Wall clock time and date at job start Mon Mar 30 2020 03:28:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86803 * 119.99951 * 2 1
4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1
6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1
7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1
10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2
11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7
12 12 C 1.49625 * 111.00313 * 69.87158 * 11 10 9
13 13 C 1.50362 * 104.82613 * 114.66078 * 12 11 10
14 14 H 1.08999 * 110.05756 * 278.92450 * 13 12 11
15 15 C 1.51021 * 125.48571 * 144.39408 * 13 12 11
16 16 C 1.56394 * 101.60346 * 203.93483 * 15 13 12
17 17 C 1.55936 * 105.79593 * 25.00523 * 16 15 13
18 18 H 1.08998 * 110.60764 * 248.79200 * 17 16 15
19 19 N 1.46898 * 110.49003 * 126.18935 * 17 16 15
20 20 C 1.50309 * 104.16119 * 7.51854 * 17 16 15
21 21 H 1.09003 * 109.99065 * 80.52183 * 20 17 16
22 22 C 1.50107 * 110.99814 * 189.68768 * 11 10 9
23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3
24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2
25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2
26 26 H 1.09001 * 109.47194 * 299.99742 * 10 9 7
27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7
28 28 H 1.08997 * 110.36582 * 233.49966 * 12 11 10
29 29 H 1.09001 * 110.36286 * 355.71920 * 12 11 10
30 30 H 1.09006 * 110.99713 * 322.01913 * 15 13 12
31 31 H 1.08999 * 111.00026 * 85.85193 * 15 13 12
32 32 H 1.09003 * 110.18133 * 265.92179 * 16 15 13
33 33 H 1.09005 * 110.18312 * 144.08701 * 16 15 13
34 34 H 1.00894 * 111.00553 * 65.26250 * 19 17 16
35 35 H 1.00907 * 110.99727 * 189.21541 * 19 17 16
36 36 H 1.08997 * 110.85007 * 331.32836 * 22 11 10
37 37 H 1.08998 * 110.85303 * 94.96171 * 22 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8905 2.3964 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6620 -0.0005
11 7 1.5109 -4.9342 -0.0012
12 6 0.8269 -5.1579 -1.3130
13 6 1.5069 -6.3633 -1.9008
14 1 2.4443 -6.0702 -2.3736
15 6 0.8337 -7.4346 -2.7254
16 6 1.7938 -8.6496 -2.5068
17 6 2.5057 -8.3883 -1.1443
18 1 3.5628 -8.1724 -1.2990
19 7 2.3434 -9.5421 -0.2497
20 6 1.7993 -7.1852 -0.5850
21 1 0.8609 -7.4870 -0.1197
22 6 2.4382 -6.0908 0.2346
23 1 -0.4850 0.8400 0.0004
24 1 0.6241 -2.5568 -0.8903
25 1 0.6247 -2.5571 0.8897
26 1 2.8720 -3.6043 -0.8905
27 1 2.8720 -3.6043 0.8894
28 1 -0.2334 -5.3581 -1.1587
29 1 0.9584 -4.2920 -1.9618
30 1 -0.1642 -7.6515 -2.3442
31 1 0.7951 -7.1514 -3.7773
32 1 2.5275 -8.6986 -3.3114
33 1 1.2225 -9.5769 -2.4609
34 1 2.8150 -10.3544 -0.6179
35 1 2.6681 -9.3264 0.6811
36 1 3.4397 -5.8660 -0.1319
37 1 2.4616 -6.3604 1.2905
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306402880.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:30
Heat of formation + Delta-G solvation = 4.556541 kcal
Electronic energy + Delta-G solvation = -15689.661836 eV
Core-core repulsion = 13273.320357 eV
Total energy + Delta-G solvation = -2416.341480 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.26852 -36.16546 -33.36575 -32.59062 -30.63174 -28.63212 -27.47787 -24.95083
-24.18868 -21.65641 -20.61729 -19.38574 -19.25214 -16.59458 -16.16949 -15.46022
-14.94349 -14.81217 -14.47950 -14.29318 -13.39715 -13.01901 -12.84375 -12.54880
-12.06690 -11.73545 -11.55515 -11.10250 -11.07216 -10.99183 -10.77921 -10.69156
-10.48384 -10.44421 -9.95361 -9.79211 -9.33175 -9.07390 -8.85309 -8.32117
-7.71187 -5.97066 -3.99575 3.32364 3.39608 3.43569 4.11684 4.28684
4.35905 4.51002 4.80742 5.07556 5.18649 5.20061 5.29816 5.38781
5.45810 5.68071 5.70751 5.80265 5.88075 6.00322 6.07384 6.10089
6.19173 6.23124 6.27136 6.41555 6.51979 6.63267 6.99537 7.05398
7.27995 7.42326 7.52095 7.80113 7.92528 8.12231 8.46325 9.08129
9.63980 11.14356
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.060011 B = 0.005196 C = 0.005033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 466.472679 B = 5387.237835 C = 5562.037996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.058 3.942
3 Si 0.891 3.109
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.522 4.522
8 H 0.054 0.946
9 C 0.029 3.971
10 C 0.056 3.944
11 N -0.523 5.523
12 C 0.057 3.943
13 C -0.130 4.130
14 H 0.067 0.933
15 C -0.100 4.100
16 C -0.115 4.115
17 C 0.104 3.896
18 H 0.037 0.963
19 N -0.843 5.843
20 C -0.116 4.116
21 H 0.092 0.908
22 C 0.053 3.947
23 H 0.260 0.740
24 H 0.017 0.983
25 H 0.024 0.976
26 H 0.019 0.981
27 H 0.059 0.941
28 H 0.074 0.926
29 H 0.068 0.932
30 H 0.071 0.929
31 H 0.065 0.935
32 H 0.061 0.939
33 H 0.074 0.926
34 H 0.337 0.663
35 H 0.342 0.658
36 H 0.040 0.960
37 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.608 -17.051 -3.814 18.070
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.143 4.143
3 Si 0.719 3.281
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.560 4.560
8 H 0.072 0.928
9 C -0.009 4.009
10 C -0.071 4.071
11 N -0.247 5.247
12 C -0.070 4.070
13 C -0.150 4.150
14 H 0.086 0.914
15 C -0.138 4.138
16 C -0.153 4.153
17 C -0.007 4.007
18 H 0.055 0.945
19 N -0.373 5.373
20 C -0.135 4.135
21 H 0.110 0.890
22 C -0.075 4.075
23 H 0.069 0.931
24 H 0.035 0.965
25 H 0.043 0.957
26 H 0.037 0.963
27 H 0.078 0.922
28 H 0.092 0.908
29 H 0.086 0.914
30 H 0.090 0.910
31 H 0.083 0.917
32 H 0.079 0.921
33 H 0.093 0.907
34 H 0.148 0.852
35 H 0.155 0.845
36 H 0.059 0.941
37 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 3.315 -16.790 -3.537 17.476
hybrid contribution 2.187 1.031 -0.542 2.478
sum 5.502 -15.759 -4.079 17.183
Atomic orbital electron populations
1.69988 1.06014 1.26423 1.50774 1.24993 0.94815 0.99142 0.95346
0.86554 0.80069 0.83888 0.77583 1.19812 1.21042 1.20965 1.21242
0.92975 0.91115 1.50714 0.92822 1.19079 0.93928 0.90003 0.97855
1.22486 0.96810 0.89056 0.98747 1.65235 1.27560 1.02004 1.29870
1.22105 0.98879 0.95914 0.90100 1.22457 1.00579 0.95714 0.96236
0.91412 1.21721 0.98723 0.93935 0.99429 1.22997 0.98161 0.99060
0.95116 1.21278 0.96730 0.89792 0.92933 0.94543 1.58856 1.66154
1.06421 1.05876 1.22195 1.01265 0.93446 0.96609 0.89012 1.22354
0.94606 0.90929 0.99607 0.93065 0.96513 0.95742 0.96252 0.92246
0.90786 0.91391 0.90991 0.91664 0.92069 0.90747 0.85156 0.84492
0.94123 0.90712
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16
2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16
4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16
7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16
8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16
9 C 0.03 0.77 5.01 -27.88 -0.14 0.63 16
10 C 0.06 1.24 4.55 -3.82 -0.02 1.22 16
11 N -0.52 -9.96 5.28 -232.30 -1.23 -11.19 16
12 C 0.06 1.00 6.17 -3.62 -0.02 0.98 16
13 C -0.13 -1.82 2.76 -90.26 -0.25 -2.07 16
14 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
15 C -0.10 -1.15 6.72 -25.90 -0.17 -1.33 16
16 C -0.12 -1.18 6.74 -23.34 -0.16 -1.34 16
17 C 0.10 1.14 3.89 -67.49 -0.26 0.88 16
18 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
19 N -0.84 -8.01 9.21 -4.47 -0.04 -8.06 16
20 C -0.12 -1.54 2.40 -90.34 -0.22 -1.76 16
21 H 0.09 1.36 8.12 -51.93 -0.42 0.94 16
22 C 0.05 0.81 6.54 -3.07 -0.02 0.79 16
23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
24 H 0.02 0.47 6.97 -51.93 -0.36 0.11 16
25 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16
26 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16
27 H 0.06 1.29 8.09 -51.93 -0.42 0.87 16
28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
29 H 0.07 1.30 6.76 -51.93 -0.35 0.95 16
30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.07 0.74 7.98 -51.93 -0.41 0.33 16
34 H 0.34 2.54 9.08 -39.29 -0.36 2.18 16
35 H 0.34 3.01 9.01 -39.29 -0.35 2.66 16
36 H 0.04 0.62 7.88 -51.93 -0.41 0.21 16
37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
LS Contribution 291.11 15.07 4.39 4.39
Total: -1.00 -30.55 291.11 -9.27 -39.81
By element:
Atomic # 1 Polarization: 6.93 SS G_CDS: -6.43 Total: 0.50 kcal
Atomic # 6 Polarization: -14.11 SS G_CDS: -1.67 Total: -15.78 kcal
Atomic # 7 Polarization: -45.26 SS G_CDS: -0.53 Total: -45.79 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -30.55 -9.27 -39.81 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306402880.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.369 kcal
(2) G-P(sol) polarization free energy of solvation -30.546 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.557 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds