Wall clock time and date at job start Mon Mar 30 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.11872 * 2 1 4 4 C 1.54467 * 110.09217 * 238.43049 * 2 1 3 5 5 C 1.55116 * 104.30097 * 217.38303 * 4 2 1 6 6 C 1.55052 * 102.77609 * 37.33770 * 5 4 2 7 7 C 1.53127 * 110.08361 * 121.55842 * 2 1 3 8 8 C 1.54168 * 110.51027 * 359.10585 * 7 2 1 9 9 C 1.55435 * 100.84562 * 203.63976 * 8 7 2 10 10 C 1.54454 * 102.32981 * 33.33464 * 9 8 7 11 11 C 1.52998 * 109.83300 * 98.15860 * 10 9 8 12 12 C 1.50701 * 109.83287 * 219.14264 * 10 9 8 13 13 H 1.07996 * 120.00098 * 359.56364 * 12 10 9 14 14 C 1.37876 * 120.00058 * 179.55511 * 12 10 9 15 15 N 1.31520 * 119.99511 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00280 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.46976 * 90.00534 * 16 14 12 18 18 H 1.48500 * 109.46961 * 210.00358 * 16 14 12 19 19 H 1.48502 * 109.46956 * 330.00073 * 16 14 12 20 20 O 1.42761 * 111.38381 * 241.34301 * 7 2 1 21 21 H 1.08993 * 109.47553 * 304.88035 * 1 2 3 22 22 H 1.08999 * 109.46747 * 64.88205 * 1 2 3 23 23 H 1.09007 * 109.46975 * 184.87473 * 1 2 3 24 24 H 1.09001 * 110.48414 * 335.96783 * 4 2 1 25 25 H 1.09000 * 110.48416 * 98.47033 * 4 2 1 26 26 H 1.09001 * 110.67545 * 279.06107 * 5 4 2 27 27 H 1.09001 * 110.85951 * 155.69645 * 5 4 2 28 28 H 1.09003 * 110.52016 * 204.18869 * 6 5 4 29 29 H 1.08997 * 110.52581 * 81.58890 * 6 5 4 30 30 H 1.09006 * 111.14149 * 321.53765 * 8 7 2 31 31 H 1.08999 * 111.14459 * 85.74170 * 8 7 2 32 32 H 1.09005 * 110.83720 * 275.12470 * 9 8 7 33 33 H 1.09008 * 111.00636 * 151.62315 * 9 8 7 34 34 H 1.09004 * 109.47374 * 300.44000 * 11 10 9 35 35 H 1.09000 * 109.47731 * 60.44289 * 11 10 9 36 36 H 1.09005 * 109.47192 * 180.44255 * 11 10 9 37 37 H 0.97009 * 119.99587 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9049 1.0235 0.0000 4 6 2.0606 -0.7595 -1.2360 5 6 3.3139 -1.5106 -0.7152 6 6 2.8894 -1.9360 0.7141 7 6 2.0558 -0.7527 1.2255 8 6 0.8853 -1.2585 2.0920 9 6 1.5822 -1.3935 3.4748 10 6 2.6076 -0.2390 3.4415 11 6 2.0494 0.9730 4.1900 12 6 3.8995 -0.6841 4.0771 13 1 3.9892 -1.6841 4.4749 14 6 4.9671 0.1853 4.1506 15 7 4.8578 1.4032 3.6664 16 14 6.5687 -0.3666 4.9378 17 1 7.4482 -0.9664 3.9025 18 1 7.2494 0.8037 5.5480 19 1 6.2817 -1.3758 5.9888 20 8 2.8333 0.1000 2.0660 21 1 -0.3634 0.5876 0.8430 22 1 -0.3633 0.4362 -0.9305 23 1 -0.3633 -1.0240 0.0873 24 1 1.3159 -1.4690 -1.5964 25 1 2.3329 -0.0595 -2.0259 26 1 4.1753 -0.8435 -0.6796 27 1 3.5264 -2.3845 -1.3310 28 1 3.7661 -2.0864 1.3442 29 1 2.2850 -2.8424 0.6794 30 1 0.0781 -0.5268 2.1282 31 1 0.5228 -2.2237 1.7385 32 1 2.0853 -2.3564 3.5631 33 1 0.8686 -1.2549 4.2872 34 1 1.1202 1.2944 3.7194 35 1 1.8560 0.7017 5.2279 36 1 2.7741 1.7865 4.1561 37 1 5.6088 2.0151 3.7184 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306715433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:12 Heat of formation + Delta-G solvation = -76.472321 kcal Electronic energy + Delta-G solvation = -16938.766490 eV Core-core repulsion = 14486.618584 eV Total energy + Delta-G solvation = -2452.147906 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13899 -37.58640 -34.55768 -32.93955 -32.13762 -31.05931 -27.42918 -27.28638 -25.50246 -23.84619 -21.77556 -20.98324 -19.56409 -18.40303 -16.93707 -16.62909 -16.12750 -15.85064 -15.16581 -14.64356 -14.24563 -14.12942 -13.94912 -13.44902 -13.17381 -13.00387 -12.79445 -12.72724 -12.53046 -12.19818 -12.09572 -11.94240 -11.81176 -11.74879 -11.48069 -11.41396 -11.09135 -10.86320 -10.81176 -10.53153 -9.58276 -7.99671 -6.21976 1.38307 1.39419 1.48678 2.43163 3.12621 3.51953 3.79801 3.81161 4.12826 4.27512 4.29708 4.40365 4.55181 4.62770 4.71278 4.76113 4.84116 4.92123 4.97278 4.98969 5.03090 5.07391 5.12108 5.17918 5.23725 5.27312 5.30843 5.38173 5.47034 5.59233 5.61681 5.69418 5.77604 6.15533 6.38761 6.74023 7.28689 7.54904 9.00599 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.032906 B = 0.010430 C = 0.009338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.704492 B = 2684.005473 C = 2997.744937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 H 0.048 0.952 4 C -0.106 4.106 5 C -0.120 4.120 6 C -0.131 4.131 7 C 0.091 3.909 8 C -0.137 4.137 9 C -0.140 4.140 10 C 0.215 3.785 11 C -0.131 4.131 12 C -0.547 4.547 13 H 0.049 0.951 14 C 0.032 3.968 15 N -0.890 5.890 16 Si 0.943 3.057 17 H -0.281 1.281 18 H -0.282 1.282 19 H -0.267 1.267 20 O -0.376 6.376 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.217 -5.356 -7.457 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 H 0.066 0.934 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.169 4.169 7 C 0.051 3.949 8 C -0.175 4.175 9 C -0.177 4.177 10 C 0.178 3.822 11 C -0.189 4.189 12 C -0.585 4.585 13 H 0.068 0.932 14 C -0.170 4.170 15 N -0.528 5.528 16 Si 0.769 3.231 17 H -0.207 1.207 18 H -0.208 1.208 19 H -0.191 1.191 20 O -0.296 6.296 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.995 -5.019 -7.532 12.077 hybrid contribution 1.292 -0.035 0.867 1.556 sum -6.704 -5.054 -6.665 10.720 Atomic orbital electron populations 1.21893 0.92941 1.02520 1.01625 1.21759 0.96968 0.98707 0.93941 0.93375 1.22431 0.96972 0.98853 0.96076 1.22472 0.97700 0.99904 0.95653 1.22674 0.99489 0.97973 0.96785 1.22455 0.90274 0.90479 0.91723 1.23389 0.97674 1.02040 0.94358 1.23151 0.97767 0.98978 0.97839 1.19715 0.92083 0.90390 0.80037 1.21851 0.98117 1.01119 0.97800 1.21644 0.99226 0.98593 1.39011 0.93236 1.25697 1.01390 0.94896 0.94970 1.70120 1.31230 1.06250 1.45183 0.85812 0.80510 0.78009 0.78765 1.20707 1.20776 1.19096 1.88592 1.66513 1.57049 1.17441 0.93383 0.91302 0.90924 0.89260 0.91250 0.94229 0.89832 0.94365 0.90011 0.89880 0.89081 0.92699 0.91326 0.95480 0.94266 0.92528 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 7.73 71.98 0.56 -2.84 16 2 C -0.09 -3.16 3.34 -10.25 -0.03 -3.19 16 3 H 0.05 1.88 7.99 -2.39 -0.02 1.86 16 4 C -0.11 -2.89 6.38 31.82 0.20 -2.69 16 5 C -0.12 -3.82 6.93 32.02 0.22 -3.59 16 6 C -0.13 -4.87 5.98 31.47 0.19 -4.68 16 7 C 0.09 3.59 1.07 -10.18 -0.01 3.58 16 8 C -0.14 -4.73 4.59 31.83 0.15 -4.59 16 9 C -0.14 -5.79 5.93 31.93 0.19 -5.60 16 10 C 0.22 11.01 0.83 -11.05 -0.01 11.00 16 11 C -0.13 -6.62 8.51 71.98 0.61 -6.01 16 12 C -0.55 -31.01 8.22 25.60 0.21 -30.80 16 13 H 0.05 2.78 7.52 -2.91 -0.02 2.76 16 14 C 0.03 1.85 5.26 84.65 0.45 2.29 16 15 N -0.89 -53.51 10.94 21.45 0.23 -53.28 16 16 Si 0.94 45.02 29.54 68.60 2.03 47.05 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 O -0.38 -19.71 9.48 -148.98 -1.41 -21.12 16 21 H 0.05 1.31 6.87 -2.39 -0.02 1.29 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.07 1.61 7.11 -2.38 -0.02 1.59 16 24 H 0.09 1.94 7.86 -2.39 -0.02 1.92 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 29 H 0.08 2.54 7.53 -2.39 -0.02 2.52 16 30 H 0.08 2.68 5.74 -2.38 -0.01 2.66 16 31 H 0.09 2.58 7.50 -2.39 -0.02 2.56 16 32 H 0.05 2.30 7.66 -2.38 -0.02 2.28 16 33 H 0.07 2.62 7.83 -2.38 -0.02 2.60 16 34 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 3.22 6.06 -2.38 -0.01 3.20 16 37 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -65.00 280.94 4.59 -60.41 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.02 Total: 14.05 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 2.72 Total: -47.11 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.23 Total: -53.28 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.41 Total: -21.12 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.00 4.59 -60.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306715433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.059 kcal (2) G-P(sol) polarization free energy of solvation -65.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds