Wall clock time and date at job start Mon Mar 30 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.65614 * 2 1 4 4 C 1.54957 * 110.73842 * 236.80775 * 2 1 3 5 5 C 1.54472 * 104.20585 * 204.13171 * 4 2 1 6 6 C 1.53118 * 106.30154 * 23.54348 * 5 4 2 7 7 C 1.54184 * 110.48322 * 120.04576 * 6 5 4 8 8 C 1.55445 * 100.84273 * 85.45166 * 7 6 5 9 9 C 1.54455 * 102.32694 * 33.34231 * 8 7 6 10 10 C 1.52997 * 109.83448 * 98.16134 * 9 8 7 11 11 C 1.50704 * 109.91242 * 219.10617 * 9 8 7 12 12 H 1.07999 * 119.99926 * 359.74948 * 11 9 8 13 13 C 1.37877 * 120.00015 * 179.75594 * 11 9 8 14 14 N 1.31511 * 120.00155 * 179.97438 * 13 11 9 15 15 Si 1.86802 * 119.99777 * 359.97438 * 13 11 9 16 16 H 1.48499 * 109.47097 * 90.00608 * 15 13 11 17 17 H 1.48501 * 109.47121 * 210.00374 * 15 13 11 18 18 H 1.48497 * 109.47348 * 330.00230 * 15 13 11 19 19 O 1.42749 * 111.39012 * 237.78747 * 6 5 4 20 20 C 1.53507 * 107.39589 * 359.73494 * 6 5 4 21 21 H 1.09000 * 109.46775 * 181.73487 * 1 2 3 22 22 H 1.08999 * 109.47215 * 301.73740 * 1 2 3 23 23 H 1.08994 * 109.46834 * 61.73593 * 1 2 3 24 24 H 1.09004 * 110.47975 * 85.45218 * 4 2 1 25 25 H 1.08999 * 110.48768 * 322.81268 * 4 2 1 26 26 H 1.09004 * 110.09140 * 264.32991 * 5 4 2 27 27 H 1.08999 * 110.13557 * 142.77677 * 5 4 2 28 28 H 1.08997 * 111.14652 * 203.35082 * 7 6 5 29 29 H 1.08998 * 111.14010 * 327.55962 * 7 6 5 30 30 H 1.09000 * 110.83397 * 275.13553 * 8 7 6 31 31 H 1.08998 * 110.83432 * 151.54839 * 8 7 6 32 32 H 1.09002 * 109.47153 * 300.43732 * 10 9 8 33 33 H 1.09001 * 109.46832 * 180.43923 * 10 9 8 34 34 H 1.09004 * 109.47261 * 60.43904 * 10 9 8 35 35 H 0.96997 * 120.00460 * 180.02562 * 14 13 11 36 36 H 1.09002 * 110.51679 * 95.55220 * 20 6 5 37 37 H 1.08995 * 110.52388 * 218.29277 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0788 -0.7933 -1.2127 5 6 3.4911 -1.2348 -0.7693 6 6 3.4793 -1.2385 0.7619 7 6 3.7942 -2.6484 1.3005 8 6 5.3484 -2.6206 1.3015 9 6 5.6516 -1.1419 1.6286 10 6 5.9585 -0.9925 3.1200 11 6 6.8275 -0.6668 0.8146 12 1 7.3205 -1.3433 0.1322 13 6 7.2741 0.6315 0.9411 14 7 8.3006 1.0460 0.2312 15 14 6.4210 1.8018 2.1210 16 1 7.0636 1.7135 3.4568 17 1 6.5337 3.1909 1.6084 18 1 4.9875 1.4313 2.2358 19 8 4.4858 -0.3764 1.2923 20 6 2.0791 -0.7979 1.2111 21 1 -0.3633 -1.0272 0.0311 22 1 -0.3633 0.5406 0.8740 23 1 -0.3633 0.4866 -0.9051 24 1 2.1381 -0.1525 -2.0925 25 1 1.4531 -1.6628 -1.4145 26 1 4.2364 -0.5292 -1.1363 27 1 3.7065 -2.2353 -1.1444 28 1 3.4027 -2.7805 2.3091 29 1 3.4152 -3.4193 0.6296 30 1 5.7415 -2.8892 0.3210 31 1 5.7474 -3.2782 2.0738 32 1 5.1008 -1.3283 3.7029 33 1 6.1638 0.0539 3.3456 34 1 6.8295 -1.5967 3.3741 35 1 8.6150 1.9592 0.3204 36 1 1.4517 -1.6662 1.4127 37 1 2.1437 -0.1591 2.0919 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306547357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:33 Heat of formation + Delta-G solvation = -58.360468 kcal Electronic energy + Delta-G solvation = -16814.060799 eV Core-core repulsion = 14362.698282 eV Total energy + Delta-G solvation = -2451.362517 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62733 -36.47193 -32.73285 -31.35184 -30.95879 -29.21440 -27.34378 -25.12003 -24.17713 -22.35666 -19.84241 -19.40668 -18.94426 -16.53698 -15.80598 -15.04322 -14.66483 -14.01471 -13.52952 -13.24205 -13.11365 -12.58812 -12.47202 -12.34645 -12.03720 -11.80174 -11.52362 -11.42475 -11.04784 -10.76265 -10.54811 -10.40783 -10.22833 -10.09188 -9.95176 -9.83852 -9.79912 -9.40273 -8.86326 -8.48700 -8.08457 -6.04078 -4.10744 3.40549 3.50714 3.74174 4.58223 4.70926 4.91507 5.06895 5.19230 5.39731 5.49937 5.59357 5.65729 5.71581 5.86662 5.87705 5.92200 6.04048 6.12815 6.15995 6.22110 6.29058 6.35489 6.38015 6.42628 6.54919 6.56259 6.59332 6.71066 6.76912 6.84982 6.88344 7.05994 7.39579 7.76373 8.41849 8.57776 8.97329 9.62362 11.07015 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.010994 C = 0.010063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.649109 B = 2546.119808 C = 2781.725776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.116 4.116 5 C -0.132 4.132 6 C 0.104 3.896 7 C -0.146 4.146 8 C -0.128 4.128 9 C 0.191 3.809 10 C -0.147 4.147 11 C -0.520 4.520 12 H 0.075 0.925 13 C 0.084 3.916 14 N -0.897 5.897 15 Si 0.880 3.120 16 H -0.290 1.290 17 H -0.304 1.304 18 H -0.223 1.223 19 O -0.360 6.360 20 C -0.112 4.112 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.058 -4.806 1.269 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.095 0.905 4 C -0.154 4.154 5 C -0.170 4.170 6 C 0.064 3.936 7 C -0.184 4.184 8 C -0.166 4.166 9 C 0.154 3.846 10 C -0.204 4.204 11 C -0.557 4.557 12 H 0.093 0.907 13 C -0.120 4.120 14 N -0.534 5.534 15 Si 0.711 3.289 16 H -0.218 1.218 17 H -0.233 1.233 18 H -0.147 1.147 19 O -0.280 6.280 20 C -0.150 4.150 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.962 -4.463 1.251 13.766 hybrid contribution -0.118 0.495 0.523 0.730 sum -13.080 -3.967 1.774 13.783 Atomic orbital electron populations 1.21761 0.95677 1.01263 1.01114 1.22126 0.94405 0.99764 0.95385 0.90535 1.22419 0.96620 0.98990 0.97369 1.22509 0.96903 1.01655 0.95890 1.22065 0.89426 0.89489 0.92633 1.23243 0.97499 0.97138 1.00532 1.23040 0.93565 0.98246 1.01721 1.20108 0.85321 0.87488 0.91685 1.22293 0.99618 1.00874 0.97609 1.21134 1.11520 0.97933 1.25118 0.90735 1.25004 0.93715 0.98101 0.95161 1.69927 1.25250 1.17612 1.40639 0.87023 0.83539 0.78725 0.79660 1.21785 1.23254 1.14678 1.88719 1.24529 1.32916 1.81876 1.22469 0.95056 0.99383 0.98075 0.92973 0.93036 0.93057 0.92218 0.92335 0.89927 0.92181 0.91761 0.91528 0.91125 0.92045 0.94887 0.93644 0.92255 0.92733 0.91517 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.27 37.16 0.34 -1.30 16 2 C -0.10 -1.45 3.50 -88.49 -0.31 -1.76 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 4 C -0.12 -1.72 6.30 -24.93 -0.16 -1.87 16 5 C -0.13 -2.37 6.14 -25.90 -0.16 -2.53 16 6 C 0.10 1.96 1.06 -89.68 -0.10 1.87 16 7 C -0.15 -2.50 5.77 -24.81 -0.14 -2.64 16 8 C -0.13 -2.55 5.95 -24.67 -0.15 -2.69 16 9 C 0.19 4.53 0.79 -91.01 -0.07 4.46 16 10 C -0.15 -3.27 8.22 37.16 0.31 -2.97 16 11 C -0.52 -14.72 8.83 -34.44 -0.30 -15.02 16 12 H 0.07 2.27 7.77 -52.49 -0.41 1.86 16 13 C 0.08 2.46 5.45 -17.82 -0.10 2.37 16 14 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 15 Si 0.88 22.93 23.92 -169.99 -4.07 18.86 16 16 H -0.29 -7.39 6.87 56.52 0.39 -7.00 16 17 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 18 H -0.22 -5.67 5.37 56.52 0.30 -5.37 16 19 O -0.36 -8.45 7.01 -35.23 -0.25 -8.70 16 20 C -0.11 -1.80 5.55 -25.37 -0.14 -1.94 16 21 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 26 H 0.08 1.75 7.99 -51.93 -0.42 1.34 16 27 H 0.06 1.01 7.43 -51.93 -0.39 0.62 16 28 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 29 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 30 H 0.07 1.45 7.66 -51.93 -0.40 1.05 16 31 H 0.06 1.12 7.82 -51.93 -0.41 0.71 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 1.08 3.21 -51.93 -0.17 0.91 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.07 0.93 7.75 -51.93 -0.40 0.52 16 37 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 LS Contribution 277.84 15.07 4.19 4.19 Total: -1.00 -30.63 277.84 -6.77 -37.39 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.44 Total: -0.58 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -0.98 Total: -24.04 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.25 Total: -8.70 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.07 Total: 18.86 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.63 -6.77 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306547357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.967 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds