Wall clock time and date at job start Mon Mar 30 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00156 * 2 1 4 4 H 1.48503 * 109.47268 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.46794 * 120.00414 * 3 2 1 6 6 H 1.48498 * 109.46958 * 0.02562 * 3 2 1 7 7 C 1.37878 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99820 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46909 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47179 * 174.87863 * 10 9 7 12 12 C 1.48751 * 110.99913 * 175.64328 * 11 10 9 13 13 C 1.54461 * 104.28179 * 199.19094 * 12 11 10 14 14 H 1.09004 * 111.90116 * 262.71049 * 13 12 11 15 15 C 1.54145 * 108.79994 * 138.59252 * 13 12 11 16 16 C 1.54843 * 104.34277 * 271.41510 * 15 13 12 17 17 C 1.54836 * 102.72902 * 321.77406 * 16 15 13 18 18 H 1.09010 * 110.45982 * 279.50444 * 17 16 15 19 19 N 1.46903 * 110.45990 * 156.93686 * 17 16 15 20 20 C 1.54149 * 104.34771 * 38.21965 * 17 16 15 21 21 H 1.08999 * 111.87021 * 213.71582 * 20 17 16 22 22 C 1.48749 * 110.99939 * 61.09438 * 11 10 9 23 23 H 0.96996 * 120.00271 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47488 * 300.00194 * 9 7 2 25 25 H 1.08999 * 109.47093 * 60.00550 * 9 7 2 26 26 H 1.09009 * 109.47086 * 294.87701 * 10 9 7 27 27 H 1.08998 * 109.47534 * 54.87559 * 10 9 7 28 28 H 1.09001 * 110.46718 * 317.88757 * 12 11 10 29 29 H 1.08999 * 110.47428 * 80.48965 * 12 11 10 30 30 H 1.08996 * 110.46196 * 30.12843 * 15 13 12 31 31 H 1.09002 * 110.45985 * 152.57863 * 15 13 12 32 32 H 1.08995 * 110.75744 * 80.07684 * 16 15 13 33 33 H 1.08997 * 110.76200 * 203.46351 * 16 15 13 34 34 H 1.00903 * 111.00014 * 61.45399 * 19 17 16 35 35 H 1.00894 * 111.00265 * 185.40599 * 19 17 16 36 36 H 1.08994 * 110.47087 * 279.50391 * 22 11 10 37 37 H 1.09002 * 110.46930 * 42.10635 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 3.1030 1.6963 1.2125 6 1 1.2842 2.7465 0.0006 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5149 -4.9307 0.1231 12 6 2.4405 -6.0907 0.0217 13 6 1.5215 -7.2821 -0.3274 14 1 1.2535 -7.8614 0.5562 15 6 2.2177 -8.1506 -1.3938 16 6 1.7762 -7.5299 -2.7419 17 6 0.2988 -7.1510 -2.4756 18 1 -0.3431 -8.0264 -2.5759 19 7 -0.1325 -6.0886 -3.3939 20 6 0.2914 -6.6415 -1.0208 21 1 -0.6391 -6.8873 -0.5092 22 6 0.5868 -5.1253 -1.0229 23 1 -0.4850 -0.8400 -0.0004 24 1 0.6246 -2.5571 0.8896 25 1 0.6240 -2.5567 -0.8903 26 1 2.8099 -3.6573 -0.9329 27 1 2.9308 -3.5541 0.8400 28 1 3.1707 -5.9275 -0.7710 29 1 2.9422 -6.2625 0.9740 30 1 3.3006 -8.0932 -1.2844 31 1 1.8825 -9.1852 -1.3207 32 1 2.3672 -6.6431 -2.9708 33 1 1.8484 -8.2618 -3.5464 34 1 -0.0744 -6.3946 -4.3537 35 1 -1.0647 -5.7739 -3.1705 36 1 -0.3313 -4.5579 -0.8705 37 1 1.0670 -4.8319 -1.9564 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306402879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:27 Heat of formation + Delta-G solvation = -11.786586 kcal Electronic energy + Delta-G solvation = -15997.693131 eV Core-core repulsion = 13580.642960 eV Total energy + Delta-G solvation = -2417.050171 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.01733 -35.87484 -33.56124 -32.68110 -30.19999 -28.59791 -27.30092 -24.63355 -23.99179 -21.98640 -20.17325 -19.90969 -18.77174 -16.67143 -16.34207 -15.42648 -15.16355 -14.71279 -14.39602 -13.95064 -13.64489 -12.82374 -12.66617 -12.37817 -12.15909 -11.61928 -11.47674 -11.23695 -10.97419 -10.83779 -10.67433 -10.50337 -10.47608 -10.37224 -10.07820 -9.91639 -9.54553 -8.66270 -8.48340 -8.23753 -7.78370 -6.28053 -3.95790 3.48581 3.51255 3.69735 4.36401 4.36937 4.56848 4.61326 4.88871 5.01254 5.21225 5.32712 5.33619 5.47883 5.50153 5.60124 5.64534 5.76620 5.88956 5.97368 6.04673 6.10761 6.20862 6.24248 6.30588 6.46567 6.59747 6.64729 6.91232 7.15399 7.37228 7.41419 7.47177 7.66393 7.84537 8.33741 8.55332 8.97624 9.76352 11.13168 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043614 B = 0.006131 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.846789 B = 4565.611438 C = 4830.073965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.601 4.601 8 H 0.046 0.954 9 C 0.016 3.984 10 C 0.060 3.940 11 N -0.515 5.515 12 C 0.035 3.965 13 C -0.089 4.089 14 H 0.081 0.919 15 C -0.118 4.118 16 C -0.118 4.118 17 C 0.089 3.911 18 H 0.037 0.963 19 N -0.839 5.839 20 C -0.090 4.090 21 H 0.077 0.923 22 C 0.051 3.949 23 H 0.269 0.731 24 H 0.014 0.986 25 H 0.008 0.992 26 H 0.021 0.979 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.337 0.663 35 H 0.344 0.656 36 H 0.071 0.929 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -16.787 -4.967 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.640 4.640 8 H 0.065 0.935 9 C -0.022 4.022 10 C -0.067 4.067 11 N -0.239 5.239 12 C -0.093 4.093 13 C -0.109 4.109 14 H 0.100 0.900 15 C -0.157 4.157 16 C -0.156 4.156 17 C -0.023 4.023 18 H 0.054 0.946 19 N -0.369 5.369 20 C -0.110 4.110 21 H 0.095 0.905 22 C -0.076 4.076 23 H 0.079 0.921 24 H 0.032 0.968 25 H 0.026 0.974 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.089 0.911 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.838 -14.674 -4.146 15.359 hybrid contribution -0.074 -2.357 -1.032 2.574 sum 1.763 -17.031 -5.178 17.887 Atomic orbital electron populations 1.70759 1.06857 1.30641 1.46763 1.25818 0.96572 1.02597 0.93881 0.83551 0.74871 0.75401 0.76434 1.21536 1.21489 1.20786 1.22024 0.94186 0.92142 1.55671 0.93536 1.19193 0.94614 0.92003 0.96368 1.22294 0.96939 0.88860 0.98625 1.65809 1.15136 1.02065 1.40889 1.23240 0.94815 0.91229 1.00066 1.22478 0.94965 0.95817 0.97615 0.90023 1.22367 1.00222 0.98564 0.94514 1.22519 0.95650 1.00503 0.96894 1.22172 0.95658 0.91645 0.92821 0.94553 1.58739 1.32284 1.39694 1.06151 1.22580 0.98105 0.96741 0.93573 0.90501 1.23027 0.97839 0.93198 0.93582 0.92053 0.96774 0.97382 0.96109 0.92067 0.94203 0.91081 0.91409 0.91843 0.90520 0.92123 0.85048 0.84344 0.91073 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.97 13.65 55.43 0.76 -28.21 16 2 C 0.01 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 26.11 29.90 -169.99 -5.08 21.03 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.60 -17.95 9.11 -34.44 -0.31 -18.27 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 9 C 0.02 0.42 4.03 -27.88 -0.11 0.31 16 10 C 0.06 1.38 4.87 -3.82 -0.02 1.36 16 11 N -0.52 -10.10 5.47 -229.52 -1.25 -11.35 16 12 C 0.03 0.55 5.82 -2.03 -0.01 0.54 16 13 C -0.09 -1.17 3.96 -88.17 -0.35 -1.52 16 14 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 15 C -0.12 -1.28 6.09 -25.16 -0.15 -1.43 16 16 C -0.12 -1.33 6.48 -24.79 -0.16 -1.49 16 17 C 0.09 1.04 3.69 -66.14 -0.24 0.80 16 18 H 0.04 0.39 8.14 -51.92 -0.42 -0.04 16 19 N -0.84 -9.86 7.46 -3.33 -0.02 -9.88 16 20 C -0.09 -1.26 3.89 -88.16 -0.34 -1.61 16 21 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 22 C 0.05 0.93 4.22 -2.03 -0.01 0.92 16 23 H 0.27 8.54 7.22 -40.82 -0.29 8.25 16 24 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 25 H 0.01 0.23 7.07 -51.93 -0.37 -0.14 16 26 H 0.02 0.48 7.98 -51.92 -0.41 0.06 16 27 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.04 0.64 7.45 -51.93 -0.39 0.25 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.71 7.76 -51.93 -0.40 0.30 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.34 3.26 9.07 -39.29 -0.36 2.90 16 35 H 0.34 3.84 9.03 -39.30 -0.36 3.48 16 36 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 37 H 0.07 1.33 6.72 -51.93 -0.35 0.98 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -32.04 286.32 -9.43 -41.47 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.33 Total: 2.67 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -1.81 Total: -20.03 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.52 Total: -49.45 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.04 -9.43 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306402879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.681 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds