Wall clock time and date at job start Mon Mar 30 2020 03:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.49625 * 111.00313 * 69.87158 * 11 10 9 13 13 C 1.50362 * 104.82613 * 114.66078 * 12 11 10 14 14 H 1.08999 * 110.05756 * 278.92450 * 13 12 11 15 15 C 1.51021 * 125.48571 * 144.39408 * 13 12 11 16 16 C 1.56394 * 101.60346 * 203.93483 * 15 13 12 17 17 C 1.55936 * 105.79593 * 25.00523 * 16 15 13 18 18 H 1.08998 * 110.60764 * 248.79200 * 17 16 15 19 19 N 1.46898 * 110.49003 * 126.18935 * 17 16 15 20 20 C 1.50309 * 104.16119 * 7.51854 * 17 16 15 21 21 H 1.09003 * 109.99065 * 80.52183 * 20 17 16 22 22 C 1.50107 * 110.99814 * 189.68768 * 11 10 9 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 1.08997 * 110.36582 * 233.49966 * 12 11 10 29 29 H 1.09001 * 110.36286 * 355.71920 * 12 11 10 30 30 H 1.09006 * 110.99713 * 322.01913 * 15 13 12 31 31 H 1.08999 * 111.00026 * 85.85193 * 15 13 12 32 32 H 1.09003 * 110.18133 * 265.92179 * 16 15 13 33 33 H 1.09005 * 110.18312 * 144.08701 * 16 15 13 34 34 H 1.00894 * 111.00553 * 65.26250 * 19 17 16 35 35 H 1.00907 * 110.99727 * 189.21541 * 19 17 16 36 36 H 1.08997 * 110.85007 * 331.32836 * 22 11 10 37 37 H 1.08998 * 110.85303 * 94.96171 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.8269 -5.1579 -1.3130 13 6 1.5069 -6.3633 -1.9008 14 1 2.4443 -6.0702 -2.3736 15 6 0.8337 -7.4346 -2.7254 16 6 1.7938 -8.6496 -2.5068 17 6 2.5057 -8.3883 -1.1443 18 1 3.5628 -8.1724 -1.2990 19 7 2.3434 -9.5421 -0.2497 20 6 1.7993 -7.1852 -0.5850 21 1 0.8609 -7.4870 -0.1197 22 6 2.4382 -6.0908 0.2346 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6043 0.8894 28 1 -0.2334 -5.3581 -1.1587 29 1 0.9584 -4.2920 -1.9618 30 1 -0.1642 -7.6515 -2.3442 31 1 0.7951 -7.1514 -3.7773 32 1 2.5275 -8.6986 -3.3114 33 1 1.2225 -9.5769 -2.4609 34 1 2.8150 -10.3544 -0.6179 35 1 2.6681 -9.3264 0.6811 36 1 3.4397 -5.8660 -0.1319 37 1 2.4616 -6.3604 1.2905 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306402880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:30 Heat of formation + Delta-G solvation = 4.556541 kcal Electronic energy + Delta-G solvation = -15689.661836 eV Core-core repulsion = 13273.320357 eV Total energy + Delta-G solvation = -2416.341480 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26852 -36.16546 -33.36575 -32.59062 -30.63174 -28.63212 -27.47787 -24.95083 -24.18868 -21.65641 -20.61729 -19.38574 -19.25214 -16.59458 -16.16949 -15.46022 -14.94349 -14.81217 -14.47950 -14.29318 -13.39715 -13.01901 -12.84375 -12.54880 -12.06690 -11.73545 -11.55515 -11.10250 -11.07216 -10.99183 -10.77921 -10.69156 -10.48384 -10.44421 -9.95361 -9.79211 -9.33175 -9.07390 -8.85309 -8.32117 -7.71187 -5.97066 -3.99575 3.32364 3.39608 3.43569 4.11684 4.28684 4.35905 4.51002 4.80742 5.07556 5.18649 5.20061 5.29816 5.38781 5.45810 5.68071 5.70751 5.80265 5.88075 6.00322 6.07384 6.10089 6.19173 6.23124 6.27136 6.41555 6.51979 6.63267 6.99537 7.05398 7.27995 7.42326 7.52095 7.80113 7.92528 8.12231 8.46325 9.08129 9.63980 11.14356 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.060011 B = 0.005196 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.472679 B = 5387.237835 C = 5562.037996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.056 3.944 11 N -0.523 5.523 12 C 0.057 3.943 13 C -0.130 4.130 14 H 0.067 0.933 15 C -0.100 4.100 16 C -0.115 4.115 17 C 0.104 3.896 18 H 0.037 0.963 19 N -0.843 5.843 20 C -0.116 4.116 21 H 0.092 0.908 22 C 0.053 3.947 23 H 0.260 0.740 24 H 0.017 0.983 25 H 0.024 0.976 26 H 0.019 0.981 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.337 0.663 35 H 0.342 0.658 36 H 0.040 0.960 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -17.051 -3.814 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.071 4.071 11 N -0.247 5.247 12 C -0.070 4.070 13 C -0.150 4.150 14 H 0.086 0.914 15 C -0.138 4.138 16 C -0.153 4.153 17 C -0.007 4.007 18 H 0.055 0.945 19 N -0.373 5.373 20 C -0.135 4.135 21 H 0.110 0.890 22 C -0.075 4.075 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.059 0.941 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.315 -16.790 -3.537 17.476 hybrid contribution 2.187 1.031 -0.542 2.478 sum 5.502 -15.759 -4.079 17.183 Atomic orbital electron populations 1.69988 1.06014 1.26423 1.50774 1.24993 0.94815 0.99142 0.95346 0.86554 0.80069 0.83888 0.77583 1.19812 1.21042 1.20965 1.21242 0.92975 0.91115 1.50714 0.92822 1.19079 0.93928 0.90003 0.97855 1.22486 0.96810 0.89056 0.98747 1.65235 1.27560 1.02004 1.29870 1.22105 0.98879 0.95914 0.90100 1.22457 1.00579 0.95714 0.96236 0.91412 1.21721 0.98723 0.93935 0.99429 1.22997 0.98161 0.99060 0.95116 1.21278 0.96730 0.89792 0.92933 0.94543 1.58856 1.66154 1.06421 1.05876 1.22195 1.01265 0.93446 0.96609 0.89012 1.22354 0.94606 0.90929 0.99607 0.93065 0.96513 0.95742 0.96252 0.92246 0.90786 0.91391 0.90991 0.91664 0.92069 0.90747 0.85156 0.84492 0.94123 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.77 5.01 -27.88 -0.14 0.63 16 10 C 0.06 1.24 4.55 -3.82 -0.02 1.22 16 11 N -0.52 -9.96 5.28 -232.30 -1.23 -11.19 16 12 C 0.06 1.00 6.17 -3.62 -0.02 0.98 16 13 C -0.13 -1.82 2.76 -90.26 -0.25 -2.07 16 14 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.10 -1.15 6.72 -25.90 -0.17 -1.33 16 16 C -0.12 -1.18 6.74 -23.34 -0.16 -1.34 16 17 C 0.10 1.14 3.89 -67.49 -0.26 0.88 16 18 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 19 N -0.84 -8.01 9.21 -4.47 -0.04 -8.06 16 20 C -0.12 -1.54 2.40 -90.34 -0.22 -1.76 16 21 H 0.09 1.36 8.12 -51.93 -0.42 0.94 16 22 C 0.05 0.81 6.54 -3.07 -0.02 0.79 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.47 6.97 -51.93 -0.36 0.11 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 27 H 0.06 1.29 8.09 -51.93 -0.42 0.87 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.30 6.76 -51.93 -0.35 0.95 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.74 7.98 -51.93 -0.41 0.33 16 34 H 0.34 2.54 9.08 -39.29 -0.36 2.18 16 35 H 0.34 3.01 9.01 -39.29 -0.35 2.66 16 36 H 0.04 0.62 7.88 -51.93 -0.41 0.21 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 291.11 15.07 4.39 4.39 Total: -1.00 -30.55 291.11 -9.27 -39.81 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.43 Total: 0.50 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.67 Total: -15.78 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.53 Total: -45.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.55 -9.27 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306402880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.369 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds