Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 115.55792 * 2 1 4 4 C 1.53002 * 117.50214 * 214.31392 * 2 1 3 5 5 C 1.52997 * 117.49934 * 145.68741 * 2 1 3 6 6 H 1.09002 * 117.49978 * 214.97657 * 5 2 1 7 7 C 1.52997 * 117.50139 * 0.02562 * 5 2 1 8 8 C 1.52998 * 110.27703 * 128.90941 * 7 5 2 9 9 C 1.54945 * 110.30851 * 251.10905 * 7 5 2 10 10 C 1.55300 * 100.94217 * 155.35784 * 9 7 5 11 11 C 1.54380 * 102.25238 * 325.86419 * 10 9 7 12 12 C 1.53002 * 109.83059 * 261.84325 * 11 10 9 13 13 C 1.50701 * 109.82845 * 140.87391 * 11 10 9 14 14 H 1.07997 * 120.00499 * 7.90389 * 13 11 10 15 15 C 1.37880 * 119.99788 * 187.91181 * 13 11 10 16 16 N 1.31509 * 120.00090 * 6.00601 * 15 13 11 17 17 Si 1.86797 * 120.00023 * 186.01182 * 15 13 11 18 18 H 1.48498 * 109.47457 * 94.99312 * 17 15 13 19 19 H 1.48498 * 109.47359 * 214.99434 * 17 15 13 20 20 H 1.48505 * 109.46815 * 334.99030 * 17 15 13 21 21 O 1.43235 * 107.58922 * 21.35657 * 11 10 9 22 22 H 1.08997 * 109.47232 * 273.19115 * 1 2 3 23 23 H 1.08998 * 109.47237 * 33.19606 * 1 2 3 24 24 H 1.09004 * 109.46923 * 153.19115 * 1 2 3 25 25 H 1.08998 * 117.50044 * 145.01960 * 4 2 1 26 26 H 1.09001 * 117.51615 * 359.97438 * 4 2 1 27 27 H 1.08998 * 109.46843 * 64.75464 * 8 7 5 28 28 H 1.09006 * 109.46964 * 184.75623 * 8 7 5 29 29 H 1.09000 * 109.47082 * 304.75474 * 8 7 5 30 30 H 1.09001 * 111.12137 * 273.27850 * 9 7 5 31 31 H 1.09005 * 111.12608 * 37.43637 * 9 7 5 32 32 H 1.09007 * 110.84862 * 207.67506 * 10 9 7 33 33 H 1.09003 * 111.02362 * 84.13487 * 10 9 7 34 34 H 1.09004 * 109.47204 * 183.24905 * 12 11 10 35 35 H 1.09001 * 109.47205 * 303.24634 * 12 11 10 36 36 H 1.08997 * 109.46930 * 63.24965 * 12 11 10 37 37 H 0.97003 * 120.00095 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2364 -1.1209 0.7650 6 1 3.1716 -0.8751 1.2683 7 6 1.3589 -2.1565 1.4710 8 6 1.7936 -3.5716 1.0847 9 6 1.4353 -1.9685 3.0071 10 6 0.0841 -2.5943 3.4482 11 6 -0.8478 -2.2220 2.2751 12 6 -1.6627 -0.9779 2.6342 13 6 -1.7738 -3.3720 1.9731 14 1 -1.8023 -4.2292 2.6295 15 6 -2.5845 -3.3299 0.8586 16 7 -2.4664 -2.3440 -0.0036 17 14 -3.8508 -4.6732 0.5736 18 1 -5.1651 -4.2364 1.1094 19 1 -3.9731 -4.9374 -0.8826 20 1 -3.4210 -5.9139 1.2674 21 8 -0.0227 -1.9504 1.1362 22 1 -0.3633 0.0572 1.0260 23 1 -0.3633 0.8599 -0.5626 24 1 -0.3633 -0.9172 -0.4635 25 1 3.1716 -0.8751 -1.2683 26 1 1.6116 -1.8588 -1.2681 27 1 2.8031 -3.7547 1.4528 28 1 1.1088 -4.2954 1.5267 29 1 1.7786 -3.6728 -0.0005 30 1 2.2782 -2.5164 3.4284 31 1 1.4841 -0.9122 3.2717 32 1 -0.2655 -2.1464 4.3786 33 1 0.1685 -3.6764 3.5484 34 1 -2.3594 -0.7541 1.8263 35 1 -2.2192 -1.1609 3.5535 36 1 -0.9903 -0.1323 2.7787 37 1 -3.0370 -2.3142 -0.7875 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306175321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = -30.284090 kcal Electronic energy + Delta-G solvation = -17245.935214 eV Core-core repulsion = 14795.790180 eV Total energy + Delta-G solvation = -2450.145034 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88343 -37.71805 -34.72713 -32.81914 -32.39830 -29.11876 -28.55208 -27.18919 -25.58370 -22.84116 -21.57852 -21.02051 -19.88459 -18.31835 -16.76372 -16.61440 -15.81837 -15.59974 -15.12530 -14.42342 -14.19827 -13.94603 -13.60645 -13.36318 -13.09826 -12.86934 -12.83805 -12.71725 -12.64091 -12.33948 -12.20104 -12.05872 -11.92038 -11.72935 -11.21317 -11.03330 -10.69624 -10.46920 -10.42120 -10.34068 -9.25533 -7.89081 -6.07864 1.40609 1.44205 1.50930 2.49602 3.05691 3.25075 3.60770 3.89710 4.09826 4.15429 4.27895 4.38709 4.55425 4.69416 4.78263 4.79508 4.82573 4.92459 5.01416 5.04320 5.07672 5.12777 5.22253 5.23965 5.30546 5.36335 5.47741 5.52677 5.64241 5.65720 5.69739 5.87048 6.13590 6.33173 6.50818 6.79913 7.36582 7.65539 9.09842 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.011826 C = 0.010903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.623317 B = 2367.007745 C = 2567.428892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.142 4.142 3 H 0.108 0.892 4 C -0.171 4.171 5 C -0.143 4.143 6 H 0.126 0.874 7 C 0.108 3.892 8 C -0.142 4.142 9 C -0.131 4.131 10 C -0.139 4.139 11 C 0.212 3.788 12 C -0.121 4.121 13 C -0.551 4.551 14 H 0.043 0.957 15 C 0.043 3.957 16 N -0.867 5.867 17 Si 0.930 3.070 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.276 1.276 21 O -0.328 6.328 22 H 0.059 0.941 23 H 0.015 0.985 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.067 2.827 2.584 9.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.160 4.160 3 H 0.126 0.874 4 C -0.208 4.208 5 C -0.161 4.161 6 H 0.144 0.856 7 C 0.068 3.932 8 C -0.199 4.199 9 C -0.168 4.168 10 C -0.176 4.176 11 C 0.174 3.826 12 C -0.179 4.179 13 C -0.589 4.589 14 H 0.061 0.939 15 C -0.161 4.161 16 N -0.503 5.503 17 Si 0.757 3.243 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.201 1.201 21 O -0.248 6.248 22 H 0.077 0.923 23 H 0.034 0.966 24 H 0.088 0.912 25 H 0.127 0.873 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.908 2.963 2.215 9.646 hybrid contribution -1.093 -1.013 -0.185 1.501 sum 7.815 1.951 2.030 8.307 Atomic orbital electron populations 1.21485 0.92345 0.99825 1.01892 1.22366 0.95683 0.93686 1.04237 0.87370 1.22990 1.02171 1.01661 0.93982 1.22522 1.00281 0.99644 0.93618 0.85621 1.21819 0.85693 0.92728 0.92985 1.22007 1.00444 0.96867 1.00590 1.23140 0.97536 1.01009 0.95120 1.23115 0.95719 0.99825 0.98984 1.19601 0.88317 0.91552 0.83146 1.21824 0.99521 0.97376 0.99154 1.21572 1.22871 1.04610 1.09831 0.93892 1.25484 0.97865 0.96908 0.95803 1.70154 1.37442 1.31855 1.10854 0.86020 0.80598 0.80856 0.76791 1.20586 1.21592 1.20115 1.89155 1.12770 1.87646 1.35203 0.92266 0.96609 0.91204 0.87278 0.91387 0.90942 0.94341 0.94089 0.89595 0.90865 0.91584 0.92808 0.93932 0.94443 0.94819 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.17 8.22 71.98 0.59 -3.58 16 2 C -0.14 -4.83 6.41 -10.79 -0.07 -4.90 16 3 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 4 C -0.17 -5.54 9.33 30.60 0.29 -5.25 16 5 C -0.14 -4.61 5.17 -10.79 -0.06 -4.67 16 6 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 7 C 0.11 4.08 0.99 -10.13 -0.01 4.07 16 8 C -0.14 -5.24 8.73 71.98 0.63 -4.61 16 9 C -0.13 -4.39 6.05 32.05 0.19 -4.20 16 10 C -0.14 -5.52 5.69 31.85 0.18 -5.34 16 11 C 0.21 10.08 0.82 -11.07 -0.01 10.07 16 12 C -0.12 -5.62 7.36 71.98 0.53 -5.10 16 13 C -0.55 -29.78 8.15 25.60 0.21 -29.57 16 14 H 0.04 2.35 7.60 -2.91 -0.02 2.33 16 15 C 0.04 2.34 5.20 84.66 0.44 2.78 16 16 N -0.87 -48.68 10.62 21.45 0.23 -48.45 16 17 Si 0.93 43.90 29.54 68.60 2.03 45.93 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 O -0.33 -15.28 3.86 -148.98 -0.57 -15.85 16 22 H 0.06 2.64 4.25 -2.39 -0.01 2.63 16 23 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 3.48 5.63 -2.39 -0.01 3.47 16 25 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.07 2.61 7.55 -2.39 -0.02 2.59 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.04 1.58 7.63 -2.38 -0.02 1.57 16 29 H 0.04 1.57 7.23 -2.39 -0.02 1.56 16 30 H 0.09 2.43 8.04 -2.39 -0.02 2.41 16 31 H 0.07 2.33 8.06 -2.38 -0.02 2.31 16 32 H 0.07 2.42 7.81 -2.38 -0.02 2.41 16 33 H 0.05 2.20 7.45 -2.39 -0.02 2.19 16 34 H 0.04 2.20 6.85 -2.38 -0.02 2.19 16 35 H 0.04 1.63 8.12 -2.39 -0.02 1.61 16 36 H 0.03 1.41 7.05 -2.39 -0.02 1.40 16 37 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -58.10 279.74 5.62 -52.48 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.03 Total: 16.19 kcal Atomic # 6 Polarization: -53.21 SS G_CDS: 2.92 Total: -50.29 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.23 Total: -48.45 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.57 Total: -15.85 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -58.10 5.62 -52.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.197 kcal (2) G-P(sol) polarization free energy of solvation -58.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds