Wall clock time and date at job start Mon Mar 30 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.11872 * 2 1 4 4 C 1.54467 * 110.09217 * 238.43049 * 2 1 3 5 5 C 1.55116 * 104.30097 * 217.38303 * 4 2 1 6 6 C 1.55052 * 102.77609 * 37.33770 * 5 4 2 7 7 C 1.53127 * 110.08361 * 121.55842 * 2 1 3 8 8 C 1.54168 * 110.51027 * 359.10585 * 7 2 1 9 9 C 1.55435 * 100.84562 * 203.63976 * 8 7 2 10 10 C 1.54454 * 102.32981 * 33.33464 * 9 8 7 11 11 C 1.52998 * 109.83300 * 98.15860 * 10 9 8 12 12 C 1.50701 * 109.83287 * 219.14264 * 10 9 8 13 13 H 1.07996 * 120.00098 * 359.56364 * 12 10 9 14 14 C 1.37876 * 120.00058 * 179.55511 * 12 10 9 15 15 N 1.31520 * 119.99511 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00280 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.46976 * 90.00534 * 16 14 12 18 18 H 1.48500 * 109.46961 * 210.00358 * 16 14 12 19 19 H 1.48502 * 109.46956 * 330.00073 * 16 14 12 20 20 O 1.42761 * 111.38381 * 241.34301 * 7 2 1 21 21 H 1.08993 * 109.47553 * 304.88035 * 1 2 3 22 22 H 1.08999 * 109.46747 * 64.88205 * 1 2 3 23 23 H 1.09007 * 109.46975 * 184.87473 * 1 2 3 24 24 H 1.09001 * 110.48414 * 335.96783 * 4 2 1 25 25 H 1.09000 * 110.48416 * 98.47033 * 4 2 1 26 26 H 1.09001 * 110.67545 * 279.06107 * 5 4 2 27 27 H 1.09001 * 110.85951 * 155.69645 * 5 4 2 28 28 H 1.09003 * 110.52016 * 204.18869 * 6 5 4 29 29 H 1.08997 * 110.52581 * 81.58890 * 6 5 4 30 30 H 1.09006 * 111.14149 * 321.53765 * 8 7 2 31 31 H 1.08999 * 111.14459 * 85.74170 * 8 7 2 32 32 H 1.09005 * 110.83720 * 275.12470 * 9 8 7 33 33 H 1.09008 * 111.00636 * 151.62315 * 9 8 7 34 34 H 1.09004 * 109.47374 * 300.44000 * 11 10 9 35 35 H 1.09000 * 109.47731 * 60.44289 * 11 10 9 36 36 H 1.09005 * 109.47192 * 180.44255 * 11 10 9 37 37 H 0.97009 * 119.99587 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9049 1.0235 0.0000 4 6 2.0606 -0.7595 -1.2360 5 6 3.3139 -1.5106 -0.7152 6 6 2.8894 -1.9360 0.7141 7 6 2.0558 -0.7527 1.2255 8 6 0.8853 -1.2585 2.0920 9 6 1.5822 -1.3935 3.4748 10 6 2.6076 -0.2390 3.4415 11 6 2.0494 0.9730 4.1900 12 6 3.8995 -0.6841 4.0771 13 1 3.9892 -1.6841 4.4749 14 6 4.9671 0.1853 4.1506 15 7 4.8578 1.4032 3.6664 16 14 6.5687 -0.3666 4.9378 17 1 7.4482 -0.9664 3.9025 18 1 7.2494 0.8037 5.5480 19 1 6.2817 -1.3758 5.9888 20 8 2.8333 0.1000 2.0660 21 1 -0.3634 0.5876 0.8430 22 1 -0.3633 0.4362 -0.9305 23 1 -0.3633 -1.0240 0.0873 24 1 1.3159 -1.4690 -1.5964 25 1 2.3329 -0.0595 -2.0259 26 1 4.1753 -0.8435 -0.6796 27 1 3.5264 -2.3845 -1.3310 28 1 3.7661 -2.0864 1.3442 29 1 2.2850 -2.8424 0.6794 30 1 0.0781 -0.5268 2.1282 31 1 0.5228 -2.2237 1.7385 32 1 2.0853 -2.3564 3.5631 33 1 0.8686 -1.2549 4.2872 34 1 1.1202 1.2944 3.7194 35 1 1.8560 0.7017 5.2279 36 1 2.7741 1.7865 4.1561 37 1 5.6088 2.0151 3.7184 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306715433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:13 Heat of formation + Delta-G solvation = -60.159869 kcal Electronic energy + Delta-G solvation = -16938.059129 eV Core-core repulsion = 14486.618584 eV Total energy + Delta-G solvation = -2451.440545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.55645 -35.97489 -32.53742 -31.35790 -30.61887 -29.32959 -25.86538 -25.21304 -24.13567 -22.22555 -20.33789 -19.18223 -18.03973 -16.38393 -15.43783 -14.77158 -14.46245 -14.32869 -13.39953 -13.22070 -12.86666 -12.50330 -12.11977 -11.85708 -11.55217 -11.29140 -11.13734 -10.86396 -10.83567 -10.51879 -10.39759 -10.34075 -10.27406 -10.18656 -10.04443 -9.86886 -9.57347 -9.20897 -8.96196 -8.40927 -7.72016 -5.87927 -4.03623 3.33452 3.40272 3.42661 4.47289 4.87106 5.13670 5.20010 5.38108 5.61649 5.65883 5.73877 5.85546 5.91371 5.95346 5.99555 6.15217 6.22743 6.27330 6.34607 6.50308 6.50704 6.52123 6.60500 6.71073 6.78413 6.84245 6.90601 6.96403 7.00480 7.14235 7.22840 7.53864 7.86076 8.17591 8.45682 8.77032 9.17656 9.67188 11.13842 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.032906 B = 0.010430 C = 0.009338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.704492 B = 2684.005473 C = 2997.744937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.132 4.132 7 C 0.110 3.890 8 C -0.151 4.151 9 C -0.142 4.142 10 C 0.229 3.771 11 C -0.138 4.138 12 C -0.531 4.531 13 H 0.056 0.944 14 C 0.081 3.919 15 N -0.860 5.860 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 O -0.338 6.338 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.010 0.990 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 -3.891 -6.288 9.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.158 4.158 6 C -0.169 4.169 7 C 0.069 3.931 8 C -0.188 4.188 9 C -0.180 4.180 10 C 0.192 3.808 11 C -0.196 4.196 12 C -0.568 4.568 13 H 0.074 0.926 14 C -0.124 4.124 15 N -0.497 5.497 16 Si 0.712 3.288 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 O -0.258 6.258 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.456 -3.543 -6.364 9.734 hybrid contribution 0.813 -0.486 0.517 1.080 sum -5.643 -4.030 -5.847 9.071 Atomic orbital electron populations 1.21939 0.95647 1.01306 1.00694 1.21743 0.94728 1.00573 0.94119 0.90215 1.22448 0.97408 0.98514 0.96992 1.22478 0.97803 0.99130 0.96405 1.22704 1.00837 0.97170 0.96225 1.22016 0.89840 0.90211 0.91053 1.23402 0.98350 1.00230 0.96837 1.23252 0.98304 1.01012 0.95427 1.19653 0.92027 0.89159 0.79989 1.21967 0.98379 1.01991 0.97239 1.21265 0.97632 0.98953 1.38994 0.92569 1.24981 0.98302 0.94791 0.94285 1.69967 1.30596 1.05325 1.43820 0.86749 0.84264 0.78260 0.79564 1.20664 1.21241 1.19968 1.88667 1.64748 1.55443 1.16893 0.92513 0.93569 0.92732 0.92309 0.92404 0.91374 0.92692 0.90187 0.92674 0.91022 0.92166 0.92052 0.92589 0.97080 0.94746 0.89310 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.73 37.16 0.29 -1.73 16 2 C -0.09 -1.63 3.34 -89.78 -0.30 -1.93 16 3 H 0.08 1.55 7.99 -51.93 -0.42 1.14 16 4 C -0.12 -1.77 6.38 -24.84 -0.16 -1.92 16 5 C -0.12 -2.02 6.93 -24.53 -0.17 -2.19 16 6 C -0.13 -2.51 5.98 -25.38 -0.15 -2.66 16 7 C 0.11 2.23 1.07 -89.68 -0.10 2.13 16 8 C -0.15 -2.79 4.59 -24.83 -0.11 -2.91 16 9 C -0.14 -3.02 5.93 -24.68 -0.15 -3.17 16 10 C 0.23 5.78 0.83 -91.01 -0.08 5.71 16 11 C -0.14 -3.43 8.51 37.16 0.32 -3.12 16 12 C -0.53 -14.71 8.22 -34.44 -0.28 -14.99 16 13 H 0.06 1.54 7.52 -52.49 -0.39 1.15 16 14 C 0.08 2.28 5.26 -17.82 -0.09 2.18 16 15 N -0.86 -25.00 10.94 55.43 0.61 -24.39 16 16 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 O -0.34 -8.68 9.48 -35.23 -0.33 -9.01 16 21 H 0.06 0.85 6.87 -51.93 -0.36 0.49 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.74 7.11 -51.93 -0.37 0.37 16 24 H 0.06 0.79 7.86 -51.93 -0.41 0.39 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.76 8.07 -51.93 -0.42 1.34 16 29 H 0.05 0.94 7.53 -51.93 -0.39 0.54 16 30 H 0.07 1.27 5.74 -51.93 -0.30 0.97 16 31 H 0.06 0.99 7.50 -51.93 -0.39 0.60 16 32 H 0.06 1.31 7.66 -51.93 -0.40 0.91 16 33 H 0.06 1.11 7.83 -51.92 -0.41 0.70 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 280.94 15.07 4.23 4.23 Total: -1.00 -29.18 280.94 -7.73 -36.91 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.23 Total: 0.42 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -0.99 Total: -24.60 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.61 Total: -24.39 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.33 Total: -9.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.18 -7.73 -36.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306715433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.245 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds