Wall clock time and date at job start Mon Mar 30 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00156 * 2 1 4 4 H 1.48503 * 109.47268 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.46794 * 120.00414 * 3 2 1 6 6 H 1.48498 * 109.46958 * 0.02562 * 3 2 1 7 7 C 1.37878 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99820 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46909 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47179 * 174.87863 * 10 9 7 12 12 C 1.48751 * 110.99913 * 175.64328 * 11 10 9 13 13 C 1.54461 * 104.28179 * 199.19094 * 12 11 10 14 14 H 1.09004 * 111.90116 * 262.71049 * 13 12 11 15 15 C 1.54145 * 108.79994 * 138.59252 * 13 12 11 16 16 C 1.54843 * 104.34277 * 271.41510 * 15 13 12 17 17 C 1.54836 * 102.72902 * 321.77406 * 16 15 13 18 18 H 1.09010 * 110.45982 * 279.50444 * 17 16 15 19 19 N 1.46903 * 110.45990 * 156.93686 * 17 16 15 20 20 C 1.54149 * 104.34771 * 38.21965 * 17 16 15 21 21 H 1.08999 * 111.87021 * 213.71582 * 20 17 16 22 22 C 1.48749 * 110.99939 * 61.09438 * 11 10 9 23 23 H 0.96996 * 120.00271 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47488 * 300.00194 * 9 7 2 25 25 H 1.08999 * 109.47093 * 60.00550 * 9 7 2 26 26 H 1.09009 * 109.47086 * 294.87701 * 10 9 7 27 27 H 1.08998 * 109.47534 * 54.87559 * 10 9 7 28 28 H 1.09001 * 110.46718 * 317.88757 * 12 11 10 29 29 H 1.08999 * 110.47428 * 80.48965 * 12 11 10 30 30 H 1.08996 * 110.46196 * 30.12843 * 15 13 12 31 31 H 1.09002 * 110.45985 * 152.57863 * 15 13 12 32 32 H 1.08995 * 110.75744 * 80.07684 * 16 15 13 33 33 H 1.08997 * 110.76200 * 203.46351 * 16 15 13 34 34 H 1.00903 * 111.00014 * 61.45399 * 19 17 16 35 35 H 1.00894 * 111.00265 * 185.40599 * 19 17 16 36 36 H 1.08994 * 110.47087 * 279.50391 * 22 11 10 37 37 H 1.09002 * 110.46930 * 42.10635 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 3.1030 1.6963 1.2125 6 1 1.2842 2.7465 0.0006 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5149 -4.9307 0.1231 12 6 2.4405 -6.0907 0.0217 13 6 1.5215 -7.2821 -0.3274 14 1 1.2535 -7.8614 0.5562 15 6 2.2177 -8.1506 -1.3938 16 6 1.7762 -7.5299 -2.7419 17 6 0.2988 -7.1510 -2.4756 18 1 -0.3431 -8.0264 -2.5759 19 7 -0.1325 -6.0886 -3.3939 20 6 0.2914 -6.6415 -1.0208 21 1 -0.6391 -6.8873 -0.5092 22 6 0.5868 -5.1253 -1.0229 23 1 -0.4850 -0.8400 -0.0004 24 1 0.6246 -2.5571 0.8896 25 1 0.6240 -2.5567 -0.8903 26 1 2.8099 -3.6573 -0.9329 27 1 2.9308 -3.5541 0.8400 28 1 3.1707 -5.9275 -0.7710 29 1 2.9422 -6.2625 0.9740 30 1 3.3006 -8.0932 -1.2844 31 1 1.8825 -9.1852 -1.3207 32 1 2.3672 -6.6431 -2.9708 33 1 1.8484 -8.2618 -3.5464 34 1 -0.0744 -6.3946 -4.3537 35 1 -1.0647 -5.7739 -3.1705 36 1 -0.3313 -4.5579 -0.8705 37 1 1.0670 -4.8319 -1.9564 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306402879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:27 Heat of formation + Delta-G solvation = -35.269290 kcal Electronic energy + Delta-G solvation = -15998.711418 eV Core-core repulsion = 13580.642960 eV Total energy + Delta-G solvation = -2418.068457 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20827 -37.37613 -35.48194 -33.95865 -31.86514 -29.93095 -28.75897 -25.98080 -25.74298 -23.75285 -21.82873 -20.94751 -19.96313 -18.86578 -17.49584 -16.65106 -16.34387 -16.00934 -15.69213 -15.60942 -15.41036 -14.65455 -14.16702 -13.95979 -13.59441 -13.17807 -13.02823 -12.65531 -12.48600 -12.09559 -11.97584 -11.91933 -11.86549 -11.69908 -11.58620 -11.49110 -11.37853 -10.72112 -10.55692 -9.64278 -9.31521 -8.72096 -6.42021 1.51303 1.60958 1.80506 2.55776 3.10868 3.14368 3.37832 3.52809 3.69422 3.95042 4.15532 4.28321 4.32055 4.32806 4.42972 4.46878 4.52297 4.57630 4.74546 4.76780 4.86052 4.96269 5.04446 5.09308 5.14376 5.21402 5.23553 5.30913 5.39139 5.43414 5.86330 5.98484 6.13426 6.18536 6.29570 6.54318 6.60410 7.41092 8.68847 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.043614 B = 0.006131 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.846789 B = 4565.611438 C = 4830.073965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.121 2.879 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.281 1.281 7 C -0.623 4.623 8 H 0.050 0.950 9 C 0.025 3.975 10 C 0.077 3.923 11 N -0.531 5.531 12 C 0.033 3.967 13 C -0.084 4.084 14 H 0.097 0.903 15 C -0.110 4.110 16 C -0.116 4.116 17 C 0.093 3.907 18 H 0.060 0.940 19 N -0.856 5.856 20 C -0.088 4.088 21 H 0.082 0.918 22 C 0.057 3.943 23 H 0.253 0.747 24 H -0.014 1.014 25 H -0.013 1.013 26 H 0.016 0.984 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.349 0.651 35 H 0.344 0.656 36 H 0.041 0.959 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 -18.304 -5.326 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.236 4.236 3 Si 0.941 3.059 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.206 1.206 7 C -0.661 4.661 8 H 0.069 0.931 9 C -0.013 4.013 10 C -0.051 4.051 11 N -0.255 5.255 12 C -0.095 4.095 13 C -0.103 4.103 14 H 0.115 0.885 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.018 4.018 18 H 0.078 0.922 19 N -0.387 5.387 20 C -0.108 4.108 21 H 0.100 0.900 22 C -0.071 4.071 23 H 0.063 0.937 24 H 0.005 0.995 25 H 0.005 0.995 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.059 0.941 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.975 -16.238 -4.513 17.114 hybrid contribution -0.463 -1.910 -0.914 2.167 sum 2.512 -18.148 -5.427 19.108 Atomic orbital electron populations 1.70904 1.07967 1.29742 1.48583 1.27552 0.96596 1.06955 0.92451 0.82906 0.74111 0.70742 0.78108 1.19312 1.19235 1.20597 1.22454 0.94664 0.93427 1.55575 0.93141 1.19025 0.94757 0.93549 0.93935 1.21938 0.95650 0.89321 0.98204 1.65740 1.16085 1.01834 1.41797 1.23370 0.94816 0.90679 1.00622 1.22513 0.93807 0.95033 0.98979 0.88499 1.22353 1.00370 0.99267 0.92801 1.22512 0.94680 1.00095 0.98136 1.22175 0.96569 0.92061 0.91002 0.92225 1.58711 1.32521 1.40346 1.07153 1.22592 0.98877 0.93429 0.95871 0.89980 1.22907 0.95936 0.96175 0.92115 0.93724 0.99534 0.99459 0.96592 0.92238 0.94362 0.90188 0.90841 0.89180 0.93127 0.89762 0.83660 0.84279 0.94073 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.76 13.65 21.45 0.29 -60.47 16 2 C -0.04 -2.33 5.46 84.65 0.46 -1.87 16 3 Si 1.12 52.08 29.90 68.60 2.05 54.13 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.62 -37.96 9.11 25.60 0.23 -37.72 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.02 1.41 4.03 29.85 0.12 1.53 16 10 C 0.08 3.63 4.87 86.30 0.42 4.05 16 11 N -0.53 -21.15 5.47 -880.08 -4.81 -25.96 16 12 C 0.03 1.01 5.82 86.44 0.50 1.51 16 13 C -0.08 -2.00 3.96 -9.20 -0.04 -2.03 16 14 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 15 C -0.11 -1.98 6.09 31.61 0.19 -1.79 16 16 C -0.12 -2.32 6.48 31.85 0.21 -2.12 16 17 C 0.09 2.00 3.69 45.93 0.17 2.16 16 18 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 19 N -0.86 -19.57 7.46 -164.46 -1.23 -20.80 16 20 C -0.09 -2.35 3.89 -9.20 -0.04 -2.39 16 21 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 22 C 0.06 2.10 4.22 86.44 0.36 2.46 16 23 H 0.25 16.85 7.22 -92.71 -0.67 16.18 16 24 H -0.01 -0.85 8.01 -2.39 -0.02 -0.87 16 25 H -0.01 -0.78 7.07 -2.39 -0.02 -0.80 16 26 H 0.02 0.75 7.98 -2.38 -0.02 0.73 16 27 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.04 1.19 7.45 -2.39 -0.02 1.17 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.07 1.28 7.76 -2.39 -0.02 1.26 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.35 6.35 9.07 -89.69 -0.81 5.53 16 35 H 0.34 7.69 9.03 -89.70 -0.81 6.88 16 36 H 0.04 1.72 7.70 -2.39 -0.02 1.70 16 37 H 0.05 2.11 6.72 -2.39 -0.02 2.09 16 Total: -1.00 -70.70 286.32 -1.57 -72.27 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.48 Total: 17.05 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 2.60 Total: -36.21 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -5.75 Total: -107.24 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.05 Total: 54.13 kcal Total: -70.70 -1.57 -72.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306402879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.999 kcal (2) G-P(sol) polarization free energy of solvation -70.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds