Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00070 * 2 1 4 4 C 1.50699 * 120.00084 * 179.72014 * 2 1 3 5 5 H 1.08998 * 110.01641 * 149.45156 * 4 2 1 6 6 C 1.54268 * 110.03487 * 28.05747 * 4 2 1 7 7 C 1.54890 * 104.19878 * 217.10487 * 6 4 2 8 8 C 1.54894 * 102.74488 * 37.94078 * 7 6 4 9 9 H 1.09000 * 110.48704 * 80.73936 * 8 7 6 10 10 O 1.42900 * 110.48438 * 203.24672 * 8 7 6 11 11 C 1.53881 * 110.03370 * 270.83900 * 4 2 1 12 12 C 1.53002 * 110.03012 * 0.02562 * 11 4 2 13 13 C 1.52993 * 110.03253 * 238.56878 * 11 4 2 14 14 C 1.50704 * 109.47428 * 179.97438 * 13 11 4 15 15 H 1.08004 * 119.99280 * 0.02562 * 14 13 11 16 16 C 1.37873 * 120.00436 * 180.02562 * 14 13 11 17 17 N 1.31512 * 119.99948 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99958 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47213 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47575 * 119.99882 * 18 16 14 21 21 H 1.48500 * 109.46858 * 239.99943 * 18 16 14 22 22 H 1.07996 * 120.00522 * 6.67019 * 1 2 3 23 23 H 1.08002 * 119.99964 * 186.67091 * 1 2 3 24 24 H 1.09000 * 109.46800 * 240.09899 * 3 2 1 25 25 H 1.09001 * 109.46982 * 0.09657 * 3 2 1 26 26 H 1.08996 * 109.47391 * 120.09826 * 3 2 1 27 27 H 1.08998 * 110.48201 * 335.78730 * 6 4 2 28 28 H 1.08999 * 110.48549 * 98.29038 * 6 4 2 29 29 H 1.08998 * 110.75830 * 156.25243 * 7 6 4 30 30 H 1.09002 * 110.75358 * 279.44480 * 7 6 4 31 31 H 0.96704 * 114.00069 * 298.55249 * 10 8 7 32 32 H 1.08992 * 109.46997 * 54.30083 * 12 11 4 33 33 H 1.09002 * 109.46794 * 174.30445 * 12 11 4 34 34 H 1.09005 * 109.46806 * 294.29761 * 12 11 4 35 35 H 1.09000 * 109.47968 * 300.00046 * 13 11 4 36 36 H 1.09007 * 109.47389 * 59.99860 * 13 11 4 37 37 H 0.97003 * 120.00263 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0064 5 1 3.0138 -1.1897 -0.5147 6 6 1.2201 -2.4056 -0.6700 7 6 1.5195 -3.6781 0.1608 8 6 1.6040 -3.1300 1.6070 9 1 0.6056 -2.9997 2.0246 10 8 2.3782 -4.0056 2.4292 11 6 2.3087 -1.7651 1.4542 12 6 1.7102 -0.7538 2.4339 13 6 3.8096 -1.9177 1.7085 14 6 4.0353 -2.3677 3.1289 15 1 3.1924 -2.5291 3.7846 16 6 5.3178 -2.5733 3.5915 17 7 6.3441 -2.3773 2.7929 18 14 5.5974 -3.1318 5.3520 19 1 4.2887 -3.2797 6.0382 20 1 6.3064 -4.4365 5.3509 21 1 6.4193 -2.1224 6.0668 22 1 -0.5401 0.9289 -0.1086 23 1 -0.5400 -0.9290 0.1087 24 1 2.6888 1.3636 -0.8909 25 1 1.3551 2.1336 0.0017 26 1 2.6914 1.3621 0.8890 27 1 0.1597 -2.1582 -0.6202 28 1 1.5308 -2.5419 -1.7058 29 1 0.7080 -4.3998 0.0680 30 1 2.4671 -4.1233 -0.1426 31 1 2.0096 -4.8958 2.5119 32 1 0.6584 -0.5959 2.1957 33 1 1.7991 -1.1365 3.4507 34 1 2.2469 0.1916 2.3534 35 1 4.2210 -2.6584 1.0227 36 1 4.3046 -0.9599 1.5482 37 1 7.2464 -2.5223 3.1182 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306937468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = -61.606440 kcal Electronic energy + Delta-G solvation = -16676.326057 eV Core-core repulsion = 14224.822784 eV Total energy + Delta-G solvation = -2451.503273 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95988 -37.05042 -35.17261 -34.12669 -32.82580 -28.80580 -28.41867 -27.78407 -26.00093 -24.26598 -22.09850 -20.11334 -18.47071 -18.09898 -17.83283 -16.51033 -16.40455 -15.88580 -15.10803 -14.70641 -14.35473 -14.19902 -14.17702 -13.76352 -13.46725 -12.98708 -12.85251 -12.64902 -12.60656 -12.48680 -12.37535 -12.12522 -11.80721 -11.65686 -11.27600 -11.19091 -10.76870 -10.59298 -10.40945 -10.30737 -9.60801 -8.00412 -5.97921 1.40536 1.41101 1.47415 1.54197 2.52437 3.28496 3.62781 3.77466 3.84327 4.02957 4.26475 4.38820 4.54261 4.58657 4.67768 4.72878 4.76416 4.82447 4.85706 4.88086 5.04310 5.13883 5.16011 5.22966 5.28515 5.33934 5.49740 5.53829 5.58552 5.69908 5.83942 5.93072 6.01543 6.16637 6.51803 7.10599 7.33972 7.62665 9.13253 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.032418 B = 0.009604 C = 0.008560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.498245 B = 2914.808932 C = 3270.232853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.121 4.121 4 C -0.058 4.058 5 H 0.048 0.952 6 C -0.113 4.113 7 C -0.151 4.151 8 C 0.106 3.894 9 H 0.064 0.936 10 O -0.543 6.543 11 C -0.045 4.045 12 C -0.119 4.119 13 C 0.058 3.942 14 C -0.449 4.449 15 H 0.065 0.935 16 C -0.020 4.020 17 N -0.951 5.951 18 Si 0.954 3.046 19 H -0.264 1.264 20 H -0.288 1.288 21 H -0.288 1.288 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.359 0.641 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.041 0.959 35 H -0.023 1.023 36 H -0.027 1.027 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.453 1.638 -5.793 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.111 4.111 3 C -0.178 4.178 4 C -0.077 4.077 5 H 0.067 0.933 6 C -0.150 4.150 7 C -0.188 4.188 8 C 0.047 3.953 9 H 0.081 0.919 10 O -0.347 6.347 11 C -0.046 4.046 12 C -0.176 4.176 13 C 0.021 3.979 14 C -0.487 4.487 15 H 0.083 0.917 16 C -0.213 4.213 17 N -0.596 5.596 18 Si 0.781 3.219 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.215 1.215 22 H 0.130 0.870 23 H 0.128 0.872 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.205 0.795 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.060 0.940 35 H -0.004 1.004 36 H -0.008 1.008 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.916 2.174 -5.727 15.205 hybrid contribution 0.855 -0.847 0.782 1.436 sum -13.061 1.327 -4.945 14.028 Atomic orbital electron populations 1.23828 0.94411 1.02793 1.02603 1.21567 0.95903 0.94536 0.99096 1.20962 1.00415 0.94880 1.01543 1.20926 0.97869 0.93726 0.95184 0.93318 1.22535 1.00896 0.93044 0.98517 1.23141 1.01482 0.98301 0.95916 1.22677 0.92768 0.90270 0.89540 0.91873 1.87377 1.52007 1.24707 1.70605 1.21163 0.96211 0.93626 0.93551 1.21849 0.99846 0.97765 0.98174 1.18814 0.90564 0.92883 0.95590 1.21453 0.91217 1.38821 0.97246 0.91654 1.25841 0.96585 0.97646 1.01247 1.70133 0.98446 1.53801 1.37234 0.85556 0.77948 0.77347 0.81067 1.18802 1.21418 1.21455 0.86982 0.87228 0.92068 0.90141 0.93064 0.88438 0.91180 0.89162 0.93215 0.79506 0.91134 0.94563 0.93977 1.00443 1.00828 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.53 11.74 67.79 0.80 -3.73 16 2 C -0.11 -3.14 3.43 -16.48 -0.06 -3.20 16 3 C -0.12 -3.32 9.93 71.24 0.71 -2.62 16 4 C -0.06 -1.99 2.83 -10.81 -0.03 -2.02 16 5 H 0.05 1.91 7.67 -2.39 -0.02 1.89 16 6 C -0.11 -3.08 6.18 31.67 0.20 -2.89 16 7 C -0.15 -4.51 6.61 31.89 0.21 -4.30 16 8 C 0.11 3.80 3.57 31.71 0.11 3.91 16 9 H 0.06 1.97 7.86 -2.39 -0.02 1.96 16 10 O -0.54 -22.61 9.43 -148.98 -1.40 -24.01 16 11 C -0.05 -1.84 0.66 -51.42 -0.03 -1.88 16 12 C -0.12 -4.55 6.86 71.98 0.49 -4.06 16 13 C 0.06 3.18 3.57 29.85 0.11 3.28 16 14 C -0.45 -25.97 6.31 25.60 0.16 -25.81 16 15 H 0.07 3.72 5.63 -2.91 -0.02 3.70 16 16 C -0.02 -1.19 5.46 84.65 0.46 -0.73 16 17 N -0.95 -61.29 13.29 21.45 0.28 -61.00 16 18 Si 0.95 47.47 29.54 68.60 2.03 49.49 16 19 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 21 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 22 H 0.11 2.09 7.85 -2.91 -0.02 2.06 16 23 H 0.11 2.27 5.90 -2.91 -0.02 2.25 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.08 1.75 7.79 -2.39 -0.02 1.73 16 26 H 0.05 1.63 6.65 -2.39 -0.02 1.61 16 27 H 0.10 2.17 5.26 -2.39 -0.01 2.15 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.36 11.17 9.11 -74.05 -0.67 10.49 16 32 H 0.07 2.20 6.11 -2.39 -0.01 2.19 16 33 H 0.04 1.51 6.73 -2.39 -0.02 1.49 16 34 H 0.04 1.65 6.18 -2.38 -0.01 1.63 16 35 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 36 H -0.03 -1.60 8.14 -2.38 -0.02 -1.62 16 37 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -70.61 280.63 4.41 -66.20 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.37 Total: 13.35 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 3.13 Total: -44.03 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.28 Total: -61.00 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -1.40 Total: -24.01 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.49 kcal Total: -70.61 4.41 -66.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.595 kcal (2) G-P(sol) polarization free energy of solvation -70.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds