Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00415 * 2 1 4 4 H 1.48501 * 109.47054 * 269.99764 * 3 2 1 5 5 H 1.48500 * 109.47026 * 29.99638 * 3 2 1 6 6 H 1.48495 * 109.47438 * 149.99896 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00145 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99888 * 180.02562 * 7 2 1 10 10 N 1.46908 * 109.46597 * 180.02562 * 9 7 2 11 11 C 1.46959 * 110.99744 * 293.94906 * 10 9 7 12 12 C 1.53046 * 109.42426 * 176.82688 * 11 10 9 13 13 N 1.46978 * 109.41331 * 58.24669 * 12 11 10 14 14 C 1.46918 * 110.81578 * 300.85128 * 13 12 11 15 15 H 1.09006 * 109.42368 * 299.64683 * 14 13 12 16 16 C 1.52898 * 109.65571 * 179.79740 * 14 13 12 17 17 C 1.53000 * 109.56272 * 299.62017 * 16 14 13 18 18 C 1.53020 * 109.40410 * 300.05279 * 17 16 14 19 19 C 1.52977 * 109.43398 * 60.15008 * 18 17 16 20 20 C 1.47052 * 110.99493 * 170.29864 * 10 9 7 21 21 H 1.09007 * 109.56244 * 303.70772 * 20 10 9 22 22 H 0.97002 * 119.99535 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47058 * 60.00141 * 9 7 2 24 24 H 1.09001 * 109.47204 * 299.99915 * 9 7 2 25 25 H 1.08996 * 109.47980 * 56.84829 * 11 10 9 26 26 H 1.09000 * 109.49080 * 296.81672 * 11 10 9 27 27 H 1.08999 * 109.47728 * 298.26267 * 12 11 10 28 28 H 1.09007 * 109.48588 * 178.23133 * 12 11 10 29 29 H 1.00901 * 111.00141 * 64.67068 * 13 12 11 30 30 H 1.08994 * 109.45847 * 179.59251 * 16 14 13 31 31 H 1.09002 * 109.43863 * 59.63422 * 16 14 13 32 32 H 1.08992 * 109.47933 * 180.02562 * 17 16 14 33 33 H 1.08996 * 109.49390 * 60.03688 * 17 16 14 34 34 H 1.09004 * 109.47525 * 300.15964 * 18 17 16 35 35 H 1.08993 * 109.47689 * 180.14222 * 18 17 16 36 36 H 1.09001 * 109.45689 * 179.84395 * 19 18 17 37 37 H 1.08997 * 109.45179 * 59.87640 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0010 -2.5793 0.0010 11 6 3.6509 -3.2616 1.2546 12 6 4.1070 -4.7209 1.1843 13 7 5.5567 -4.7687 0.9471 14 6 5.9034 -4.0854 -0.3064 15 1 5.3997 -4.5772 -1.1387 16 6 7.4156 -4.1466 -0.5243 17 6 8.1290 -3.4510 0.6368 18 6 7.6816 -1.9893 0.7059 19 6 6.1694 -1.9299 0.9298 20 6 5.4526 -2.6250 -0.2298 21 1 5.6899 -2.1153 -1.1637 22 1 -0.4849 0.8401 -0.0004 23 1 3.8745 -0.6802 0.8911 24 1 3.8752 -0.6805 -0.8889 25 1 2.5712 -3.2250 1.3991 26 1 4.1465 -2.7658 2.0893 27 1 3.5883 -5.2249 0.3689 28 1 3.8760 -5.2198 2.1256 29 1 6.0637 -4.3752 1.7257 30 1 7.6684 -3.6452 -1.4584 31 1 7.7331 -5.1882 -0.5737 32 1 9.2067 -3.4950 0.4799 33 1 7.8775 -3.9527 1.5712 34 1 7.9304 -1.4884 -0.2297 35 1 8.1910 -1.4919 1.5311 36 1 5.8507 -0.8888 0.9819 37 1 5.9209 -2.4330 1.8643 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306704647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = -1.732561 kcal Electronic energy + Delta-G solvation = -16615.268392 eV Core-core repulsion = 14198.654196 eV Total energy + Delta-G solvation = -2416.614196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18054 -35.64337 -34.07830 -32.35496 -30.18098 -29.52156 -27.73586 -24.98164 -22.70430 -22.49011 -21.76048 -19.90223 -18.27988 -16.90678 -15.79842 -15.30947 -15.13497 -14.51096 -14.27979 -13.51211 -13.32508 -13.29665 -12.87499 -12.59725 -12.38956 -12.03764 -11.84290 -11.43197 -11.17518 -10.95836 -10.86094 -10.68506 -10.56048 -10.27662 -10.03261 -9.94127 -9.84448 -9.29946 -8.59003 -8.06199 -7.31284 -6.07634 -4.04781 3.25565 3.33038 3.34527 4.39161 4.49155 4.59528 4.88636 4.93891 5.14775 5.24812 5.33241 5.39530 5.56900 5.59948 5.70297 5.74098 5.75024 5.82012 5.88401 6.01082 6.14512 6.15941 6.23584 6.37440 6.39412 6.40460 6.58674 6.64175 6.82520 6.97909 7.30574 7.57588 7.64565 7.88413 8.03721 8.63718 9.00695 9.54225 11.05505 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.037111 B = 0.008770 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.307709 B = 3191.896427 C = 3687.650520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.517 5.517 11 C 0.024 3.976 12 C 0.058 3.942 13 N -0.682 5.682 14 C 0.096 3.904 15 H 0.085 0.915 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.156 4.156 20 C 0.050 3.950 21 H 0.078 0.922 22 H 0.263 0.737 23 H -0.011 1.011 24 H 0.022 0.978 25 H 0.091 0.909 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.332 0.668 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.886 -6.161 1.962 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.239 5.239 11 C -0.106 4.106 12 C -0.072 4.072 13 N -0.312 5.312 14 C -0.014 4.014 15 H 0.103 0.897 16 C -0.148 4.148 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.196 4.196 20 C -0.061 4.061 21 H 0.096 0.904 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.040 0.960 25 H 0.109 0.891 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.151 0.849 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.445 -6.934 1.284 16.074 hybrid contribution 0.542 2.559 0.931 2.776 sum 14.987 -4.375 2.215 15.768 Atomic orbital electron populations 1.69893 1.06093 1.26815 1.51091 1.24896 0.94730 0.98807 0.94879 0.86873 0.80243 0.84110 0.78589 1.20139 1.21184 1.19412 1.21043 0.88764 0.94692 1.50260 0.90173 1.20166 0.96914 0.84357 0.94916 1.62333 1.09225 1.18793 1.33590 1.22710 1.02898 0.94280 0.90717 1.22127 0.87832 0.95585 1.01675 1.60957 1.06982 1.58321 1.04983 1.21508 0.94744 0.91724 0.93435 0.89656 1.21533 0.94315 1.00737 0.98264 1.21538 0.99392 0.95626 0.99175 1.21500 0.95853 0.96559 1.01468 1.22250 0.95339 1.01746 1.00217 1.22445 0.89154 0.96659 0.97824 0.90392 0.92662 0.99304 0.96017 0.89097 0.95942 0.90321 0.91094 0.84887 0.91657 0.91309 0.92249 0.91916 0.92077 0.92536 0.91677 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.54 9.03 -34.44 -0.31 -14.85 16 8 H 0.08 2.49 7.36 -52.48 -0.39 2.10 16 9 C 0.16 3.97 3.19 -4.97 -0.02 3.95 16 10 N -0.52 -10.77 4.66 -227.84 -1.06 -11.84 16 11 C 0.02 0.45 5.03 -3.77 -0.02 0.43 16 12 C 0.06 0.90 6.72 -3.76 -0.03 0.87 16 13 N -0.68 -9.75 6.47 -106.66 -0.69 -10.44 16 14 C 0.10 1.41 2.87 -67.74 -0.19 1.21 16 15 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 16 C -0.11 -1.29 5.63 -26.78 -0.15 -1.44 16 17 C -0.12 -1.31 5.67 -26.72 -0.15 -1.46 16 18 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 19 C -0.16 -2.43 4.24 -26.73 -0.11 -2.55 16 20 C 0.05 0.85 2.28 -67.60 -0.15 0.70 16 21 H 0.08 1.36 8.07 -51.93 -0.42 0.95 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H -0.01 -0.26 5.95 -51.93 -0.31 -0.57 16 24 H 0.02 0.54 7.45 -51.93 -0.39 0.15 16 25 H 0.09 1.96 6.78 -51.93 -0.35 1.61 16 26 H 0.02 0.43 6.28 -51.93 -0.33 0.10 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.33 4.51 5.32 -39.29 -0.21 4.30 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.69 6.60 -51.93 -0.34 0.35 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.15 6.73 -51.93 -0.35 0.80 16 37 H 0.06 0.94 5.01 -51.93 -0.26 0.68 16 LS Contribution 268.37 15.07 4.04 4.04 Total: -1.00 -29.69 268.37 -8.88 -38.58 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.89 Total: 2.36 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.39 Total: -12.82 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.98 Total: -49.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.69 -8.88 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306704647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.845 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds