Wall clock time and date at job start Mon Mar 30 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.49700 * 110.99715 * 69.88047 * 11 10 9 13 13 C 1.49722 * 104.64674 * 115.31333 * 12 11 10 14 14 H 1.09000 * 108.53985 * 282.60251 * 13 12 11 15 15 C 1.49722 * 127.98168 * 149.17505 * 13 12 11 16 16 C 1.55999 * 103.99344 * 210.27888 * 15 13 12 17 17 C 1.56336 * 105.77603 * 6.93742 * 16 15 13 18 18 H 1.08996 * 110.96069 * 143.56145 * 17 16 15 19 19 N 1.46901 * 110.96133 * 267.26188 * 17 16 15 20 20 C 1.51575 * 101.81780 * 25.42873 * 17 16 15 21 21 H 1.09005 * 111.11464 * 71.49039 * 20 17 16 22 22 C 1.50030 * 111.00059 * 189.65642 * 11 10 9 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 27 27 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 28 28 H 1.09001 * 110.39984 * 234.10791 * 12 11 10 29 29 H 1.08997 * 110.40268 * 356.51965 * 12 11 10 30 30 H 1.09001 * 110.52689 * 328.89992 * 15 13 12 31 31 H 1.08994 * 110.52528 * 91.65038 * 15 13 12 32 32 H 1.08996 * 110.19366 * 126.01130 * 16 15 13 33 33 H 1.09000 * 110.19170 * 247.86303 * 16 15 13 34 34 H 1.00902 * 110.99683 * 298.54625 * 19 17 16 35 35 H 1.00902 * 111.00173 * 62.49251 * 19 17 16 36 36 H 1.08998 * 110.81152 * 330.90116 * 22 11 10 37 37 H 1.09002 * 110.80868 * 94.42315 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 0.8259 -5.1646 -1.2941 13 6 1.4944 -6.3776 -1.8626 14 1 2.4608 -6.0816 -2.2707 15 6 0.9012 -7.4238 -2.7544 16 6 1.6862 -8.7211 -2.3880 17 6 2.5737 -8.3474 -1.1564 18 1 2.6450 -9.1823 -0.4594 19 7 3.9085 -7.9082 -1.5845 20 6 1.7933 -7.1989 -0.5485 21 1 0.8755 -7.5529 -0.0788 22 6 2.4382 -6.0890 0.2568 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5529 0.8956 25 1 0.6244 -2.5609 -0.8844 26 1 2.8721 -3.6081 -0.8798 27 1 2.8721 -3.6002 0.9002 28 1 -0.2365 -5.3534 -1.1395 29 1 0.9685 -4.3081 -1.9531 30 1 -0.1611 -7.5478 -2.5440 31 1 1.0568 -7.1660 -3.8019 32 1 0.9922 -9.5187 -2.1232 33 1 2.3138 -9.0299 -3.2240 34 1 4.3906 -8.6447 -2.0777 35 1 3.8511 -7.0732 -2.1480 36 1 3.4372 -5.8682 -0.1191 37 1 2.4697 -6.3468 1.3154 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306402881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:32 Heat of formation + Delta-G solvation = 8.380340 kcal Electronic energy + Delta-G solvation = -15844.918504 eV Core-core repulsion = 13428.742836 eV Total energy + Delta-G solvation = -2416.175667 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.52240 -36.19003 -33.20941 -32.19208 -30.61308 -28.75752 -27.50282 -25.37025 -24.18653 -21.63616 -20.33389 -19.60726 -19.04339 -16.91285 -16.21871 -15.36617 -14.82093 -14.64166 -14.39620 -14.17011 -13.54036 -12.95536 -12.86597 -12.49768 -12.20422 -11.91014 -11.48008 -11.16841 -11.07928 -11.00380 -10.87416 -10.69494 -10.51309 -10.44696 -9.89584 -9.75776 -9.30577 -9.07080 -8.74278 -8.30225 -7.66093 -5.95484 -3.97839 3.34409 3.40557 3.44250 4.04744 4.34935 4.48008 4.53658 4.70585 4.80962 5.12832 5.23301 5.29290 5.40296 5.54692 5.58651 5.69923 5.72818 5.79207 5.90700 6.01774 6.16379 6.25970 6.27998 6.31464 6.39771 6.54733 6.61698 7.03120 7.05476 7.31238 7.46953 7.55955 7.82302 7.94833 8.14366 8.48505 9.09788 9.65618 11.15938 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.054236 B = 0.005479 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.134624 B = 5109.605013 C = 5269.177481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.057 3.943 11 N -0.525 5.525 12 C 0.061 3.939 13 C -0.136 4.136 14 H 0.061 0.939 15 C -0.101 4.101 16 C -0.157 4.157 17 C 0.101 3.899 18 H 0.085 0.915 19 N -0.838 5.838 20 C -0.109 4.109 21 H 0.089 0.911 22 C 0.057 3.943 23 H 0.260 0.740 24 H 0.024 0.976 25 H 0.015 0.985 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.338 0.662 35 H 0.341 0.659 36 H 0.055 0.945 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 -16.966 -5.031 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.070 4.070 11 N -0.250 5.250 12 C -0.066 4.066 13 C -0.156 4.156 14 H 0.079 0.921 15 C -0.140 4.140 16 C -0.197 4.197 17 C -0.011 4.011 18 H 0.103 0.897 19 N -0.368 5.368 20 C -0.128 4.128 21 H 0.107 0.893 22 C -0.070 4.070 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.073 0.927 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.271 -16.685 -3.818 17.426 hybrid contribution 0.673 0.785 -1.707 1.996 sum 3.944 -15.899 -5.525 17.288 Atomic orbital electron populations 1.69976 1.06023 1.26501 1.50796 1.24990 0.94813 0.99131 0.95367 0.86608 0.79877 0.83563 0.78023 1.20751 1.21206 1.19884 1.21215 0.92968 0.91133 1.50695 0.92843 1.19075 0.93936 0.90065 0.97755 1.22470 0.96731 0.89023 0.98801 1.65249 1.27974 1.02333 1.29401 1.21929 0.98874 0.95417 0.90417 1.22141 1.00699 0.96311 0.96442 0.92103 1.21315 1.00020 0.93881 0.98754 1.23839 0.99380 0.98001 0.98460 1.21732 0.87234 0.97034 0.95111 0.89675 1.58900 1.18206 1.09674 1.50060 1.22581 0.99445 0.94591 0.96223 0.89317 1.22369 0.95140 0.89963 0.99572 0.93044 0.95787 0.96633 0.96273 0.92191 0.90995 0.91533 0.91279 0.91968 0.91271 0.92103 0.84987 0.84351 0.92715 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.78 5.01 -27.88 -0.14 0.64 16 10 C 0.06 1.26 4.55 -3.83 -0.02 1.25 16 11 N -0.53 -10.02 5.28 -232.30 -1.23 -11.24 16 12 C 0.06 1.05 6.19 -3.88 -0.02 1.03 16 13 C -0.14 -1.83 2.60 -91.23 -0.24 -2.07 16 14 H 0.06 0.85 5.87 -51.93 -0.30 0.54 16 15 C -0.10 -1.10 6.73 -26.75 -0.18 -1.28 16 16 C -0.16 -1.45 6.68 -23.33 -0.16 -1.60 16 17 C 0.10 1.06 4.17 -66.64 -0.28 0.78 16 18 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 19 N -0.84 -8.66 8.69 -3.76 -0.03 -8.69 16 20 C -0.11 -1.42 3.00 -89.44 -0.27 -1.69 16 21 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 22 C 0.06 0.90 6.25 -2.81 -0.02 0.88 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.44 6.99 -51.93 -0.36 0.07 16 26 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 27 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.26 6.79 -51.93 -0.35 0.91 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.34 2.77 9.07 -39.29 -0.36 2.41 16 35 H 0.34 3.74 6.76 -39.29 -0.27 3.48 16 36 H 0.05 0.88 7.34 -51.93 -0.38 0.50 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -30.40 286.10 -9.17 -39.57 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.21 Total: 1.62 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.73 Total: -15.88 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.52 Total: -46.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.40 -9.17 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306402881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.949 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds