C -0.147 4.147 9 C -0.143 4.143 10 C -0.140 4.140 11 C 0.223 3.777 12 C -0.132 4.132 13 C -0.535 4.535 14 H 0.055 0.945 15 C 0.084 3.916 16 N -0.850 5.850 17 Si 0.879 3.121 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.276 1.276 21 O -0.311 6.311 22 H 0.074 0.926 23 H 0.013 0.987 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.018 0.982 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 2.330 1.923 7.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 H 0.099 0.901 4 C -0.215 4.215 5 C -0.166 4.166 6 H 0.112 0.888 7 C 0.085 3.915 8 C -0.205 4.205 9 C -0.181 4.181 10 C -0.178 4.178 11 C 0.186 3.814 12 C -0.190 4.190 13 C -0.573 4.573 14 H 0.073 0.927 15 C -0.121 4.121 16 N -0.486 5.486 17 Si 0.707 3.293 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.201 1.201 21 O -0.230 6.230 22 H 0.093 0.907 23 H 0.031 0.969 24 H 0.124 0.876 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.037 0.963 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.954 2.472 1.548 7.541 hybrid contribution -0.476 -0.839 0.030 0.965 sum 6.478 1.633 1.578 6.865 Atomic orbital electron populations 1.21723 0.89754 1.01619 1.03338 1.22384 0.97684 0.92028 1.03144 0.90099 1.23021 1.01557 1.02993 0.93950 1.22454 0.99811 1.00891 0.93486 0.88829 1.21481 0.86806 0.91796 0.91392 1.22069 0.99282 0.97617 1.01515 1.23185 0.98106 1.00244 0.96546 1.23208 0.94817 1.00082 0.99709 1.19586 0.87729 0.92478 0.81645 1.21969 0.99925 0.96807 1.00264 1.21252 1.21934 1.03991 1.10114 0.92729 1.24916 0.96331 0.95206 0.95683 1.70020 1.37032 1.30757 1.10790 0.86825 0.82357 0.82864 0.77267 1.20925 1.21400 1.20144 1.89164 1.10976 1.87678 1.35212 0.90733 0.96861 0.87641 0.90493 0.88501 0.94167 0.91800 0.92853 0.92336 0.91870 0.92760 0.91900 0.90906 0.94847 0.96291 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 8.22 37.16 0.31 -1.98 16 2 C -0.13 -2.45 6.41 -90.62 -0.58 -3.03 16 3 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.18 -3.10 9.33 -26.73 -0.25 -3.35 16 5 C -0.15 -2.64 5.17 -90.62 -0.47 -3.11 16 6 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 7 C 0.13 2.50 0.99 -89.60 -0.09 2.41 16 8 C -0.15 -2.83 8.73 37.16 0.32 -2.50 16 9 C -0.14 -2.63 6.05 -24.48 -0.15 -2.78 16 10 C -0.14 -2.89 5.69 -24.79 -0.14 -3.03 16 11 C 0.22 5.31 0.82 -91.05 -0.07 5.23 16 12 C -0.13 -3.06 7.36 37.16 0.27 -2.78 16 13 C -0.54 -14.22 8.15 -34.44 -0.28 -14.50 16 14 H 0.05 1.46 7.60 -52.49 -0.40 1.06 16 15 C 0.08 2.26 5.20 -17.82 -0.09 2.16 16 16 N -0.85 -23.21 10.62 55.43 0.59 -22.62 16 17 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 O -0.31 -7.24 3.86 -35.23 -0.14 -7.38 16 22 H 0.07 1.67 4.25 -51.93 -0.22 1.45 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.11 2.57 5.63 -51.93 -0.29 2.28 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.10 1.87 7.55 -51.93 -0.39 1.48 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.33 7.63 -51.93 -0.40 0.93 16 29 H 0.05 1.04 7.23 -51.93 -0.38 0.66 16 30 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 31 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 32 H 0.05 1.04 7.81 -51.92 -0.41 0.64 16 33 H 0.06 1.31 7.45 -51.93 -0.39 0.92 16 34 H 0.07 1.85 6.85 -51.93 -0.36 1.50 16 35 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.02 0.40 7.05 -51.93 -0.37 0.03 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 279.74 15.07 4.22 4.22 Total: -1.00 -26.75 279.74 -7.67 -34.42 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.10 Total: 2.67 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -1.22 Total: -27.26 kcal Atomic # 7 Polarization: -23.21 SS G_CDS: 0.59 Total: -22.62 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.14 Total: -7.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.75 -7.67 -34.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.783 kcal (2) G-P(sol) polarization free energy of solvation -26.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds