Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47414 * 2 1 4 4 C 1.53005 * 109.47077 * 119.99918 * 2 1 3 5 5 H 1.08996 * 109.63719 * 299.58361 * 4 2 1 6 6 C 1.53022 * 109.63957 * 59.99718 * 4 2 1 7 7 C 1.50066 * 110.14786 * 169.12198 * 6 4 2 8 8 C 1.29445 * 124.07462 * 342.87404 * 7 6 4 9 9 C 1.50700 * 117.96565 * 180.44278 * 8 7 6 10 10 C 1.50697 * 109.47149 * 94.99755 * 9 8 7 11 11 H 1.08002 * 120.00121 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99987 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99568 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47398 * 90.00370 * 14 12 10 16 16 H 1.48499 * 109.46747 * 209.99768 * 14 12 10 17 17 H 1.48491 * 109.47350 * 329.99583 * 14 12 10 18 18 C 1.50074 * 124.07477 * 0.46305 * 8 7 6 19 19 H 1.09002 * 109.35609 * 222.66402 * 18 8 7 20 20 O 1.42900 * 109.35414 * 103.08023 * 18 8 7 21 21 C 1.53016 * 110.14671 * 342.87319 * 18 8 7 22 22 H 1.09001 * 109.47377 * 300.00297 * 1 2 3 23 23 H 1.09002 * 109.46735 * 60.00023 * 1 2 3 24 24 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47377 * 239.99703 * 2 1 3 26 26 H 1.09002 * 109.47570 * 59.99749 * 3 2 1 27 27 H 1.09000 * 109.47131 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47151 * 299.99722 * 3 2 1 29 29 H 1.09003 * 109.35898 * 48.91786 * 6 4 2 30 30 H 1.08998 * 109.24750 * 289.26160 * 6 4 2 31 31 H 1.08002 * 117.96445 * 162.58658 * 7 6 4 32 32 H 1.08998 * 109.47610 * 215.00055 * 9 8 7 33 33 H 1.09011 * 109.46934 * 334.99939 * 9 8 7 34 34 H 0.97003 * 119.99913 * 180.02562 * 13 12 10 35 35 H 0.96695 * 114.00226 * 59.31070 * 20 18 8 36 36 H 1.09003 * 109.64533 * 289.75036 * 21 18 8 37 37 H 1.09000 * 109.64519 * 169.11862 * 21 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6842 -0.2053 2.1410 6 6 1.5319 -2.1647 1.2532 7 6 2.2310 -2.9558 2.3198 8 6 3.3313 -2.5865 2.8930 9 6 3.9207 -3.4937 3.9421 10 6 4.9560 -4.3874 3.3092 11 1 5.1665 -4.3062 2.2530 12 6 5.6346 -5.3087 4.0786 13 7 6.5377 -6.0889 3.5261 14 14 5.2699 -5.4496 5.9052 15 1 4.1851 -6.4410 6.1185 16 1 6.4930 -5.8926 6.6213 17 1 4.8419 -4.1273 6.4280 18 6 4.0564 -1.3108 2.5781 19 1 5.1269 -1.5082 2.5219 20 8 3.8069 -0.3566 3.6122 21 6 3.5736 -0.7467 1.2401 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.7257 -2.6186 0.2813 30 1 0.4591 -2.1675 1.4459 31 1 1.7860 -3.8891 2.6317 32 1 4.3877 -2.8922 4.7219 33 1 3.1310 -4.1052 4.3788 34 1 7.0148 -6.7373 4.0673 35 1 4.0878 -0.6464 4.4909 36 1 3.9247 -1.3817 0.4266 37 1 3.9561 0.2657 1.1099 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306632644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = -88.217456 kcal Electronic energy + Delta-G solvation = -15917.492424 eV Core-core repulsion = 13464.835211 eV Total energy + Delta-G solvation = -2452.657213 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59130 -37.44512 -35.95566 -34.62322 -32.38014 -30.90078 -28.74146 -27.80423 -24.92915 -23.51962 -22.64774 -20.71542 -19.45095 -18.96183 -17.32991 -16.82501 -16.05216 -15.58623 -15.37886 -14.86956 -14.82912 -14.20626 -14.15359 -14.02359 -13.84436 -13.34782 -13.20484 -12.90139 -12.71677 -12.41518 -12.22463 -12.11595 -11.90451 -11.80285 -11.64847 -11.40049 -11.27128 -10.83285 -10.75116 -10.53750 -9.59004 -8.32287 -6.36921 1.33842 1.34838 1.45412 1.46760 2.32614 3.01915 3.49073 3.74517 3.80311 3.99835 4.16254 4.27757 4.38730 4.48077 4.61840 4.63123 4.74793 4.82506 4.88458 4.98028 5.00787 5.04484 5.06217 5.11264 5.16401 5.20040 5.23302 5.38077 5.44209 5.54813 5.56718 5.67485 5.83497 6.25138 6.30391 6.69179 6.81094 7.26968 8.84273 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.046322 B = 0.006572 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.316000 B = 4259.752306 C = 4364.665505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.070 4.070 5 H 0.067 0.933 6 C -0.077 4.077 7 C -0.160 4.160 8 C -0.142 4.142 9 C 0.017 3.983 10 C -0.520 4.520 11 H 0.028 0.972 12 C 0.007 3.993 13 N -0.949 5.949 14 Si 0.950 3.050 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.245 1.245 18 C 0.148 3.852 19 H 0.040 0.960 20 O -0.567 6.567 21 C -0.106 4.106 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.026 0.974 33 H 0.019 0.981 34 H 0.267 0.733 35 H 0.385 0.615 36 H 0.069 0.931 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.221 13.095 -3.872 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.088 4.088 5 H 0.085 0.915 6 C -0.114 4.114 7 C -0.178 4.178 8 C -0.142 4.142 9 C -0.021 4.021 10 C -0.558 4.558 11 H 0.047 0.953 12 C -0.190 4.190 13 N -0.590 5.590 14 Si 0.773 3.227 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.168 1.168 18 C 0.090 3.910 19 H 0.058 0.942 20 O -0.374 6.374 21 C -0.143 4.143 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.233 0.767 36 H 0.088 0.912 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.340 13.304 -4.340 18.012 hybrid contribution 0.771 -1.257 1.237 1.925 sum -10.568 12.047 -3.102 16.323 Atomic orbital electron populations 1.21855 0.94344 1.02102 1.01981 1.21125 0.96480 0.96252 0.96850 1.21873 1.01022 0.95582 1.01901 1.21143 0.93796 0.95059 0.98806 0.91501 1.20543 0.99793 0.94188 0.96835 1.22054 0.96884 0.99605 0.99250 1.21538 0.96059 0.96848 0.99779 1.18756 0.95034 0.93893 0.94378 1.21217 1.20510 1.18507 0.95560 0.95326 1.25997 0.94317 0.94728 1.03986 1.70060 1.26863 1.23584 1.38456 0.85658 0.77958 0.79969 0.79091 1.19380 1.20820 1.16791 1.20395 0.96426 0.85255 0.88922 0.94181 1.86391 1.86883 1.44032 1.20075 1.21750 0.97070 1.01605 0.93847 0.92860 0.91748 0.92323 0.91151 0.93005 0.92851 0.91632 0.90806 0.89677 0.89183 0.95604 0.96242 0.92409 0.76694 0.91209 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.85 71.98 0.64 -1.94 16 2 C -0.09 -1.84 2.48 -10.79 -0.03 -1.87 16 3 C -0.15 -2.81 8.88 71.98 0.64 -2.17 16 4 C -0.07 -1.86 1.80 -10.65 -0.02 -1.88 16 5 H 0.07 1.95 7.79 -2.39 -0.02 1.93 16 6 C -0.08 -2.19 4.75 29.66 0.14 -2.05 16 7 C -0.16 -5.93 9.37 27.03 0.25 -5.68 16 8 C -0.14 -5.83 4.60 -15.10 -0.07 -5.89 16 9 C 0.02 0.79 4.05 29.10 0.12 0.91 16 10 C -0.52 -30.20 9.65 25.60 0.25 -29.95 16 11 H 0.03 1.85 7.98 -2.91 -0.02 1.83 16 12 C 0.01 0.39 5.47 84.66 0.46 0.85 16 13 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 14 Si 0.95 44.09 27.47 68.60 1.88 45.98 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 18 C 0.15 5.48 3.46 29.66 0.10 5.59 16 19 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 20 O -0.57 -19.07 12.91 -148.98 -1.92 -21.00 16 21 C -0.11 -3.22 4.81 30.73 0.15 -3.08 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 1.02 6.70 -2.39 -0.02 1.01 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.07 6.33 -2.39 -0.02 1.05 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 2.02 8.10 -2.39 -0.02 2.00 16 30 H 0.08 2.08 7.05 -2.39 -0.02 2.06 16 31 H 0.09 3.46 7.74 -2.91 -0.02 3.44 16 32 H 0.03 1.17 6.71 -2.39 -0.02 1.16 16 33 H 0.02 0.91 7.22 -2.38 -0.02 0.89 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.38 11.21 8.60 -74.06 -0.64 10.57 16 36 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 37 H 0.08 2.31 6.16 -2.39 -0.01 2.29 16 Total: -1.00 -65.88 288.94 3.24 -62.64 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.34 Total: 18.94 kcal Atomic # 6 Polarization: -49.79 SS G_CDS: 2.63 Total: -47.16 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.30 Total: -59.41 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -1.92 Total: -21.00 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -65.88 3.24 -62.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306632644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.574 kcal (2) G-P(sol) polarization free energy of solvation -65.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds