Wall clock time and date at job start Mon Mar 30 2020 03:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46844 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.50232 * 111.15488 * 182.96437 * 11 10 9 13 13 H 1.09538 * 111.89648 * 37.67283 * 12 11 10 14 14 C 1.54554 * 106.68367 * 274.69670 * 12 11 10 15 15 C 1.54318 * 104.28225 * 331.06811 * 14 12 11 16 16 C 1.49481 * 110.38160 * 69.87468 * 11 10 9 17 17 H 1.10382 * 104.68464 * 339.00118 * 16 11 10 18 18 C 1.52686 * 109.17660 * 226.57417 * 16 11 10 19 19 N 1.51437 * 110.68383 * 303.89698 * 18 16 11 20 20 C 1.44473 * 113.88357 * 329.69353 * 19 18 16 21 21 C 1.50587 * 106.46156 * 160.33133 * 12 11 10 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 1.09260 * 110.76567 * 90.07898 * 14 12 11 28 28 H 1.09266 * 110.68763 * 212.11495 * 14 12 11 29 29 H 1.08476 * 111.97386 * 250.14057 * 15 14 12 30 30 H 1.10235 * 108.96471 * 130.86886 * 15 14 12 31 31 H 1.08855 * 109.36592 * 63.76686 * 18 16 11 32 32 H 1.08845 * 109.36318 * 184.03490 * 18 16 11 33 33 H 1.00877 * 110.21793 * 95.64975 * 19 18 16 34 34 H 1.10201 * 107.38202 * 203.90546 * 20 19 18 35 35 H 1.07275 * 112.03858 * 321.62146 * 20 19 18 36 36 H 1.09062 * 108.66160 * 300.75490 * 21 12 11 37 37 H 1.09133 * 108.55459 * 183.30891 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5110 -4.9338 -0.0012 12 6 2.4516 -6.1030 0.0713 13 1 3.3055 -5.9003 0.7267 14 6 2.8903 -6.4100 -1.3785 15 6 1.6957 -5.9540 -2.2424 16 6 0.8336 -5.1432 -1.3171 17 1 0.7595 -4.1337 -1.7575 18 6 -0.6074 -5.5861 -1.0746 19 7 -0.6468 -6.8278 -0.2086 20 6 0.5027 -7.6884 -0.3675 21 6 1.6382 -7.2759 0.5513 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 3.7899 -5.8470 -1.6384 28 1 3.0725 -7.4795 -1.5084 29 1 1.1698 -6.7940 -2.6835 30 1 2.0685 -5.3193 -3.0629 31 1 -1.1500 -4.7887 -0.5698 32 1 -1.0820 -5.8084 -2.0286 33 1 -0.7848 -6.5744 0.7580 34 1 0.1977 -8.7038 -0.0669 35 1 0.8288 -7.7401 -1.3882 36 1 1.2154 -7.0316 1.5265 37 1 2.3029 -8.1328 0.6732 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306826439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:44 Heat of formation + Delta-G solvation = 6.184895 kcal Electronic energy + Delta-G solvation = -16404.759639 eV Core-core repulsion = 13988.488770 eV Total energy + Delta-G solvation = -2416.270869 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26143 -34.99824 -33.43784 -32.41083 -31.47410 -28.69759 -26.43483 -25.97749 -23.90520 -21.54950 -20.85645 -19.70815 -18.85097 -16.59397 -16.12757 -15.08049 -14.90180 -14.64877 -14.44515 -13.62698 -13.25700 -13.01371 -12.75447 -12.40128 -12.11989 -11.84617 -11.39566 -11.21598 -11.11608 -10.91575 -10.83469 -10.57861 -10.45970 -10.40691 -9.98118 -9.81682 -9.30504 -9.14643 -8.37025 -8.11327 -7.89628 -6.01323 -4.04025 3.31801 3.36378 3.38562 4.29501 4.47221 4.62966 4.79724 4.94686 5.06311 5.23325 5.31658 5.34352 5.52331 5.66616 5.75022 5.82731 5.90613 5.99814 6.01027 6.07802 6.13695 6.19446 6.29248 6.34552 6.46886 6.51146 6.57631 6.92755 7.32943 7.36131 7.46163 7.74037 7.78299 7.85352 8.05575 8.41097 9.02675 9.59659 11.09867 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.044423 B = 0.006936 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.147558 B = 4035.842201 C = 4268.034727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.032 3.968 10 C 0.048 3.952 11 N -0.487 5.487 12 C 0.053 3.947 13 H 0.083 0.917 14 C -0.143 4.143 15 C -0.123 4.123 16 C 0.016 3.984 17 H 0.074 0.926 18 C 0.085 3.915 19 N -0.690 5.690 20 C 0.065 3.935 21 C -0.138 4.138 22 H 0.261 0.739 23 H 0.023 0.977 24 H 0.016 0.984 25 H 0.021 0.979 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.343 0.657 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -13.944 -2.249 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.080 4.080 11 N -0.210 5.210 12 C -0.055 4.055 13 H 0.101 0.899 14 C -0.182 4.182 15 C -0.162 4.162 16 C -0.094 4.094 17 H 0.092 0.908 18 C -0.044 4.044 19 N -0.319 5.319 20 C -0.065 4.065 21 C -0.177 4.177 22 H 0.071 0.929 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.743 -14.121 -2.211 14.399 hybrid contribution 1.919 1.605 -0.210 2.511 sum 3.662 -12.516 -2.420 13.263 Atomic orbital electron populations 1.69959 1.05997 1.26716 1.50439 1.24988 0.94836 0.99145 0.95247 0.86661 0.79594 0.83172 0.78580 1.21213 1.20234 1.20322 1.21150 0.92910 0.91099 1.51151 0.92936 1.19060 0.93842 0.90071 0.97572 1.22524 0.97148 0.89350 0.98937 1.66856 1.23694 1.01738 1.28683 1.22815 0.94896 0.92502 0.95328 0.89881 1.22955 0.98111 1.01090 0.96035 1.21883 0.96390 0.99983 0.97911 1.22716 0.95407 1.00957 0.90319 0.90773 1.22574 0.93496 0.91076 0.97217 1.60781 1.39190 1.18856 1.13066 1.21206 0.89149 0.95925 1.00229 1.21658 0.98645 0.96822 1.00598 0.92911 0.95885 0.96568 0.96055 0.92192 0.92026 0.91310 0.90791 0.92179 0.90453 0.91609 0.83993 0.92885 0.90373 0.91779 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.83 4.98 -27.89 -0.14 0.69 16 10 C 0.05 1.02 4.54 -3.85 -0.02 1.00 16 11 N -0.49 -8.73 4.78 -215.38 -1.03 -9.76 16 12 C 0.05 0.79 3.49 -66.23 -0.23 0.55 16 13 H 0.08 1.22 8.05 -51.62 -0.42 0.81 16 14 C -0.14 -1.88 5.80 -25.22 -0.15 -2.03 16 15 C -0.12 -1.72 5.53 -27.42 -0.15 -1.87 16 16 C 0.02 0.27 1.89 -67.81 -0.13 0.14 16 17 H 0.07 1.46 5.71 -51.14 -0.29 1.17 16 18 C 0.08 1.33 6.82 -1.41 -0.01 1.32 16 19 N -0.69 -9.83 6.82 -113.13 -0.77 -10.60 16 20 C 0.07 0.83 5.60 -5.74 -0.03 0.80 16 21 C -0.14 -1.77 4.74 -28.55 -0.14 -1.90 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.65 8.14 -51.92 -0.42 0.23 16 24 H 0.02 0.44 6.46 -51.93 -0.34 0.11 16 25 H 0.02 0.45 7.96 -51.93 -0.41 0.04 16 26 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 27 H 0.06 0.83 8.16 -51.78 -0.42 0.41 16 28 H 0.07 0.77 7.78 -51.78 -0.40 0.37 16 29 H 0.07 0.92 6.39 -52.22 -0.33 0.59 16 30 H 0.06 0.85 8.24 -51.22 -0.42 0.42 16 31 H 0.08 1.34 8.13 -52.01 -0.42 0.92 16 32 H 0.07 0.95 8.13 -52.02 -0.42 0.53 16 33 H 0.34 4.98 8.37 -39.30 -0.33 4.65 16 34 H 0.05 0.62 8.23 -51.24 -0.42 0.20 16 35 H 0.08 0.98 4.30 -52.88 -0.23 0.75 16 36 H 0.06 0.88 7.77 -51.89 -0.40 0.48 16 37 H 0.05 0.60 8.15 -51.85 -0.42 0.18 16 LS Contribution 277.85 15.07 4.19 4.19 Total: -1.00 -29.26 277.85 -9.37 -38.63 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.07 Total: 1.88 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.40 Total: -14.94 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -1.06 Total: -46.49 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.26 -9.37 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306826439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.819 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds