Wall clock time and date at job start Mon Mar 30 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.65614 * 2 1 4 4 C 1.54957 * 110.73842 * 236.80775 * 2 1 3 5 5 C 1.54472 * 104.20585 * 204.13171 * 4 2 1 6 6 C 1.53118 * 106.30154 * 23.54348 * 5 4 2 7 7 C 1.54184 * 110.48322 * 120.04576 * 6 5 4 8 8 C 1.55445 * 100.84273 * 85.45166 * 7 6 5 9 9 C 1.54455 * 102.32694 * 33.34231 * 8 7 6 10 10 C 1.52997 * 109.83448 * 98.16134 * 9 8 7 11 11 C 1.50704 * 109.91242 * 219.10617 * 9 8 7 12 12 H 1.07999 * 119.99926 * 359.74948 * 11 9 8 13 13 C 1.37877 * 120.00015 * 179.75594 * 11 9 8 14 14 N 1.31511 * 120.00155 * 179.97438 * 13 11 9 15 15 Si 1.86802 * 119.99777 * 359.97438 * 13 11 9 16 16 H 1.48499 * 109.47097 * 90.00608 * 15 13 11 17 17 H 1.48501 * 109.47121 * 210.00374 * 15 13 11 18 18 H 1.48497 * 109.47348 * 330.00230 * 15 13 11 19 19 O 1.42749 * 111.39012 * 237.78747 * 6 5 4 20 20 C 1.53507 * 107.39589 * 359.73494 * 6 5 4 21 21 H 1.09000 * 109.46775 * 181.73487 * 1 2 3 22 22 H 1.08999 * 109.47215 * 301.73740 * 1 2 3 23 23 H 1.08994 * 109.46834 * 61.73593 * 1 2 3 24 24 H 1.09004 * 110.47975 * 85.45218 * 4 2 1 25 25 H 1.08999 * 110.48768 * 322.81268 * 4 2 1 26 26 H 1.09004 * 110.09140 * 264.32991 * 5 4 2 27 27 H 1.08999 * 110.13557 * 142.77677 * 5 4 2 28 28 H 1.08997 * 111.14652 * 203.35082 * 7 6 5 29 29 H 1.08998 * 111.14010 * 327.55962 * 7 6 5 30 30 H 1.09000 * 110.83397 * 275.13553 * 8 7 6 31 31 H 1.08998 * 110.83432 * 151.54839 * 8 7 6 32 32 H 1.09002 * 109.47153 * 300.43732 * 10 9 8 33 33 H 1.09001 * 109.46832 * 180.43923 * 10 9 8 34 34 H 1.09004 * 109.47261 * 60.43904 * 10 9 8 35 35 H 0.96997 * 120.00460 * 180.02562 * 14 13 11 36 36 H 1.09002 * 110.51679 * 95.55220 * 20 6 5 37 37 H 1.08995 * 110.52388 * 218.29277 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0788 -0.7933 -1.2127 5 6 3.4911 -1.2348 -0.7693 6 6 3.4793 -1.2385 0.7619 7 6 3.7942 -2.6484 1.3005 8 6 5.3484 -2.6206 1.3015 9 6 5.6516 -1.1419 1.6286 10 6 5.9585 -0.9925 3.1200 11 6 6.8275 -0.6668 0.8146 12 1 7.3205 -1.3433 0.1322 13 6 7.2741 0.6315 0.9411 14 7 8.3006 1.0460 0.2312 15 14 6.4210 1.8018 2.1210 16 1 7.0636 1.7135 3.4568 17 1 6.5337 3.1909 1.6084 18 1 4.9875 1.4313 2.2358 19 8 4.4858 -0.3764 1.2923 20 6 2.0791 -0.7979 1.2111 21 1 -0.3633 -1.0272 0.0311 22 1 -0.3633 0.5406 0.8740 23 1 -0.3633 0.4866 -0.9051 24 1 2.1381 -0.1525 -2.0925 25 1 1.4531 -1.6628 -1.4145 26 1 4.2364 -0.5292 -1.1363 27 1 3.7065 -2.2353 -1.1444 28 1 3.4027 -2.7805 2.3091 29 1 3.4152 -3.4193 0.6296 30 1 5.7415 -2.8892 0.3210 31 1 5.7474 -3.2782 2.0738 32 1 5.1008 -1.3283 3.7029 33 1 6.1638 0.0539 3.3456 34 1 6.8295 -1.5967 3.3741 35 1 8.6150 1.9592 0.3204 36 1 1.4517 -1.6662 1.4127 37 1 2.1437 -0.1591 2.0919 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306547357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:33 Heat of formation + Delta-G solvation = -77.314642 kcal Electronic energy + Delta-G solvation = -16814.882714 eV Core-core repulsion = 14362.698282 eV Total energy + Delta-G solvation = -2452.184432 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15544 -37.90644 -34.77463 -33.01506 -32.57655 -30.56225 -28.70487 -27.18124 -25.48753 -23.84805 -21.45402 -20.70685 -20.52604 -18.62418 -17.31735 -16.81602 -16.22180 -15.49853 -14.97912 -14.92992 -14.62504 -14.35286 -14.14912 -13.59660 -13.46810 -13.38478 -13.05315 -12.85422 -12.65036 -12.33439 -12.02609 -11.96046 -11.78395 -11.62422 -11.55315 -11.33846 -11.19019 -11.01852 -10.74540 -10.67751 -9.88517 -8.32911 -6.41511 1.30066 1.38530 1.65384 2.40535 2.96333 3.36899 3.71047 3.76600 4.03216 4.10399 4.21611 4.31113 4.51789 4.53375 4.60106 4.71076 4.73034 4.75164 4.78870 4.92071 4.97427 5.01023 5.03310 5.07170 5.15967 5.17712 5.19904 5.29879 5.40510 5.45153 5.53836 5.65263 5.66669 5.70587 6.22758 6.61238 6.90012 7.36153 8.82210 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.010994 C = 0.010063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.649109 B = 2546.119808 C = 2781.725776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.050 0.950 4 C -0.108 4.108 5 C -0.134 4.134 6 C 0.085 3.915 7 C -0.132 4.132 8 C -0.128 4.128 9 C 0.185 3.815 10 C -0.146 4.146 11 C -0.520 4.520 12 H 0.034 0.966 13 C 0.027 3.973 14 N -0.946 5.946 15 Si 0.940 3.060 16 H -0.278 1.278 17 H -0.314 1.314 18 H -0.212 1.212 19 O -0.386 6.386 20 C -0.106 4.106 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.263 0.737 36 H 0.099 0.901 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 -6.156 2.652 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.119 4.119 3 H 0.068 0.932 4 C -0.146 4.146 5 C -0.172 4.172 6 C 0.045 3.955 7 C -0.169 4.169 8 C -0.166 4.166 9 C 0.147 3.853 10 C -0.203 4.203 11 C -0.557 4.557 12 H 0.052 0.948 13 C -0.171 4.171 14 N -0.587 5.587 15 Si 0.769 3.231 16 H -0.206 1.206 17 H -0.243 1.243 18 H -0.135 1.135 19 O -0.307 6.307 20 C -0.143 4.143 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.269 -5.833 2.641 17.484 hybrid contribution 0.939 0.839 -0.010 1.259 sum -15.330 -4.994 2.631 16.337 Atomic orbital electron populations 1.21700 0.92775 1.02653 1.01930 1.22125 0.96755 0.98144 0.94830 0.93153 1.22404 0.94710 1.00098 0.97378 1.22491 0.97867 1.00900 0.95971 1.22502 0.89886 0.90265 0.92798 1.23232 0.94706 0.96530 1.02415 1.22972 0.96361 0.95961 1.01318 1.20061 0.83891 0.89589 0.91771 1.22241 1.01313 1.00044 0.96734 1.21515 1.12899 0.97079 1.24243 0.94791 1.25805 0.94366 0.99977 0.96925 1.70066 1.27427 1.18082 1.43109 0.86082 0.83127 0.75939 0.77968 1.20551 1.24283 1.13508 1.88613 1.25148 1.34599 1.82306 1.22472 0.93432 1.00540 0.97885 0.91212 0.92436 0.92189 0.92236 0.89391 0.94749 0.91297 0.89516 0.88786 0.93017 0.90053 0.91531 0.95288 0.91734 0.92821 0.88273 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.27 71.98 0.67 -1.90 16 2 C -0.10 -2.69 3.50 -9.41 -0.03 -2.72 16 3 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 4 C -0.11 -2.93 6.30 31.76 0.20 -2.73 16 5 C -0.13 -4.73 6.14 31.13 0.19 -4.54 16 6 C 0.08 3.01 1.06 -10.18 -0.01 3.00 16 7 C -0.13 -3.98 5.77 31.84 0.18 -3.80 16 8 C -0.13 -4.90 5.95 31.93 0.19 -4.71 16 9 C 0.18 8.63 0.79 -11.05 -0.01 8.62 16 10 C -0.15 -6.22 8.22 71.98 0.59 -5.63 16 11 C -0.52 -30.48 8.83 25.60 0.23 -30.25 16 12 H 0.03 2.19 7.77 -2.91 -0.02 2.17 16 13 C 0.03 1.67 5.45 84.66 0.46 2.13 16 14 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 15 Si 0.94 48.54 23.92 68.60 1.64 50.18 16 16 H -0.28 -13.68 6.87 99.48 0.68 -13.00 16 17 H -0.31 -16.46 7.11 99.48 0.71 -15.75 16 18 H -0.21 -10.47 5.37 99.48 0.53 -9.94 16 19 O -0.39 -17.77 7.01 -148.98 -1.04 -18.82 16 20 C -0.11 -3.01 5.55 31.47 0.17 -2.84 16 21 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16 26 H 0.03 1.51 7.99 -2.39 -0.02 1.49 16 27 H 0.07 2.23 7.43 -2.39 -0.02 2.21 16 28 H 0.09 2.28 8.06 -2.39 -0.02 2.26 16 29 H 0.09 2.36 7.69 -2.39 -0.02 2.34 16 30 H 0.05 2.13 7.66 -2.39 -0.02 2.11 16 31 H 0.08 2.74 7.82 -2.39 -0.02 2.73 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.03 1.31 3.21 -2.39 -0.01 1.31 16 34 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 36 H 0.10 2.20 7.75 -2.39 -0.02 2.18 16 37 H 0.06 1.82 8.07 -2.39 -0.02 1.80 16 Total: -1.00 -69.38 277.84 4.55 -64.83 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.82 Total: 10.45 kcal Atomic # 6 Polarization: -48.19 SS G_CDS: 2.83 Total: -45.36 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.30 Total: -61.29 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -1.04 Total: -18.82 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 1.64 Total: 50.18 kcal Total: -69.38 4.55 -64.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306547357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.483 kcal (2) G-P(sol) polarization free energy of solvation -69.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds