Wall clock time and date at job start Mon Mar 30 2020 03:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99938 * 2 1 4 4 H 1.48499 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47016 * 299.99792 * 3 2 1 6 6 H 1.48501 * 109.47200 * 59.99726 * 3 2 1 7 7 C 1.37877 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99808 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99590 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46715 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99953 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.25248 * 35.52126 * 11 10 9 13 13 C 1.51792 * 109.22387 * 276.05891 * 11 10 9 14 14 C 1.50799 * 113.11798 * 187.06449 * 13 11 10 15 15 C 1.49881 * 116.04571 * 42.87787 * 14 13 11 16 16 H 1.09003 * 108.76771 * 197.12318 * 15 14 13 17 17 C 1.53787 * 112.61032 * 77.23973 * 15 14 13 18 18 N 1.47910 * 106.55065 * 211.64181 * 17 15 14 19 19 C 1.48096 * 108.27216 * 358.88565 * 18 17 15 20 20 C 1.53834 * 114.72063 * 319.04370 * 15 14 13 21 21 H 1.09001 * 113.12321 * 281.47027 * 20 15 14 22 22 C 1.52277 * 109.25688 * 154.99682 * 11 10 9 23 23 H 0.97004 * 119.99962 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47549 * 59.99582 * 9 7 2 25 25 H 1.08998 * 109.47121 * 299.98967 * 9 7 2 26 26 H 1.00895 * 111.00379 * 56.04025 * 10 9 7 27 27 H 1.08998 * 108.75940 * 308.00475 * 13 11 10 28 28 H 1.09003 * 108.75728 * 66.12939 * 13 11 10 29 29 H 1.09001 * 108.16295 * 164.58102 * 14 13 11 30 30 H 1.08999 * 108.16471 * 281.37415 * 14 13 11 31 31 H 1.09001 * 110.04107 * 92.36985 * 17 15 14 32 32 H 1.08998 * 110.03910 * 330.91585 * 17 15 14 33 33 H 1.00901 * 110.99951 * 236.81428 * 18 17 15 34 34 H 1.08996 * 110.46176 * 144.08637 * 19 18 17 35 35 H 1.08993 * 110.46523 * 266.67590 * 19 18 17 36 36 H 1.08994 * 109.36338 * 61.39771 * 22 11 10 37 37 H 1.09002 * 109.35741 * 301.79700 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5053 -4.9070 0.0024 12 1 0.5980 -4.8241 -0.5959 13 6 1.1335 -5.2732 1.4278 14 6 0.5602 -6.6625 1.5519 15 6 1.2549 -7.7336 0.7666 16 1 0.5936 -8.5966 0.6895 17 6 2.5671 -8.1923 1.4245 18 7 3.4759 -8.5825 0.3248 19 6 2.7568 -8.4033 -0.9575 20 6 1.6866 -7.3156 -0.6495 21 1 0.8653 -7.3200 -1.3662 22 6 2.4115 -5.9700 -0.6040 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8399 -3.5483 0.7835 27 1 2.0250 -5.2051 2.0512 28 1 0.3978 -4.5567 1.7932 29 1 0.5802 -6.9455 2.6043 30 1 -0.4808 -6.6304 1.2305 31 1 2.3800 -9.0464 2.0754 32 1 3.0036 -7.3741 1.9974 33 1 3.7876 -9.5358 0.4344 34 1 3.4404 -8.0568 -1.7325 35 1 2.2778 -9.3347 -1.2591 36 1 3.3125 -6.0653 0.0018 37 1 2.6883 -5.6743 -1.6160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306898751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:36 Heat of formation + Delta-G solvation = -14.403941 kcal Electronic energy + Delta-G solvation = -15866.888428 eV Core-core repulsion = 13449.724760 eV Total energy + Delta-G solvation = -2417.163668 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02110 -36.25907 -33.51204 -32.23496 -31.03198 -28.85443 -27.25167 -25.54647 -22.84864 -21.87250 -21.23859 -20.43198 -18.45957 -16.70293 -16.27851 -15.38455 -14.73190 -14.35695 -14.21702 -13.90002 -13.37787 -13.09133 -12.61590 -12.51585 -12.27551 -11.98455 -11.75825 -11.41721 -11.25888 -10.93711 -10.79539 -10.73640 -10.54647 -10.22080 -10.03386 -9.82708 -9.63665 -9.07866 -8.46068 -8.44870 -7.16996 -5.99754 -4.01170 3.33378 3.40482 3.46168 4.19372 4.46018 4.56970 4.71440 4.76727 5.16869 5.28333 5.33411 5.36402 5.43174 5.49755 5.61164 5.64409 5.76198 5.80396 5.99379 6.03430 6.14948 6.15317 6.24337 6.43097 6.44826 6.54218 6.76767 6.84576 6.88325 7.29577 7.34187 7.50468 7.84664 8.18841 8.48324 8.70191 9.09238 9.63772 11.11389 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.054825 B = 0.005520 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.594784 B = 5071.131145 C = 5246.553770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.090 3.910 12 H 0.064 0.936 13 C -0.142 4.142 14 C -0.097 4.097 15 C -0.098 4.098 16 H 0.060 0.940 17 C 0.051 3.949 18 N -0.681 5.681 19 C 0.047 3.953 20 C -0.090 4.090 21 H 0.085 0.915 22 C -0.093 4.093 23 H 0.260 0.740 24 H 0.026 0.974 25 H -0.014 1.014 26 H 0.328 0.672 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.333 0.667 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 -17.218 1.684 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.314 5.314 11 C -0.021 4.021 12 H 0.083 0.917 13 C -0.181 4.181 14 C -0.136 4.136 15 C -0.117 4.117 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.310 5.310 19 C -0.082 4.082 20 C -0.109 4.109 21 H 0.103 0.897 22 C -0.131 4.131 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.004 0.996 26 H 0.145 0.855 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.148 0.852 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.628 -16.444 0.972 16.681 hybrid contribution -0.725 0.105 1.017 1.253 sum 1.903 -16.339 1.989 16.569 Atomic orbital electron populations 1.69977 1.06085 1.26582 1.51253 1.24992 0.94859 0.99348 0.95431 0.86445 0.80117 0.83412 0.77455 1.19641 1.21023 1.21146 1.21264 0.93575 0.90347 1.49879 0.91951 1.19571 0.90661 0.87463 0.95582 1.60782 1.20749 1.01044 1.48799 1.21036 0.96510 0.90851 0.93712 0.91733 1.21561 1.01151 0.95794 0.99600 1.20208 0.99524 0.94543 0.99314 1.21336 0.96545 0.98084 0.95763 0.92175 1.22678 0.91612 0.99889 0.93631 1.62084 1.38542 1.28416 1.01943 1.23124 0.95437 0.97213 0.92462 1.22229 0.97107 0.95964 0.95640 0.89698 1.21313 0.98544 0.91554 1.01717 0.93044 0.95626 0.99628 0.85529 0.92649 0.91860 0.92595 0.92632 0.93595 0.90476 0.85211 0.90126 0.94561 0.91099 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.18 5.23 -4.97 -0.03 5.15 16 10 N -0.69 -15.05 6.21 -109.03 -0.68 -15.73 16 11 C 0.09 1.62 2.50 -68.69 -0.17 1.45 16 12 H 0.06 1.25 7.79 -51.93 -0.40 0.85 16 13 C -0.14 -2.27 5.06 -28.45 -0.14 -2.42 16 14 C -0.10 -1.25 5.13 -29.38 -0.15 -1.41 16 15 C -0.10 -1.15 2.66 -91.32 -0.24 -1.39 16 16 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 17 C 0.05 0.57 6.49 -2.86 -0.02 0.55 16 18 N -0.68 -7.59 6.98 -110.10 -0.77 -8.35 16 19 C 0.05 0.51 6.89 -1.74 -0.01 0.50 16 20 C -0.09 -1.13 3.63 -88.81 -0.32 -1.45 16 21 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 22 C -0.09 -1.44 4.49 -27.15 -0.12 -1.56 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 25 H -0.01 -0.39 7.41 -51.93 -0.38 -0.78 16 26 H 0.33 7.00 8.33 -39.29 -0.33 6.67 16 27 H 0.05 0.88 7.85 -51.93 -0.41 0.47 16 28 H 0.06 1.13 7.47 -51.93 -0.39 0.74 16 29 H 0.06 0.65 8.06 -51.93 -0.42 0.24 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.97 7.83 -51.93 -0.41 0.57 16 33 H 0.33 3.01 8.91 -39.29 -0.35 2.66 16 34 H 0.08 0.91 8.02 -51.93 -0.42 0.49 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 1.15 7.15 -51.93 -0.37 0.78 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 286.03 15.07 4.31 4.31 Total: -1.00 -30.07 286.03 -9.42 -39.49 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.37 Total: 4.00 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -1.63 Total: -14.20 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.71 Total: -50.60 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.07 -9.42 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306898751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.090 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds