Wall clock time and date at job start Mon Mar 30 2020 03:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.49625 * 111.00313 * 69.87158 * 11 10 9 13 13 C 1.50362 * 104.82613 * 114.66078 * 12 11 10 14 14 H 1.08999 * 110.05756 * 278.92450 * 13 12 11 15 15 C 1.51021 * 125.48571 * 144.39408 * 13 12 11 16 16 C 1.56394 * 101.60346 * 203.93483 * 15 13 12 17 17 C 1.55936 * 105.79593 * 25.00523 * 16 15 13 18 18 H 1.08998 * 110.60764 * 248.79200 * 17 16 15 19 19 N 1.46898 * 110.49003 * 126.18935 * 17 16 15 20 20 C 1.50309 * 104.16119 * 7.51854 * 17 16 15 21 21 H 1.09003 * 109.99065 * 80.52183 * 20 17 16 22 22 C 1.50107 * 110.99814 * 189.68768 * 11 10 9 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 1.08997 * 110.36582 * 233.49966 * 12 11 10 29 29 H 1.09001 * 110.36286 * 355.71920 * 12 11 10 30 30 H 1.09006 * 110.99713 * 322.01913 * 15 13 12 31 31 H 1.08999 * 111.00026 * 85.85193 * 15 13 12 32 32 H 1.09003 * 110.18133 * 265.92179 * 16 15 13 33 33 H 1.09005 * 110.18312 * 144.08701 * 16 15 13 34 34 H 1.00894 * 111.00553 * 65.26250 * 19 17 16 35 35 H 1.00907 * 110.99727 * 189.21541 * 19 17 16 36 36 H 1.08997 * 110.85007 * 331.32836 * 22 11 10 37 37 H 1.08998 * 110.85303 * 94.96171 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.8269 -5.1579 -1.3130 13 6 1.5069 -6.3633 -1.9008 14 1 2.4443 -6.0702 -2.3736 15 6 0.8337 -7.4346 -2.7254 16 6 1.7938 -8.6496 -2.5068 17 6 2.5057 -8.3883 -1.1443 18 1 3.5628 -8.1724 -1.2990 19 7 2.3434 -9.5421 -0.2497 20 6 1.7993 -7.1852 -0.5850 21 1 0.8609 -7.4870 -0.1197 22 6 2.4382 -6.0908 0.2346 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6043 0.8894 28 1 -0.2334 -5.3581 -1.1587 29 1 0.9584 -4.2920 -1.9618 30 1 -0.1642 -7.6515 -2.3442 31 1 0.7951 -7.1514 -3.7773 32 1 2.5275 -8.6986 -3.3114 33 1 1.2225 -9.5769 -2.4609 34 1 2.8150 -10.3544 -0.6179 35 1 2.6681 -9.3264 0.6811 36 1 3.4397 -5.8660 -0.1319 37 1 2.4616 -6.3604 1.2905 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306402880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:29 Heat of formation + Delta-G solvation = -17.518533 kcal Electronic energy + Delta-G solvation = -15690.619083 eV Core-core repulsion = 13273.320357 eV Total energy + Delta-G solvation = -2417.298727 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.43843 -37.49834 -35.27967 -33.76851 -32.31941 -29.87447 -29.05924 -26.12233 -25.88851 -23.29339 -21.93824 -20.78230 -20.33925 -18.58200 -17.49737 -16.56121 -16.45276 -16.09048 -15.95649 -15.42427 -14.91838 -14.50396 -14.42253 -13.85512 -13.70547 -13.17340 -13.09142 -12.78472 -12.54414 -12.44317 -12.16088 -12.06409 -11.82400 -11.63779 -11.56293 -11.37916 -11.19028 -10.99635 -10.57163 -9.59883 -9.24082 -8.21309 -6.33497 1.39196 1.40023 1.53349 2.39132 2.98549 3.03603 3.11894 3.50908 3.80067 4.00979 4.06107 4.24740 4.32330 4.36497 4.47660 4.52805 4.56861 4.61052 4.72920 4.78748 4.94977 5.00667 5.04295 5.10785 5.15541 5.23241 5.31318 5.42860 5.46523 5.61032 5.76484 5.97919 6.12304 6.29704 6.30077 6.65113 6.83656 7.35946 8.91279 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.060011 B = 0.005196 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.472679 B = 5387.237835 C = 5562.037996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.038 3.962 10 C 0.075 3.925 11 N -0.543 5.543 12 C 0.057 3.943 13 C -0.126 4.126 14 H 0.067 0.933 15 C -0.098 4.098 16 C -0.108 4.108 17 C 0.110 3.890 18 H 0.043 0.957 19 N -0.847 5.847 20 C -0.102 4.102 21 H 0.077 0.923 22 C 0.054 3.946 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.010 1.010 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.350 0.650 35 H 0.347 0.653 36 H 0.047 0.953 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 -18.064 -4.303 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.053 4.053 11 N -0.267 5.267 12 C -0.071 4.071 13 C -0.146 4.146 14 H 0.085 0.915 15 C -0.136 4.136 16 C -0.146 4.146 17 C -0.002 4.002 18 H 0.061 0.939 19 N -0.378 5.378 20 C -0.122 4.122 21 H 0.096 0.904 22 C -0.073 4.073 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.065 0.935 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.901 -17.837 -4.027 18.931 hybrid contribution 1.629 1.322 -0.362 2.129 sum 6.529 -16.515 -4.389 18.293 Atomic orbital electron populations 1.70127 1.07913 1.27780 1.51411 1.25991 0.95750 1.03415 0.94510 0.85350 0.79007 0.78491 0.77878 1.18521 1.20238 1.20229 1.21649 0.93496 0.92253 1.51002 0.92182 1.18904 0.94153 0.92037 0.94901 1.22088 0.95385 0.88993 0.98799 1.65128 1.28450 1.02087 1.31068 1.22031 0.98884 0.96736 0.89424 1.22366 1.00262 0.94762 0.97215 0.91496 1.21751 0.98777 0.93512 0.99571 1.22965 0.98119 0.98394 0.95102 1.21201 0.96736 0.89068 0.93210 0.93942 1.58807 1.66633 1.06400 1.05998 1.22080 1.00716 0.93914 0.95443 0.90442 1.22394 0.94223 0.90074 1.00602 0.92702 0.99024 0.99168 0.96159 0.91995 0.91355 0.93869 0.91308 0.90565 0.90451 0.89994 0.83594 0.84003 0.93468 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.10 5.01 29.85 0.15 2.25 16 10 C 0.08 3.38 4.55 86.30 0.39 3.77 16 11 N -0.54 -21.07 5.28 -888.86 -4.69 -25.76 16 12 C 0.06 2.03 6.17 84.92 0.52 2.55 16 13 C -0.13 -3.42 2.76 -10.56 -0.03 -3.45 16 14 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 15 C -0.10 -2.08 6.72 31.13 0.21 -1.87 16 16 C -0.11 -1.88 6.74 32.79 0.22 -1.66 16 17 C 0.11 2.10 3.89 45.06 0.18 2.28 16 18 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 19 N -0.85 -13.78 9.21 -168.07 -1.55 -15.32 16 20 C -0.10 -2.58 2.40 -10.61 -0.03 -2.60 16 21 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 22 C 0.05 1.61 6.54 85.00 0.56 2.16 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.01 -0.52 6.97 -2.39 -0.02 -0.53 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.02 0.89 8.06 -2.39 -0.02 0.87 16 27 H 0.06 2.71 8.09 -2.39 -0.02 2.69 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.04 1.73 6.76 -2.39 -0.02 1.72 16 30 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.35 7.98 -2.38 -0.02 1.33 16 34 H 0.35 4.19 9.08 -89.70 -0.81 3.38 16 35 H 0.35 5.24 9.01 -89.69 -0.81 4.43 16 36 H 0.05 1.36 7.88 -2.39 -0.02 1.34 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -66.49 291.11 -1.64 -68.13 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -0.58 Total: 11.83 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 2.87 Total: -27.91 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -5.96 Total: -99.06 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.49 -1.64 -68.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306402880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.609 kcal (2) G-P(sol) polarization free energy of solvation -66.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds