Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47575 * 2 1 4 4 H 1.09002 * 110.79165 * 56.82451 * 3 2 1 5 5 C 1.54958 * 110.73531 * 293.54489 * 3 2 1 6 6 C 1.54489 * 104.21231 * 204.15973 * 5 3 2 7 7 C 1.53061 * 106.27737 * 23.50950 * 6 5 3 8 8 C 1.53659 * 110.87793 * 238.70713 * 7 6 5 9 9 C 1.54680 * 103.82335 * 262.36873 * 8 7 6 10 10 C 1.54543 * 104.05631 * 0.58627 * 9 8 7 11 11 H 1.09005 * 110.33701 * 95.28621 * 10 9 8 12 12 C 1.50698 * 110.34321 * 217.43309 * 10 9 8 13 13 H 1.08005 * 119.99819 * 358.53249 * 12 10 9 14 14 C 1.37875 * 120.00046 * 178.52590 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 O 1.43557 * 111.00553 * 121.17214 * 7 6 5 21 21 C 1.53454 * 107.45102 * 359.75964 * 7 6 5 22 22 H 1.09003 * 109.47276 * 300.00515 * 1 2 3 23 23 H 1.09008 * 109.46578 * 59.99612 * 1 2 3 24 24 H 1.08994 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47276 * 239.99485 * 2 1 3 26 26 H 1.09007 * 109.47051 * 120.00155 * 2 1 3 27 27 H 1.09007 * 110.48023 * 85.48232 * 5 3 2 28 28 H 1.08992 * 110.59822 * 322.90120 * 5 3 2 29 29 H 1.09000 * 110.09279 * 264.30327 * 6 5 3 30 30 H 1.08999 * 110.09069 * 142.71210 * 6 5 3 31 31 H 1.09007 * 110.55148 * 143.78120 * 8 7 6 32 32 H 1.08990 * 110.55175 * 20.95609 * 8 7 6 33 33 H 1.09002 * 110.51158 * 241.94653 * 9 8 7 34 34 H 1.08997 * 110.51294 * 119.23405 * 9 8 7 35 35 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 36 36 H 1.08997 * 110.52985 * 95.54776 * 21 7 6 37 37 H 1.09006 * 110.52597 * 218.29853 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6434 1.9932 0.8529 5 6 1.6772 2.1527 -1.3286 6 6 2.7265 3.2796 -1.4551 7 6 3.9304 2.8407 -0.6181 8 6 4.2377 3.8698 0.4809 9 6 5.3746 4.7273 -0.1232 10 6 5.6024 4.1154 -1.5239 11 1 5.0368 4.6671 -2.2749 12 6 7.0701 4.1216 -1.8659 13 1 7.7842 4.5417 -1.1730 14 6 7.5013 3.5907 -3.0631 15 7 6.6317 3.0795 -3.9069 16 14 9.3206 3.5977 -3.4866 17 1 9.5210 2.9747 -4.8196 18 1 10.0703 2.8274 -2.4619 19 1 9.8169 4.9970 -3.5151 20 8 5.1151 2.7578 -1.4246 21 6 3.5905 1.4767 -0.0028 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.6723 2.5716 -1.2750 28 1 1.7571 1.4613 -2.1673 29 1 2.3211 4.2140 -1.0670 30 1 3.0200 3.4025 -2.4976 31 1 4.5759 3.3706 1.3889 32 1 3.3614 4.4850 0.6849 33 1 6.2778 4.6445 0.4813 34 1 5.0642 5.7687 -0.2071 35 1 5.6870 3.0755 -3.6868 36 1 3.9894 0.6699 -0.6177 37 1 3.9761 1.4095 1.0146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306455353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = -100.572206 kcal Electronic energy + Delta-G solvation = -16268.814239 eV Core-core repulsion = 13815.621284 eV Total energy + Delta-G solvation = -2453.192955 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14809 -37.99319 -34.96135 -33.37230 -32.68994 -30.16527 -29.04348 -26.70181 -24.50160 -23.70982 -22.30361 -20.71387 -20.42183 -19.08962 -17.11337 -16.65768 -16.12662 -15.66253 -15.55858 -15.28556 -14.72140 -14.45667 -14.09068 -13.77323 -13.48369 -13.23836 -12.79334 -12.66583 -12.43328 -12.31989 -12.17923 -11.94369 -11.87502 -11.76848 -11.47176 -11.37434 -11.25404 -11.19769 -10.74355 -10.66582 -10.11498 -8.67777 -6.46165 1.50515 1.60024 1.79225 2.55342 3.03250 3.40817 3.57663 3.65256 3.98725 4.07635 4.09689 4.11905 4.35599 4.36822 4.47691 4.58520 4.59562 4.67262 4.76161 4.78675 4.86257 4.89651 5.02617 5.05220 5.05808 5.11654 5.22344 5.26887 5.27135 5.35430 5.41994 5.46095 5.58311 5.93758 6.08391 6.48042 6.68361 7.46607 8.72587 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.043074 B = 0.007128 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.887477 B = 3927.187539 C = 4187.688333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.078 4.078 4 H 0.094 0.906 5 C -0.107 4.107 6 C -0.138 4.138 7 C 0.074 3.926 8 C -0.129 4.129 9 C -0.136 4.136 10 C 0.183 3.817 11 H -0.014 1.014 12 C -0.627 4.627 13 H 0.055 0.945 14 C -0.024 4.024 15 N -0.920 5.920 16 Si 1.119 2.881 17 H -0.282 1.282 18 H -0.272 1.272 19 H -0.264 1.264 20 O -0.394 6.394 21 C -0.105 4.105 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.262 0.738 36 H 0.049 0.951 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.149 -2.419 9.576 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.096 4.096 4 H 0.113 0.887 5 C -0.144 4.144 6 C -0.175 4.175 7 C 0.034 3.966 8 C -0.167 4.167 9 C -0.174 4.174 10 C 0.127 3.873 11 H 0.004 0.996 12 C -0.664 4.664 13 H 0.073 0.927 14 C -0.225 4.225 15 N -0.556 5.556 16 Si 0.939 3.061 17 H -0.208 1.208 18 H -0.197 1.197 19 H -0.189 1.189 20 O -0.314 6.314 21 C -0.142 4.142 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.994 -3.028 8.332 13.359 hybrid contribution -0.947 0.719 0.781 1.422 sum -10.941 -2.309 9.112 14.425 Atomic orbital electron populations 1.21747 0.94380 1.02072 1.02245 1.21502 0.96992 0.94909 1.01808 1.22131 0.92648 0.96925 0.97903 0.88743 1.22387 0.98239 0.96250 0.97568 1.22570 0.96119 0.99923 0.98930 1.22628 0.86909 0.96433 0.90665 1.22949 0.98561 0.97187 0.97963 1.22864 0.98519 0.99300 0.96692 1.20562 0.93631 0.80531 0.92556 0.99615 1.22398 0.92781 1.44933 1.06278 0.92667 1.27487 1.10500 0.91528 0.92937 1.70801 1.04115 1.42276 1.38409 0.82946 0.68992 0.77842 0.76271 1.20772 1.19722 1.18870 1.89288 1.40454 1.30320 1.71377 1.22361 0.97123 0.94716 1.00031 0.91785 0.92771 0.92113 0.93247 0.91249 0.89459 0.92902 0.90387 0.94816 0.90389 0.88951 0.92377 0.91258 0.92808 0.93262 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.76 71.98 0.70 -1.81 16 2 C -0.11 -2.47 5.43 30.59 0.17 -2.31 16 3 C -0.08 -1.96 2.94 -9.41 -0.03 -1.99 16 4 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 5 C -0.11 -3.00 5.48 31.77 0.17 -2.83 16 6 C -0.14 -4.94 5.86 31.12 0.18 -4.76 16 7 C 0.07 2.94 1.04 -10.40 -0.01 2.93 16 8 C -0.13 -4.55 6.18 31.39 0.19 -4.36 16 9 C -0.14 -5.87 6.63 31.69 0.21 -5.66 16 10 C 0.18 10.00 2.34 30.37 0.07 10.07 16 11 H -0.01 -0.81 7.88 -2.38 -0.02 -0.83 16 12 C -0.63 -37.66 8.78 25.60 0.22 -37.43 16 13 H 0.06 3.21 7.57 -2.91 -0.02 3.19 16 14 C -0.02 -1.43 5.42 84.65 0.46 -0.98 16 15 N -0.92 -59.88 13.57 21.45 0.29 -59.59 16 16 Si 1.12 52.12 29.90 68.60 2.05 54.17 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 O -0.39 -21.41 9.65 -148.98 -1.44 -22.85 16 21 C -0.10 -3.51 5.61 31.46 0.18 -3.33 16 22 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.05 0.94 7.42 -2.38 -0.02 0.92 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 26 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.09 1.96 8.04 -2.38 -0.02 1.94 16 28 H 0.05 1.60 8.01 -2.39 -0.02 1.58 16 29 H 0.08 2.46 7.27 -2.39 -0.02 2.44 16 30 H 0.03 1.45 7.93 -2.39 -0.02 1.43 16 31 H 0.08 2.50 7.42 -2.38 -0.02 2.48 16 32 H 0.09 2.67 7.37 -2.39 -0.02 2.65 16 33 H 0.06 2.54 7.71 -2.39 -0.02 2.52 16 34 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.26 17.54 6.61 -92.71 -0.61 16.92 16 36 H 0.05 1.88 8.00 -2.39 -0.02 1.86 16 37 H 0.08 2.33 7.39 -2.38 -0.02 2.32 16 Total: -1.00 -70.86 287.36 4.59 -66.27 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.17 Total: 14.46 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 2.52 Total: -52.46 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.29 Total: -59.59 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -1.44 Total: -22.85 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.17 kcal Total: -70.86 4.59 -66.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306455353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.307 kcal (2) G-P(sol) polarization free energy of solvation -70.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds