Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.65720 * 2 1 4 4 C 1.54959 * 110.73762 * 236.81191 * 2 1 3 5 5 C 1.54471 * 104.21553 * 203.96214 * 4 2 1 6 6 C 1.53121 * 106.29992 * 23.50841 * 5 4 2 7 7 C 1.54187 * 110.47460 * 239.48886 * 6 5 4 8 8 C 1.55441 * 100.84089 * 274.55232 * 7 6 5 9 9 C 1.54448 * 102.32574 * 326.65648 * 8 7 6 10 10 C 1.53005 * 109.83718 * 261.83949 * 9 8 7 11 11 C 1.50702 * 109.91209 * 140.89708 * 9 8 7 12 12 H 1.08002 * 120.00159 * 0.39700 * 11 9 8 13 13 C 1.37875 * 120.00199 * 180.38837 * 11 9 8 14 14 N 1.31520 * 119.99691 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00319 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47341 * 89.99939 * 15 13 11 17 17 H 1.48505 * 109.47150 * 210.00498 * 15 13 11 18 18 H 1.48498 * 109.47000 * 330.00039 * 15 13 11 19 19 O 1.42737 * 111.39669 * 121.74932 * 6 5 4 20 20 C 1.53508 * 107.39097 * 359.78396 * 6 5 4 21 21 H 1.08995 * 109.47271 * 181.73322 * 1 2 3 22 22 H 1.08999 * 109.46820 * 301.73565 * 1 2 3 23 23 H 1.08998 * 109.47015 * 61.73206 * 1 2 3 24 24 H 1.09001 * 110.48562 * 85.27424 * 4 2 1 25 25 H 1.09003 * 110.48243 * 322.63998 * 4 2 1 26 26 H 1.09005 * 110.08154 * 264.30238 * 5 4 2 27 27 H 1.08993 * 110.14037 * 142.74756 * 5 4 2 28 28 H 1.09004 * 111.14314 * 32.44608 * 7 6 5 29 29 H 1.08997 * 111.14302 * 156.65581 * 7 6 5 30 30 H 1.08993 * 110.83314 * 84.86863 * 8 7 6 31 31 H 1.09001 * 110.82844 * 208.45355 * 8 7 6 32 32 H 1.08998 * 109.47333 * 179.55885 * 10 9 8 33 33 H 1.09006 * 109.47116 * 299.56769 * 10 9 8 34 34 H 1.08997 * 109.46773 * 59.56060 * 10 9 8 35 35 H 0.96999 * 120.00205 * 179.97438 * 14 13 11 36 36 H 1.09003 * 110.52423 * 95.51555 * 20 6 5 37 37 H 1.09005 * 110.52401 * 218.25486 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0787 -0.7933 -1.2128 5 6 3.4927 -1.2312 -0.7713 6 6 3.4837 -1.2326 0.7599 7 6 4.5485 -0.2604 1.3064 8 6 5.8071 -1.1726 1.3017 9 6 5.2092 -2.5610 1.6184 10 6 5.3742 -2.8699 3.1078 11 6 5.9023 -3.6177 0.7974 12 1 6.6959 -3.3405 0.1193 13 6 5.5234 -4.9384 0.9119 14 7 4.5567 -5.2760 1.7373 15 14 6.3829 -6.2484 -0.1052 16 1 7.5481 -6.7756 0.6493 17 1 5.4350 -7.3556 -0.3895 18 1 6.8489 -5.6552 -1.3844 19 8 3.8153 -2.5192 1.2814 20 6 2.0830 -0.7954 1.2108 21 1 -0.3633 -1.0271 0.0311 22 1 -0.3633 0.5406 0.8740 23 1 -0.3633 0.4867 -0.9051 24 1 2.1351 -0.1533 -2.0933 25 1 1.4548 -1.6644 -1.4127 26 1 4.2358 -0.5244 -1.1407 27 1 3.7097 -2.2317 -1.1454 28 1 4.6793 0.5935 0.6416 29 1 4.3022 0.0646 2.3172 30 1 6.2839 -1.1702 0.3216 31 1 6.5099 -0.8673 2.0769 32 1 4.9435 -3.8471 3.3261 33 1 6.4340 -2.8747 3.3627 34 1 4.8627 -2.1079 3.6957 35 1 4.2898 -6.2051 1.8177 36 1 1.4582 -1.6651 1.4142 37 1 2.1473 -0.1556 2.0910 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306547355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = -67.204661 kcal Electronic energy + Delta-G solvation = -16679.907286 eV Core-core repulsion = 14228.161256 eV Total energy + Delta-G solvation = -2451.746030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37345 -36.25932 -32.75128 -30.99333 -30.48205 -28.89330 -26.94878 -25.17122 -23.93703 -22.19687 -19.90438 -19.21055 -18.63977 -16.38157 -15.32720 -14.84269 -14.45185 -14.27889 -13.38566 -13.17841 -12.80742 -12.31369 -12.18074 -12.07670 -11.72782 -11.44077 -11.23995 -10.97795 -10.84717 -10.50096 -10.49708 -10.38232 -10.28991 -10.24963 -10.03021 -9.89510 -9.57930 -9.26032 -8.99678 -8.41137 -7.73959 -5.88164 -4.03999 3.32921 3.40160 3.42979 4.47091 4.87630 5.02468 5.17418 5.31271 5.51406 5.65728 5.67452 5.72873 5.86144 5.96000 6.00736 6.04286 6.19101 6.27274 6.32628 6.33456 6.46557 6.53677 6.58994 6.67650 6.79914 6.81389 6.83895 6.93983 7.00014 7.12162 7.21845 7.53132 7.85710 8.17440 8.45174 8.76363 9.16926 9.66812 11.13616 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.009331 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.889212 B = 3000.048093 C = 3274.492571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.116 4.116 5 C -0.131 4.131 6 C 0.105 3.895 7 C -0.145 4.145 8 C -0.141 4.141 9 C 0.229 3.771 10 C -0.139 4.139 11 C -0.531 4.531 12 H 0.056 0.944 13 C 0.081 3.919 14 N -0.860 5.860 15 Si 0.885 3.115 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 O -0.340 6.340 20 C -0.111 4.111 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.010 0.990 35 H 0.258 0.742 36 H 0.073 0.927 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 9.270 -2.217 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.154 4.154 5 C -0.169 4.169 6 C 0.064 3.936 7 C -0.183 4.183 8 C -0.178 4.178 9 C 0.191 3.809 10 C -0.196 4.196 11 C -0.569 4.569 12 H 0.074 0.926 13 C -0.124 4.124 14 N -0.497 5.497 15 Si 0.713 3.287 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.200 1.200 19 O -0.259 6.259 20 C -0.148 4.148 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.440 8.933 -2.112 10.197 hybrid contribution 0.678 -0.561 -0.607 1.069 sum -3.762 8.372 -2.719 9.573 Atomic orbital electron populations 1.21749 0.95517 1.01741 1.00831 1.22089 0.94820 0.98755 0.95953 0.91271 1.22421 0.97163 0.99114 0.96681 1.22488 0.95510 1.02309 0.96578 1.22013 0.93024 0.86349 0.92249 1.23255 0.96991 0.97824 1.00228 1.23244 0.96604 0.97071 1.00925 1.19658 0.78746 0.90151 0.92310 1.21977 0.98521 1.02676 0.96474 1.21262 1.18808 0.91597 1.25210 0.92552 1.24984 0.94302 0.98426 0.94697 1.69963 1.27274 1.17184 1.35285 0.86736 0.79401 0.81715 0.80893 1.20698 1.21214 1.19955 1.88674 1.28036 1.27232 1.81944 1.22444 0.96512 0.99269 0.96591 0.92577 0.93081 0.93188 0.92692 0.91812 0.92596 0.90243 0.92061 0.91932 0.91925 0.92502 0.89256 0.94727 0.97060 0.93203 0.90809 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.28 37.16 0.34 -1.41 16 2 C -0.10 -1.42 3.49 -88.49 -0.31 -1.73 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.12 -1.82 6.29 -24.93 -0.16 -1.98 16 5 C -0.13 -2.49 6.14 -25.90 -0.16 -2.65 16 6 C 0.10 2.14 1.06 -89.67 -0.10 2.04 16 7 C -0.15 -2.72 5.89 -24.81 -0.15 -2.87 16 8 C -0.14 -3.00 5.95 -24.68 -0.15 -3.15 16 9 C 0.23 5.80 0.83 -91.01 -0.08 5.73 16 10 C -0.14 -3.47 8.51 37.16 0.32 -3.15 16 11 C -0.53 -14.76 8.22 -34.44 -0.28 -15.05 16 12 H 0.06 1.55 7.53 -52.49 -0.40 1.15 16 13 C 0.08 2.27 5.26 -17.82 -0.09 2.17 16 14 N -0.86 -25.02 10.93 55.43 0.61 -24.42 16 15 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 O -0.34 -8.77 9.50 -35.23 -0.33 -9.10 16 20 C -0.11 -1.95 5.61 -25.37 -0.14 -2.09 16 21 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 26 H 0.06 0.99 7.43 -51.93 -0.39 0.60 16 27 H 0.08 1.74 7.99 -51.93 -0.42 1.33 16 28 H 0.06 1.01 7.69 -51.93 -0.40 0.61 16 29 H 0.06 1.12 7.73 -51.93 -0.40 0.72 16 30 H 0.06 1.34 7.66 -51.93 -0.40 0.94 16 31 H 0.06 1.13 7.82 -51.93 -0.41 0.72 16 32 H 0.09 2.47 6.05 -51.93 -0.31 2.15 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 36 H 0.07 1.41 8.01 -51.93 -0.42 0.99 16 37 H 0.06 0.98 7.56 -51.93 -0.39 0.59 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -29.25 286.61 -7.81 -37.06 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.43 Total: -0.17 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -0.95 Total: -24.13 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.61 Total: -24.42 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.33 Total: -9.10 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.25 -7.81 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306547355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.146 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds