Wall clock time and date at job start Mon Mar 30 2020 03:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99829 * 2 1 4 4 H 1.48506 * 109.46864 * 269.99997 * 3 2 1 5 5 H 1.48497 * 109.47097 * 29.99671 * 3 2 1 6 6 H 1.48499 * 109.47386 * 150.00132 * 3 2 1 7 7 C 1.37880 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99573 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00189 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.47314 * 111.00313 * 179.97438 * 10 9 7 12 12 H 1.10077 * 107.68236 * 327.01282 * 11 10 9 13 13 C 1.52171 * 109.55960 * 85.00288 * 11 10 9 14 14 C 1.52157 * 112.99862 * 78.52721 * 13 11 10 15 15 N 1.45823 * 112.53880 * 46.04844 * 14 13 11 16 16 C 1.45849 * 113.99188 * 70.58702 * 15 14 13 17 17 C 1.52267 * 112.42706 * 289.26337 * 16 15 14 18 18 C 1.52258 * 112.47381 * 312.87139 * 17 16 15 19 19 C 1.52333 * 109.57735 * 209.11240 * 11 10 9 20 20 H 1.10014 * 108.75092 * 47.90230 * 19 11 10 21 21 C 1.46544 * 111.91234 * 302.16290 * 15 14 13 22 22 H 0.96994 * 120.00390 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47345 * 59.99926 * 9 7 2 24 24 H 1.09001 * 109.47451 * 300.00465 * 9 7 2 25 25 H 1.00906 * 110.99377 * 56.04852 * 10 9 7 26 26 H 1.10592 * 107.98589 * 319.22688 * 13 11 10 27 27 H 1.08822 * 110.74552 * 203.37069 * 13 11 10 28 28 H 1.09718 * 109.09106 * 167.36938 * 14 13 11 29 29 H 1.09664 * 109.22140 * 284.54728 * 14 13 11 30 30 H 1.09637 * 109.26425 * 50.57219 * 16 15 14 31 31 H 1.09655 * 109.21882 * 168.02834 * 16 15 14 32 32 H 1.08718 * 110.77274 * 77.44376 * 17 16 15 33 33 H 1.10473 * 108.00890 * 193.68219 * 17 16 15 34 34 H 1.09619 * 109.27816 * 167.17563 * 18 17 16 35 35 H 1.09630 * 109.27436 * 284.83116 * 18 17 16 36 36 H 1.08995 * 109.72669 * 184.11188 * 21 15 14 37 37 H 1.08771 * 110.02628 * 304.86244 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0014 -2.5790 0.0013 11 6 5.4740 -2.6182 0.0002 12 1 5.8312 -1.7485 -0.5722 13 6 5.9877 -2.5051 1.4281 14 6 5.8900 -3.8125 2.2003 15 7 6.3747 -4.9531 1.4320 16 6 7.8200 -4.9653 1.2363 17 6 8.2852 -3.8797 0.2752 18 6 7.4450 -3.8266 -0.9935 19 6 5.9503 -3.8862 -0.6969 20 1 5.4070 -3.9925 -1.6476 21 6 5.6478 -5.1106 0.1693 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6796 0.8894 24 1 3.8746 -0.6807 -0.8905 25 1 3.6256 -3.0961 -0.7794 26 1 5.3717 -1.7522 1.9540 27 1 7.0075 -2.1256 1.4419 28 1 6.4735 -3.7272 3.1256 29 1 4.8453 -3.9863 2.4851 30 1 8.3171 -4.8258 2.2035 31 1 8.1232 -5.9440 0.8457 32 1 8.3023 -2.9105 0.7673 33 1 9.3280 -4.1029 -0.0132 34 1 7.6671 -2.9003 -1.5360 35 1 7.7165 -4.6671 -1.6428 36 1 5.9873 -6.0122 -0.3406 37 1 4.5793 -5.1785 0.3606 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307138390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:21 Heat of formation + Delta-G solvation = -4.413323 kcal Electronic energy + Delta-G solvation = -16346.838711 eV Core-core repulsion = 13930.108269 eV Total energy + Delta-G solvation = -2416.730442 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30679 -35.49090 -33.05547 -32.66074 -30.90892 -30.39399 -27.15918 -24.86137 -23.60676 -22.14479 -21.55928 -20.32663 -18.17384 -16.67967 -15.98144 -15.01024 -14.91084 -14.70107 -14.44533 -13.83345 -13.78335 -13.09439 -12.69383 -12.45081 -12.32944 -12.10377 -11.89828 -11.71942 -11.28789 -11.14455 -10.99837 -10.72542 -10.57642 -10.22029 -10.04618 -9.86114 -9.60746 -9.25536 -8.60997 -7.86614 -7.43648 -6.06555 -4.04163 3.26778 3.34538 3.37276 4.20102 4.40973 4.68291 4.76877 4.89813 5.11443 5.14760 5.26140 5.31311 5.35005 5.45862 5.53981 5.62284 5.68954 5.89207 5.92045 5.95359 6.00813 6.10245 6.15299 6.25378 6.38094 6.41447 6.49590 6.57348 6.79317 7.01266 7.37774 7.50978 7.62693 7.90787 8.35729 8.65021 9.01992 9.55729 11.06818 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.046633 B = 0.006933 C = 0.006770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.285253 B = 4037.586604 C = 4134.841282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.166 3.834 10 N -0.674 5.674 11 C 0.099 3.901 12 H 0.027 0.973 13 C -0.139 4.139 14 C 0.078 3.922 15 N -0.547 5.547 16 C 0.069 3.931 17 C -0.153 4.153 18 C -0.104 4.104 19 C -0.124 4.124 20 H 0.069 0.931 21 C 0.076 3.924 22 H 0.264 0.736 23 H 0.025 0.975 24 H -0.024 1.024 25 H 0.334 0.666 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.328 -7.955 0.385 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.039 3.961 10 N -0.305 5.305 11 C -0.012 4.012 12 H 0.045 0.955 13 C -0.179 4.179 14 C -0.050 4.050 15 N -0.268 5.268 16 C -0.059 4.059 17 C -0.192 4.192 18 C -0.142 4.142 19 C -0.144 4.144 20 H 0.088 0.912 21 C -0.052 4.052 22 H 0.073 0.927 23 H 0.043 0.957 24 H -0.006 1.006 25 H 0.152 0.848 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.019 -8.277 1.361 18.082 hybrid contribution 0.793 2.165 -1.510 2.756 sum 16.811 -6.112 -0.149 17.889 Atomic orbital electron populations 1.69895 1.06130 1.26850 1.51055 1.24904 0.94732 0.98892 0.94793 0.86836 0.80328 0.83991 0.78399 1.20427 1.21118 1.19261 1.21064 0.88963 0.94772 1.50446 0.90272 1.20031 0.96508 0.85140 0.94469 1.60593 1.04003 1.16469 1.49476 1.21200 0.90346 0.94959 0.94660 0.95533 1.21933 1.00002 0.99319 0.96651 1.21617 1.01484 0.87226 0.94704 1.60262 1.04008 1.41859 1.20689 1.21720 0.88120 0.97748 0.98361 1.22027 0.99041 1.00849 0.97325 1.21261 0.94448 1.01634 0.96887 1.21692 0.95713 0.97347 0.99640 0.91225 1.21867 0.99628 0.95406 0.88290 0.92659 0.95714 1.00608 0.84825 0.91470 0.92745 0.92158 0.90014 0.91516 0.91559 0.91549 0.92805 0.92553 0.92357 0.91570 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.51 -14.79 9.87 -34.44 -0.34 -15.13 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.17 4.07 4.23 -4.98 -0.02 4.05 16 10 N -0.67 -13.79 6.09 -108.09 -0.66 -14.45 16 11 C 0.10 1.67 2.13 -68.25 -0.15 1.53 16 12 H 0.03 0.49 7.69 -51.32 -0.39 0.09 16 13 C -0.14 -2.21 4.74 -27.58 -0.13 -2.34 16 14 C 0.08 1.13 5.76 -4.84 -0.03 1.10 16 15 N -0.55 -7.34 4.80 -236.60 -1.13 -8.47 16 16 C 0.07 0.78 5.76 -4.77 -0.03 0.75 16 17 C -0.15 -1.70 5.16 -27.48 -0.14 -1.84 16 18 C -0.10 -1.24 5.38 -27.36 -0.15 -1.39 16 19 C -0.12 -1.72 2.36 -91.21 -0.22 -1.93 16 20 H 0.07 0.97 7.89 -51.35 -0.41 0.56 16 21 C 0.08 1.03 5.62 -4.02 -0.02 1.00 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.02 0.63 6.29 -51.93 -0.33 0.30 16 24 H -0.02 -0.58 7.44 -51.93 -0.39 -0.97 16 25 H 0.33 6.67 8.09 -39.29 -0.32 6.35 16 26 H 0.07 1.21 7.20 -51.02 -0.37 0.85 16 27 H 0.05 0.78 5.76 -52.03 -0.30 0.49 16 28 H 0.06 0.78 8.11 -51.52 -0.42 0.37 16 29 H 0.08 1.33 8.20 -51.55 -0.42 0.91 16 30 H 0.07 0.70 8.10 -51.57 -0.42 0.28 16 31 H 0.07 0.68 8.20 -51.56 -0.42 0.26 16 32 H 0.07 0.79 5.68 -52.09 -0.30 0.49 16 33 H 0.05 0.51 8.26 -51.09 -0.42 0.09 16 34 H 0.06 0.69 8.16 -51.58 -0.42 0.26 16 35 H 0.06 0.62 8.19 -51.57 -0.42 0.20 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.32 7.97 -52.06 -0.41 0.91 16 LS Contribution 275.27 15.07 4.15 4.15 Total: -1.00 -29.94 275.27 -9.02 -38.96 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.17 Total: 2.00 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.32 Total: -12.30 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -1.02 Total: -50.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.94 -9.02 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307138390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.545 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds