Wall clock time and date at job start Mon Mar 30 2020 03:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48505 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47163 * 299.99709 * 3 2 1 6 6 H 1.48498 * 109.47027 * 59.99780 * 3 2 1 7 7 C 1.37877 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99780 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47199 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.47394 * 180.02562 * 10 9 7 12 12 C 1.47032 * 110.99714 * 290.12686 * 11 10 9 13 13 C 1.53388 * 108.05145 * 235.64269 * 12 11 10 14 14 H 1.09003 * 112.34385 * 222.41126 * 13 12 11 15 15 C 1.56099 * 109.98748 * 95.51092 * 13 12 11 16 16 C 1.54896 * 102.83886 * 209.96168 * 15 13 12 17 17 C 1.54206 * 104.22724 * 38.25887 * 16 15 13 18 18 H 1.09000 * 109.99246 * 95.98302 * 17 16 15 19 19 N 1.46903 * 110.03151 * 217.29420 * 17 16 15 20 20 C 1.53963 * 106.78866 * 336.65074 * 17 16 15 21 21 H 1.08998 * 112.37228 * 235.42381 * 20 17 16 22 22 C 1.47076 * 110.99856 * 168.44123 * 11 10 9 23 23 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47151 * 60.00091 * 9 7 2 25 25 H 1.09004 * 109.47071 * 300.00249 * 9 7 2 26 26 H 1.08997 * 109.47361 * 60.00125 * 10 9 7 27 27 H 1.09004 * 109.47290 * 300.00088 * 10 9 7 28 28 H 1.09002 * 109.75578 * 355.29912 * 12 11 10 29 29 H 1.08994 * 109.75316 * 115.99068 * 12 11 10 30 30 H 1.08998 * 110.64174 * 91.64716 * 15 13 12 31 31 H 1.08999 * 110.78687 * 328.33613 * 15 13 12 32 32 H 1.09007 * 110.47846 * 279.57280 * 16 15 13 33 33 H 1.09002 * 110.48375 * 156.94667 * 16 15 13 34 34 H 1.00898 * 111.00085 * 297.37621 * 19 17 16 35 35 H 1.00896 * 110.99770 * 61.33286 * 19 17 16 36 36 H 1.09006 * 109.97170 * 260.06565 * 22 11 10 37 37 H 1.08996 * 109.97899 * 21.34605 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5108 -4.9343 0.0012 12 6 0.8369 -5.1542 1.2894 13 6 1.3016 -6.5066 1.8441 14 1 0.4810 -7.0836 2.2707 15 6 2.4847 -6.2966 2.8405 16 6 3.2974 -7.6066 2.6909 17 6 3.2245 -7.9280 1.1845 18 1 4.1131 -7.5496 0.6793 19 7 3.1127 -9.3790 0.9843 20 6 1.9688 -7.2230 0.6397 21 1 1.2913 -7.9128 0.1364 22 6 2.4126 -6.0633 -0.2727 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8712 -3.6039 0.8922 27 1 2.8726 -3.6047 -0.8877 28 1 1.1040 -4.3590 1.9854 29 1 -0.2430 -5.1677 1.1425 30 1 2.1138 -6.1862 3.8595 31 1 3.0854 -5.4342 2.5514 32 1 2.8417 -8.4069 3.2741 33 1 4.3317 -7.4511 2.9980 34 1 3.9289 -9.8565 1.3364 35 1 2.2716 -9.7389 1.4097 36 1 2.3307 -6.3601 -1.3184 37 1 3.4408 -5.7826 -0.0445 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306402883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:34 Heat of formation + Delta-G solvation = -13.476898 kcal Electronic energy + Delta-G solvation = -15827.878947 eV Core-core repulsion = 13410.755478 eV Total energy + Delta-G solvation = -2417.123468 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04397 -36.12901 -33.30594 -32.29615 -30.53843 -28.90990 -27.83075 -24.51877 -24.27355 -21.43699 -20.73444 -19.99286 -18.94775 -16.57237 -16.24804 -15.89183 -14.68643 -14.47960 -14.36854 -13.87086 -13.52899 -13.09078 -12.80746 -12.64002 -12.16087 -12.02003 -11.33390 -11.21208 -11.02614 -10.90306 -10.81123 -10.60085 -10.58922 -10.48086 -10.31651 -9.79702 -9.32535 -9.07415 -8.81745 -8.31563 -7.57890 -5.96725 -3.99105 3.32569 3.39881 3.43850 4.29335 4.37115 4.49287 4.52463 4.76941 4.92496 5.21098 5.26631 5.39162 5.39644 5.47427 5.53935 5.57350 5.63074 5.89396 5.92482 6.02505 6.07726 6.21723 6.31171 6.33609 6.42693 6.51227 6.57164 7.01204 7.03256 7.27585 7.58789 7.62797 7.83796 7.94609 8.13809 8.47251 9.08756 9.64462 11.14728 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.054519 B = 0.005471 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.462545 B = 5116.556394 C = 5151.043799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.061 3.939 11 N -0.531 5.531 12 C 0.055 3.945 13 C -0.111 4.111 14 H 0.084 0.916 15 C -0.117 4.117 16 C -0.158 4.158 17 C 0.092 3.908 18 H 0.084 0.916 19 N -0.843 5.843 20 C -0.092 4.092 21 H 0.091 0.909 22 C 0.054 3.946 23 H 0.259 0.741 24 H 0.024 0.976 25 H 0.016 0.984 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.337 0.663 35 H 0.339 0.661 36 H 0.072 0.928 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 -16.189 5.214 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.066 4.066 11 N -0.255 5.255 12 C -0.073 4.073 13 C -0.130 4.130 14 H 0.103 0.897 15 C -0.155 4.155 16 C -0.197 4.197 17 C -0.020 4.020 18 H 0.102 0.898 19 N -0.371 5.371 20 C -0.111 4.111 21 H 0.110 0.890 22 C -0.074 4.074 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.090 0.910 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.547 -15.856 4.016 16.977 hybrid contribution 1.119 0.928 1.732 2.261 sum 5.666 -14.929 5.748 16.971 Atomic orbital electron populations 1.69988 1.06016 1.26398 1.50830 1.24992 0.94810 0.99133 0.95363 0.86559 0.80085 0.83912 0.77572 1.19802 1.20968 1.21065 1.21244 0.92977 0.91133 1.50642 0.92823 1.19077 0.93955 0.90061 0.97807 1.22509 0.96579 0.88849 0.98696 1.63149 1.29344 1.02488 1.30485 1.22520 0.99642 0.94856 0.90308 1.23173 0.97178 0.97168 0.95497 0.89735 1.22755 0.96388 0.97220 0.99140 1.23230 1.00296 0.98468 0.97731 1.22281 0.98511 0.87776 0.93408 0.89828 1.58947 1.07506 1.03934 1.66737 1.22687 0.95829 0.96723 0.95878 0.89033 1.22800 0.95022 0.90117 0.99493 0.93087 0.95758 0.96604 0.96217 0.92350 0.92106 0.91215 0.91631 0.91119 0.91900 0.91842 0.85063 0.84867 0.90998 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.76 5.00 -27.89 -0.14 0.62 16 10 C 0.06 1.32 4.41 -3.82 -0.02 1.31 16 11 N -0.53 -10.05 5.11 -233.40 -1.19 -11.24 16 12 C 0.05 0.94 5.66 -3.55 -0.02 0.92 16 13 C -0.11 -1.46 3.88 -87.59 -0.34 -1.80 16 14 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 15 C -0.12 -1.44 6.10 -24.07 -0.15 -1.58 16 16 C -0.16 -1.60 6.51 -25.10 -0.16 -1.77 16 17 C 0.09 1.01 3.58 -66.58 -0.24 0.77 16 18 H 0.08 0.98 7.20 -51.93 -0.37 0.61 16 19 N -0.84 -7.87 9.18 -3.70 -0.03 -7.90 16 20 C -0.09 -1.18 3.64 -88.38 -0.32 -1.51 16 21 H 0.09 1.19 8.02 -51.93 -0.42 0.78 16 22 C 0.05 0.84 6.07 -3.16 -0.02 0.82 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.02 0.44 7.16 -51.93 -0.37 0.07 16 26 H 0.02 0.42 7.95 -51.93 -0.41 0.01 16 27 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 28 H 0.06 1.13 6.56 -51.93 -0.34 0.79 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 32 H 0.06 0.57 8.01 -51.93 -0.42 0.15 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.34 2.57 9.07 -39.29 -0.36 2.22 16 35 H 0.34 2.82 8.95 -39.29 -0.35 2.46 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.04 0.63 6.84 -51.93 -0.36 0.27 16 LS Contribution 288.54 15.07 4.35 4.35 Total: -1.00 -30.42 288.54 -9.28 -39.71 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.30 Total: 0.72 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.82 Total: -15.97 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.49 Total: -45.67 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.42 -9.28 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306402883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.231 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds