Wall clock time and date at job start Mon Mar 30 2020 03:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48496 * 109.47251 * 269.99614 * 3 2 1 5 5 H 1.48499 * 109.47067 * 29.99684 * 3 2 1 6 6 H 1.48502 * 109.47016 * 149.99508 * 3 2 1 7 7 C 1.37886 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99449 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99795 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46803 * 180.02562 * 9 7 2 11 11 C 1.47001 * 110.99880 * 66.37375 * 10 9 7 12 12 C 1.53026 * 109.48171 * 182.94687 * 11 10 9 13 13 N 1.47000 * 109.47826 * 301.85427 * 12 11 10 14 14 C 1.46886 * 110.73965 * 59.17891 * 13 12 11 15 15 H 1.08996 * 109.45610 * 60.33190 * 14 13 12 16 16 C 1.52941 * 109.81523 * 180.47870 * 14 13 12 17 17 C 1.53109 * 109.30793 * 180.25609 * 16 14 13 18 18 C 1.52972 * 109.56866 * 300.09155 * 17 16 14 19 19 C 1.53040 * 109.58488 * 59.74385 * 18 17 16 20 20 C 1.46889 * 111.00383 * 189.99932 * 10 9 7 21 21 H 1.09003 * 109.45914 * 296.57505 * 20 10 9 22 22 H 0.97004 * 120.00407 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47678 * 60.00355 * 9 7 2 24 24 H 1.08997 * 109.47446 * 299.99669 * 9 7 2 25 25 H 1.08999 * 109.47462 * 302.94978 * 11 10 9 26 26 H 1.08996 * 109.47024 * 62.95234 * 11 10 9 27 27 H 1.09003 * 109.47191 * 181.85004 * 12 11 10 28 28 H 1.09004 * 109.47338 * 61.85759 * 12 11 10 29 29 H 1.00902 * 111.00081 * 295.41584 * 13 12 11 30 30 H 1.09001 * 109.49313 * 300.18405 * 16 14 13 31 31 H 1.08997 * 109.49859 * 60.26460 * 16 14 13 32 32 H 1.08996 * 109.44597 * 180.02562 * 17 16 14 33 33 H 1.08997 * 109.45269 * 60.11413 * 17 16 14 34 34 H 1.09006 * 109.45305 * 299.71489 * 18 17 16 35 35 H 1.08993 * 109.45488 * 179.78291 * 18 17 16 36 36 H 1.09005 * 109.49398 * 180.16224 * 19 18 17 37 37 H 1.09002 * 109.50883 * 60.10430 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 3.6587 -3.2587 -1.2566 12 6 4.1191 -4.7166 -1.1906 13 7 5.5677 -4.7626 -0.9453 14 6 5.9039 -4.0850 0.3138 15 1 5.3959 -4.5818 1.1403 16 6 7.4153 -4.1349 0.5420 17 6 7.7519 -3.4315 1.8596 18 6 7.2912 -1.9742 1.7947 19 6 5.7800 -1.9241 1.5582 20 6 5.4498 -2.6252 0.2397 21 1 5.9687 -2.1245 -0.5778 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6804 -0.8888 25 1 2.5795 -3.2249 -1.4058 26 1 4.1562 -2.7581 -2.0873 27 1 3.8946 -5.2117 -2.1354 28 1 3.5971 -5.2261 -0.3806 29 1 6.0782 -4.3629 -1.7184 30 1 7.7417 -5.1738 0.5908 31 1 7.9242 -3.6317 -0.2801 32 1 8.8288 -3.4653 2.0243 33 1 7.2437 -3.9366 2.6809 34 1 7.8035 -1.4676 0.9768 35 1 7.5281 -1.4764 2.7349 36 1 5.4537 -0.8852 1.5093 37 1 5.2665 -2.4284 2.3768 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306704648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:09 Heat of formation + Delta-G solvation = -27.848371 kcal Electronic energy + Delta-G solvation = -16452.649814 eV Core-core repulsion = 14034.903152 eV Total energy + Delta-G solvation = -2417.746662 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07915 -37.17256 -35.99894 -34.42831 -31.14797 -30.99382 -29.64136 -26.32905 -24.29819 -23.73243 -22.18576 -21.23296 -20.83579 -19.05339 -16.99916 -16.69373 -16.36448 -16.06208 -15.63543 -15.49320 -14.76966 -14.55953 -14.23046 -14.15886 -14.09868 -13.44962 -12.92426 -12.89589 -12.72590 -12.40017 -12.25710 -12.14161 -12.03381 -11.83544 -11.56787 -11.43168 -11.20001 -11.04442 -10.82127 -9.41793 -9.04819 -8.33885 -6.36943 1.27620 1.29490 1.40398 2.28226 2.96422 3.04168 3.23579 3.75993 3.94765 4.10284 4.15395 4.22863 4.24407 4.32675 4.44887 4.50075 4.56487 4.61946 4.68622 4.87463 4.91690 4.99902 5.02468 5.08713 5.14857 5.23228 5.26502 5.28973 5.38101 5.49110 5.55502 5.91899 5.98669 6.31826 6.46007 6.60852 6.68709 7.26312 8.82773 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.009091 C = 0.007475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.486760 B = 3079.082617 C = 3744.974185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.517 4.517 8 H 0.037 0.963 9 C 0.172 3.828 10 N -0.537 5.537 11 C 0.029 3.971 12 C 0.070 3.930 13 N -0.674 5.674 14 C 0.100 3.900 15 H 0.071 0.929 16 C -0.101 4.101 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.114 4.114 20 C 0.053 3.947 21 H 0.023 0.977 22 H 0.268 0.732 23 H 0.037 0.963 24 H -0.026 1.026 25 H 0.057 0.943 26 H 0.018 0.982 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.341 0.659 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.657 -6.051 0.656 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.175 1.175 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.045 3.955 10 N -0.261 5.261 11 C -0.101 4.101 12 C -0.060 4.060 13 N -0.302 5.302 14 C -0.011 4.011 15 H 0.089 0.911 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.057 4.057 21 H 0.041 0.959 22 H 0.077 0.923 23 H 0.055 0.945 24 H -0.008 1.008 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.159 0.841 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.252 -6.859 1.313 18.612 hybrid contribution -0.531 2.425 -1.046 2.694 sum 16.721 -4.433 0.267 17.301 Atomic orbital electron populations 1.70038 1.08011 1.28149 1.52411 1.25823 0.95614 1.03007 0.94351 0.85750 0.79475 0.78887 0.79063 1.19441 1.20220 1.17535 1.21243 0.91016 0.93236 1.50003 0.94482 1.19973 0.94209 0.86667 0.94663 1.62044 1.12909 1.16910 1.34261 1.22702 1.01025 0.96729 0.89637 1.22031 0.88458 0.92804 1.02703 1.60948 1.06141 1.57982 1.05108 1.21631 0.97143 0.89504 0.92790 0.91059 1.21513 0.92269 1.01891 0.98280 1.21514 1.01956 0.94398 0.97121 1.21524 0.93159 0.98000 1.02273 1.21617 0.97733 0.99353 0.96490 1.22447 0.87516 0.98613 0.97166 0.95946 0.92333 0.94536 1.00841 0.92421 0.96379 0.88407 0.91337 0.84124 0.89869 0.91597 0.89457 0.91814 0.91890 0.90598 0.93705 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 2 C 0.01 0.57 5.47 84.66 0.46 1.03 16 3 Si 0.94 45.00 27.47 68.60 1.88 46.88 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 7 C -0.52 -30.74 9.03 25.60 0.23 -30.51 16 8 H 0.04 2.46 7.39 -2.91 -0.02 2.43 16 9 C 0.17 8.57 3.56 85.55 0.30 8.87 16 10 N -0.54 -23.03 4.53 -875.25 -3.97 -26.99 16 11 C 0.03 1.14 5.41 86.29 0.47 1.61 16 12 C 0.07 2.15 6.72 86.29 0.58 2.73 16 13 N -0.67 -18.12 6.58 -491.33 -3.23 -21.36 16 14 C 0.10 2.78 2.43 44.92 0.11 2.89 16 15 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 16 C -0.10 -2.06 5.49 30.61 0.17 -1.90 16 17 C -0.11 -2.08 5.92 30.62 0.18 -1.90 16 18 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 19 C -0.11 -3.58 4.92 30.59 0.15 -3.43 16 20 C 0.05 1.78 1.79 44.92 0.08 1.86 16 21 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 23 H 0.04 1.82 4.81 -2.39 -0.01 1.81 16 24 H -0.03 -1.31 7.55 -2.39 -0.02 -1.33 16 25 H 0.06 2.65 6.81 -2.39 -0.02 2.63 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.34 8.27 8.80 -89.69 -0.79 7.48 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.59 6.17 -2.38 -0.01 1.58 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -66.61 277.49 -1.91 -68.52 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.19 Total: 13.66 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 2.92 Total: -21.05 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -6.90 Total: -108.01 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -66.61 -1.91 -68.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306704648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.671 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds