Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00415 * 2 1 4 4 H 1.48501 * 109.47054 * 269.99764 * 3 2 1 5 5 H 1.48500 * 109.47026 * 29.99638 * 3 2 1 6 6 H 1.48495 * 109.47438 * 149.99896 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00145 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99888 * 180.02562 * 7 2 1 10 10 N 1.46908 * 109.46597 * 180.02562 * 9 7 2 11 11 C 1.46959 * 110.99744 * 293.94906 * 10 9 7 12 12 C 1.53046 * 109.42426 * 176.82688 * 11 10 9 13 13 N 1.46978 * 109.41331 * 58.24669 * 12 11 10 14 14 C 1.46918 * 110.81578 * 300.85128 * 13 12 11 15 15 H 1.09006 * 109.42368 * 299.64683 * 14 13 12 16 16 C 1.52898 * 109.65571 * 179.79740 * 14 13 12 17 17 C 1.53000 * 109.56272 * 299.62017 * 16 14 13 18 18 C 1.53020 * 109.40410 * 300.05279 * 17 16 14 19 19 C 1.52977 * 109.43398 * 60.15008 * 18 17 16 20 20 C 1.47052 * 110.99493 * 170.29864 * 10 9 7 21 21 H 1.09007 * 109.56244 * 303.70772 * 20 10 9 22 22 H 0.97002 * 119.99535 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47058 * 60.00141 * 9 7 2 24 24 H 1.09001 * 109.47204 * 299.99915 * 9 7 2 25 25 H 1.08996 * 109.47980 * 56.84829 * 11 10 9 26 26 H 1.09000 * 109.49080 * 296.81672 * 11 10 9 27 27 H 1.08999 * 109.47728 * 298.26267 * 12 11 10 28 28 H 1.09007 * 109.48588 * 178.23133 * 12 11 10 29 29 H 1.00901 * 111.00141 * 64.67068 * 13 12 11 30 30 H 1.08994 * 109.45847 * 179.59251 * 16 14 13 31 31 H 1.09002 * 109.43863 * 59.63422 * 16 14 13 32 32 H 1.08992 * 109.47933 * 180.02562 * 17 16 14 33 33 H 1.08996 * 109.49390 * 60.03688 * 17 16 14 34 34 H 1.09004 * 109.47525 * 300.15964 * 18 17 16 35 35 H 1.08993 * 109.47689 * 180.14222 * 18 17 16 36 36 H 1.09001 * 109.45689 * 179.84395 * 19 18 17 37 37 H 1.08997 * 109.45179 * 59.87640 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0010 -2.5793 0.0010 11 6 3.6509 -3.2616 1.2546 12 6 4.1070 -4.7209 1.1843 13 7 5.5567 -4.7687 0.9471 14 6 5.9034 -4.0854 -0.3064 15 1 5.3997 -4.5772 -1.1387 16 6 7.4156 -4.1466 -0.5243 17 6 8.1290 -3.4510 0.6368 18 6 7.6816 -1.9893 0.7059 19 6 6.1694 -1.9299 0.9298 20 6 5.4526 -2.6250 -0.2298 21 1 5.6899 -2.1153 -1.1637 22 1 -0.4849 0.8401 -0.0004 23 1 3.8745 -0.6802 0.8911 24 1 3.8752 -0.6805 -0.8889 25 1 2.5712 -3.2250 1.3991 26 1 4.1465 -2.7658 2.0893 27 1 3.5883 -5.2249 0.3689 28 1 3.8760 -5.2198 2.1256 29 1 6.0637 -4.3752 1.7257 30 1 7.6684 -3.6452 -1.4584 31 1 7.7331 -5.1882 -0.5737 32 1 9.2067 -3.4950 0.4799 33 1 7.8775 -3.9527 1.5712 34 1 7.9304 -1.4884 -0.2297 35 1 8.1910 -1.4919 1.5311 36 1 5.8507 -0.8888 0.9819 37 1 5.9209 -2.4330 1.8643 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306704647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = -23.722668 kcal Electronic energy + Delta-G solvation = -16616.221954 eV Core-core repulsion = 14198.654196 eV Total energy + Delta-G solvation = -2417.567758 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.49172 -37.04021 -35.49362 -34.41961 -31.40741 -30.89562 -29.47803 -26.52134 -24.10702 -23.89787 -23.11848 -21.34462 -19.50895 -19.05076 -17.07416 -16.80735 -16.52550 -16.13277 -15.79690 -15.04047 -14.92078 -14.56967 -14.36931 -14.05100 -13.80664 -13.45312 -13.08765 -12.97747 -12.63844 -12.49330 -12.38475 -12.14396 -12.08310 -11.86186 -11.52823 -11.22643 -11.19898 -11.10489 -10.82308 -9.40024 -8.92384 -8.33828 -6.37153 1.28544 1.29615 1.40233 2.28353 2.98344 3.09893 3.32186 3.80699 3.81642 4.06608 4.15552 4.23787 4.27083 4.33257 4.44168 4.50838 4.57440 4.65861 4.72940 4.80809 4.89941 4.94889 4.99571 5.06074 5.17740 5.20235 5.23742 5.34795 5.40122 5.48221 5.52089 5.93771 6.03435 6.32718 6.50877 6.61897 6.69020 7.26443 8.82831 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.037111 B = 0.008770 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.307709 B = 3191.896427 C = 3687.650520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.518 4.518 8 H 0.037 0.963 9 C 0.177 3.823 10 N -0.536 5.536 11 C 0.028 3.972 12 C 0.068 3.932 13 N -0.670 5.670 14 C 0.100 3.900 15 H 0.071 0.929 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.110 4.110 19 C -0.151 4.151 20 C 0.047 3.953 21 H 0.072 0.928 22 H 0.268 0.732 23 H -0.014 1.014 24 H 0.020 0.980 25 H 0.053 0.947 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.341 0.659 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.092 -6.133 2.274 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.556 4.556 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.259 5.259 11 C -0.102 4.102 12 C -0.062 4.062 13 N -0.300 5.300 14 C -0.011 4.011 15 H 0.089 0.911 16 C -0.142 4.142 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.190 4.190 20 C -0.063 4.063 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.004 0.996 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.161 0.839 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.680 -6.928 1.600 19.056 hybrid contribution -0.524 2.464 0.821 2.649 sum 17.156 -4.465 2.421 17.891 Atomic orbital electron populations 1.70045 1.08029 1.28140 1.52428 1.25833 0.95619 1.03046 0.94337 0.85723 0.79183 0.78795 0.79287 1.18937 1.20413 1.17967 1.21271 0.91121 0.93240 1.50014 0.94489 1.19851 0.94024 0.86703 0.94402 1.62226 1.12382 1.16659 1.34680 1.22674 1.00689 0.96639 0.90151 1.22035 0.88699 0.92870 1.02570 1.60967 1.05812 1.57967 1.05291 1.21528 0.97017 0.89516 0.93041 0.91108 1.21513 0.91545 1.01941 0.99170 1.21525 1.00723 0.94136 0.98796 1.21482 0.93012 0.98069 1.02256 1.22168 0.97839 0.99762 0.99227 1.22587 0.86667 0.98827 0.98207 0.91015 0.92346 0.99625 0.96187 0.92819 0.95718 0.91396 0.88670 0.83888 0.90811 0.89942 0.89743 0.91638 0.91698 0.91132 0.94174 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 2 C 0.01 0.54 5.47 84.66 0.46 1.01 16 3 Si 0.95 45.05 27.47 68.60 1.88 46.94 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.51 6.54 99.48 0.65 -10.86 16 7 C -0.52 -30.82 9.03 25.60 0.23 -30.59 16 8 H 0.04 2.45 7.36 -2.91 -0.02 2.43 16 9 C 0.18 8.80 3.19 85.56 0.27 9.07 16 10 N -0.54 -22.77 4.66 -874.74 -4.07 -26.85 16 11 C 0.03 1.10 5.03 86.31 0.43 1.54 16 12 C 0.07 2.09 6.72 86.30 0.58 2.67 16 13 N -0.67 -17.69 6.47 -491.37 -3.18 -20.86 16 14 C 0.10 2.72 2.87 44.89 0.13 2.85 16 15 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 16 C -0.10 -2.05 5.63 30.56 0.17 -1.88 16 17 C -0.11 -2.01 5.67 30.60 0.17 -1.83 16 18 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 19 C -0.15 -4.44 4.24 30.60 0.13 -4.31 16 20 C 0.05 1.57 2.28 44.91 0.10 1.67 16 21 H 0.07 2.45 8.07 -2.38 -0.02 2.43 16 22 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 23 H -0.01 -0.69 5.95 -2.39 -0.01 -0.70 16 24 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 25 H 0.05 2.46 6.78 -2.39 -0.02 2.45 16 26 H 0.02 0.94 6.28 -2.39 -0.01 0.93 16 27 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.34 8.25 5.32 -89.69 -0.48 7.77 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.15 6.60 -2.39 -0.02 1.13 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.04 1.37 6.73 -2.39 -0.02 1.35 16 37 H 0.06 1.73 5.01 -2.39 -0.01 1.71 16 Total: -1.00 -66.28 268.37 -1.69 -67.96 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.51 Total: 14.50 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 2.87 Total: -21.97 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -6.95 Total: -107.43 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.94 kcal Total: -66.28 -1.69 -67.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306704647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.242 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds