Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47414 * 2 1 4 4 C 1.53005 * 109.47077 * 119.99918 * 2 1 3 5 5 H 1.08996 * 109.63719 * 299.58361 * 4 2 1 6 6 C 1.53022 * 109.63957 * 59.99718 * 4 2 1 7 7 C 1.50066 * 110.14786 * 169.12198 * 6 4 2 8 8 C 1.29445 * 124.07462 * 342.87404 * 7 6 4 9 9 C 1.50700 * 117.96565 * 180.44278 * 8 7 6 10 10 C 1.50697 * 109.47149 * 94.99755 * 9 8 7 11 11 H 1.08002 * 120.00121 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99987 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99568 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47398 * 90.00370 * 14 12 10 16 16 H 1.48499 * 109.46747 * 209.99768 * 14 12 10 17 17 H 1.48491 * 109.47350 * 329.99583 * 14 12 10 18 18 C 1.50074 * 124.07477 * 0.46305 * 8 7 6 19 19 H 1.09002 * 109.35609 * 222.66402 * 18 8 7 20 20 O 1.42900 * 109.35414 * 103.08023 * 18 8 7 21 21 C 1.53016 * 110.14671 * 342.87319 * 18 8 7 22 22 H 1.09001 * 109.47377 * 300.00297 * 1 2 3 23 23 H 1.09002 * 109.46735 * 60.00023 * 1 2 3 24 24 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47377 * 239.99703 * 2 1 3 26 26 H 1.09002 * 109.47570 * 59.99749 * 3 2 1 27 27 H 1.09000 * 109.47131 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47151 * 299.99722 * 3 2 1 29 29 H 1.09003 * 109.35898 * 48.91786 * 6 4 2 30 30 H 1.08998 * 109.24750 * 289.26160 * 6 4 2 31 31 H 1.08002 * 117.96445 * 162.58658 * 7 6 4 32 32 H 1.08998 * 109.47610 * 215.00055 * 9 8 7 33 33 H 1.09011 * 109.46934 * 334.99939 * 9 8 7 34 34 H 0.97003 * 119.99913 * 180.02562 * 13 12 10 35 35 H 0.96695 * 114.00226 * 59.31070 * 20 18 8 36 36 H 1.09003 * 109.64533 * 289.75036 * 21 18 8 37 37 H 1.09000 * 109.64519 * 169.11862 * 21 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6842 -0.2053 2.1410 6 6 1.5319 -2.1647 1.2532 7 6 2.2310 -2.9558 2.3198 8 6 3.3313 -2.5865 2.8930 9 6 3.9207 -3.4937 3.9421 10 6 4.9560 -4.3874 3.3092 11 1 5.1665 -4.3062 2.2530 12 6 5.6346 -5.3087 4.0786 13 7 6.5377 -6.0889 3.5261 14 14 5.2699 -5.4496 5.9052 15 1 4.1851 -6.4410 6.1185 16 1 6.4930 -5.8926 6.6213 17 1 4.8419 -4.1273 6.4280 18 6 4.0564 -1.3108 2.5781 19 1 5.1269 -1.5082 2.5219 20 8 3.8069 -0.3566 3.6122 21 6 3.5736 -0.7467 1.2401 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.7257 -2.6186 0.2813 30 1 0.4591 -2.1675 1.4459 31 1 1.7860 -3.8891 2.6317 32 1 4.3877 -2.8922 4.7219 33 1 3.1310 -4.1052 4.3788 34 1 7.0148 -6.7373 4.0673 35 1 4.0878 -0.6464 4.4909 36 1 3.9247 -1.3817 0.4266 37 1 3.9561 0.2657 1.1099 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306632644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = -68.927955 kcal Electronic energy + Delta-G solvation = -15916.655968 eV Core-core repulsion = 13464.835211 eV Total energy + Delta-G solvation = -2451.820758 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.26035 -36.23537 -34.36563 -32.73669 -30.79357 -29.56498 -27.11932 -26.82930 -23.31838 -22.08836 -21.12296 -19.66070 -18.00308 -16.78270 -15.97619 -15.25156 -14.37374 -14.28014 -14.09368 -13.72028 -13.27172 -12.88383 -12.70580 -12.42747 -12.29172 -12.16797 -11.92412 -11.51576 -11.39876 -11.11303 -10.93299 -10.62013 -10.36457 -10.32303 -10.18100 -10.08734 -9.53918 -9.34993 -9.08039 -8.59786 -7.97477 -6.09575 -4.08318 3.02283 3.26435 3.34354 3.36412 4.39403 4.78339 4.90169 4.91345 5.05856 5.21927 5.43080 5.47797 5.53916 5.65123 5.72625 5.79626 5.87182 5.90747 5.93983 6.09720 6.10107 6.18798 6.20039 6.26053 6.34317 6.43461 6.51315 6.73224 6.79493 6.98428 7.05060 7.39788 7.68394 7.88504 8.12671 8.48847 8.95774 9.51582 11.03486 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.046322 B = 0.006572 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.316000 B = 4259.752306 C = 4364.665505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.078 4.078 5 H 0.076 0.924 6 C -0.079 4.079 7 C -0.170 4.170 8 C -0.114 4.114 9 C 0.012 3.988 10 C -0.513 4.513 11 H 0.073 0.927 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.879 3.121 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.266 1.266 18 C 0.144 3.856 19 H 0.066 0.934 20 O -0.568 6.568 21 C -0.107 4.107 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.264 0.736 35 H 0.376 0.624 36 H 0.073 0.927 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 11.743 -4.274 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.096 4.096 5 H 0.095 0.905 6 C -0.116 4.116 7 C -0.188 4.188 8 C -0.115 4.115 9 C -0.025 4.025 10 C -0.551 4.551 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.706 3.294 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.190 1.190 18 C 0.086 3.914 19 H 0.084 0.916 20 O -0.374 6.374 21 C -0.144 4.144 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.223 0.777 36 H 0.092 0.908 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.504 11.932 -4.741 15.975 hybrid contribution 0.199 -0.809 1.441 1.665 sum -9.305 11.123 -3.300 14.873 Atomic orbital electron populations 1.21866 0.95618 1.01764 1.01191 1.21157 0.95457 0.96084 0.98387 1.21884 1.01350 0.96083 1.01161 1.21214 0.95168 0.95534 0.97713 0.90511 1.20474 0.98962 0.94123 0.97996 1.21733 0.97603 0.99976 0.99529 1.21570 0.94848 0.95902 0.99156 1.18863 0.96250 0.94012 0.93384 1.20972 1.19329 1.17538 0.97262 0.90921 1.25023 0.94673 0.95235 0.98416 1.69904 1.25343 1.22451 1.36225 0.86792 0.77880 0.78900 0.85826 1.20254 1.21282 1.19044 1.20495 0.98087 0.85563 0.87242 0.91602 1.86406 1.86986 1.44414 1.19636 1.21736 0.95722 1.01240 0.95747 0.92860 0.93257 0.92426 0.91465 0.92782 0.92323 0.93303 0.91689 0.91902 0.88289 0.96421 0.96308 0.92638 0.77684 0.90806 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.85 37.16 0.33 -1.22 16 2 C -0.09 -1.09 2.48 -90.62 -0.22 -1.31 16 3 C -0.15 -1.61 8.88 37.16 0.33 -1.28 16 4 C -0.08 -1.12 1.80 -90.40 -0.16 -1.28 16 5 H 0.08 1.21 7.79 -51.93 -0.40 0.80 16 6 C -0.08 -1.20 4.75 -28.18 -0.13 -1.33 16 7 C -0.17 -3.23 9.37 -35.90 -0.34 -3.57 16 8 C -0.11 -2.35 4.60 -100.94 -0.46 -2.82 16 9 C 0.01 0.29 4.05 -29.04 -0.12 0.17 16 10 C -0.51 -14.48 9.65 -34.44 -0.33 -14.81 16 11 H 0.07 2.24 7.98 -52.49 -0.42 1.82 16 12 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 13 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 14 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 18 C 0.14 2.67 3.46 -28.18 -0.10 2.57 16 19 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 20 O -0.57 -9.85 12.91 -35.23 -0.45 -10.30 16 21 C -0.11 -1.69 4.81 -26.52 -0.13 -1.82 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.60 6.70 -51.93 -0.35 0.25 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.65 6.33 -51.93 -0.33 0.32 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.06 0.86 7.05 -51.93 -0.37 0.50 16 31 H 0.10 1.93 7.74 -52.49 -0.41 1.53 16 32 H 0.02 0.41 6.71 -51.93 -0.35 0.06 16 33 H 0.02 0.45 7.22 -51.92 -0.37 0.07 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.38 5.67 8.60 45.56 0.39 6.06 16 36 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 37 H 0.07 1.02 6.16 -51.93 -0.32 0.70 16 LS Contribution 288.94 15.07 4.35 4.35 Total: -1.00 -30.26 288.94 -6.90 -37.16 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.47 Total: 3.63 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -1.44 Total: -24.84 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.77 Total: -26.78 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.45 Total: -10.30 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.26 -6.90 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306632644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.764 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds