Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.47157 * 111.00358 * 179.97438 * 10 9 7 12 12 H 1.10125 * 107.71004 * 32.95830 * 11 10 9 13 13 C 1.52292 * 109.64791 * 274.99823 * 11 10 9 14 14 C 1.52265 * 112.38634 * 191.07729 * 13 11 10 15 15 N 1.45829 * 112.53548 * 46.75937 * 14 13 11 16 16 C 1.45890 * 113.84552 * 71.31793 * 15 14 13 17 17 C 1.52303 * 112.21091 * 289.63918 * 16 15 14 18 18 C 1.52229 * 112.40337 * 312.84396 * 17 16 15 19 19 C 1.52218 * 112.63868 * 45.63941 * 18 17 16 20 20 H 1.10061 * 108.76078 * 189.01680 * 19 18 17 21 21 C 1.46529 * 112.21395 * 302.82653 * 15 14 13 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.00899 * 110.99658 * 56.03755 * 10 9 7 26 26 H 1.08624 * 110.94073 * 315.98364 * 13 11 10 27 27 H 1.10553 * 107.94506 * 72.21860 * 13 11 10 28 28 H 1.09672 * 109.05691 * 168.09919 * 14 13 11 29 29 H 1.09657 * 109.13920 * 285.33275 * 14 13 11 30 30 H 1.09590 * 109.32018 * 50.91360 * 16 15 14 31 31 H 1.09638 * 109.23544 * 168.54007 * 16 15 14 32 32 H 1.10516 * 107.95724 * 193.76104 * 17 16 15 33 33 H 1.08635 * 110.81958 * 77.61969 * 17 16 15 34 34 H 1.10029 * 108.70706 * 285.01677 * 18 17 16 35 35 H 1.09438 * 109.49223 * 168.45086 * 18 17 16 36 36 H 1.08816 * 109.98655 * 183.83346 * 21 15 14 37 37 H 1.08841 * 109.96029 * 305.12547 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5043 -4.9094 0.0011 12 1 0.5706 -4.7844 -0.5693 13 6 1.1508 -5.2995 1.4302 14 6 0.6683 -6.7399 1.5356 15 7 1.5255 -7.6709 0.8110 16 6 2.8268 -7.8827 1.4356 17 6 3.7243 -6.6570 1.3263 18 6 3.7467 -6.0781 -0.0814 19 6 2.3565 -5.9654 -0.6909 20 1 2.4565 -5.6974 -1.7537 21 6 1.6482 -7.3221 -0.6069 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8407 -3.5485 0.7818 26 1 1.9869 -5.1194 2.0999 27 1 0.3306 -4.6408 1.7702 28 1 0.6338 -7.0295 2.5928 29 1 -0.3525 -6.8069 1.1408 30 1 2.6850 -8.1319 2.4933 31 1 3.3233 -8.7345 0.9559 32 1 4.7534 -6.9640 1.5870 33 1 3.4365 -5.9018 2.0522 34 1 4.3620 -6.7287 -0.7208 35 1 4.2300 -5.0963 -0.0648 36 1 2.2379 -8.0754 -1.1255 37 1 0.6604 -7.2471 -1.0578 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307138391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = -34.492690 kcal Electronic energy + Delta-G solvation = -16330.668666 eV Core-core repulsion = 13912.633885 eV Total energy + Delta-G solvation = -2418.034781 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.53019 -37.29202 -35.01478 -34.08986 -32.34773 -31.39489 -28.12558 -26.27946 -24.89342 -23.90334 -22.73833 -22.32286 -19.81143 -18.87218 -17.00212 -16.53483 -16.17837 -15.77660 -15.63211 -15.53521 -15.30952 -14.57515 -14.34484 -13.88226 -13.73371 -13.58708 -13.04693 -12.94070 -12.81807 -12.54710 -12.40326 -12.23379 -12.02571 -11.94129 -11.67133 -11.20643 -10.89721 -10.72834 -10.66421 -9.27801 -9.00684 -8.75831 -6.47865 1.50181 1.59074 1.79050 2.52024 3.02373 3.08227 3.37063 3.60354 3.77910 3.98137 4.02915 4.12168 4.18502 4.24200 4.34542 4.50403 4.51294 4.59075 4.71892 4.76648 4.84762 4.90874 4.92886 4.96186 5.00506 5.15213 5.22908 5.26579 5.37065 5.44553 5.68839 5.95824 6.19294 6.31225 6.34432 6.48960 6.63214 7.34953 8.62793 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.049291 B = 0.006449 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.919183 B = 4340.883049 C = 4531.391892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.124 2.876 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.614 4.614 8 H 0.055 0.945 9 C 0.200 3.800 10 N -0.674 5.674 11 C 0.098 3.902 12 H 0.038 0.962 13 C -0.169 4.169 14 C 0.079 3.921 15 N -0.547 5.547 16 C 0.068 3.932 17 C -0.151 4.151 18 C -0.100 4.100 19 C -0.102 4.102 20 H 0.060 0.940 21 C 0.072 3.928 22 H 0.252 0.748 23 H -0.046 1.046 24 H -0.011 1.011 25 H 0.331 0.669 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.155 -16.392 2.643 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.234 4.234 3 Si 0.944 3.056 4 H -0.207 1.207 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.652 4.652 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.303 5.303 11 C -0.013 4.013 12 H 0.056 0.944 13 C -0.210 4.210 14 C -0.051 4.051 15 N -0.267 5.267 16 C -0.060 4.060 17 C -0.190 4.190 18 C -0.138 4.138 19 C -0.122 4.122 20 H 0.079 0.921 21 C -0.056 4.056 22 H 0.061 0.939 23 H -0.028 1.028 24 H 0.007 0.993 25 H 0.149 0.851 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.821 -15.184 1.978 16.382 hybrid contribution -0.230 -0.456 0.798 0.947 sum 5.591 -15.640 2.776 16.840 Atomic orbital electron populations 1.70932 1.07959 1.29582 1.48725 1.27536 0.96514 1.06928 0.92460 0.82851 0.74016 0.70605 0.78080 1.20672 1.19479 1.19211 1.22382 0.94986 0.92662 1.55131 0.92695 1.19318 0.91225 0.90308 0.91944 1.60682 1.19550 1.01032 1.49012 1.21357 0.95509 0.89710 0.94700 0.94391 1.22699 1.01234 0.99548 0.97500 1.21657 0.96500 0.87368 0.99538 1.60291 1.15789 1.47934 1.02725 1.21848 0.87294 0.96569 1.00268 1.21983 1.01631 0.98956 0.96420 1.21084 0.95386 1.00897 0.96422 1.21436 0.95883 0.95519 0.99405 0.92129 1.22053 1.00540 0.94040 0.88960 0.93870 1.02844 0.99284 0.85118 0.91522 0.95033 0.89758 0.91191 0.90216 0.89426 0.90780 0.93325 0.91177 0.93344 0.88452 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.34 13.65 21.45 0.29 -59.05 16 2 C -0.04 -2.20 5.46 84.65 0.46 -1.73 16 3 Si 1.12 51.20 29.90 68.60 2.05 53.25 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.61 -36.42 9.32 25.60 0.24 -36.18 16 8 H 0.05 3.20 7.81 -2.91 -0.02 3.17 16 9 C 0.20 11.06 4.51 85.56 0.39 11.45 16 10 N -0.67 -30.15 5.60 -495.97 -2.78 -32.93 16 11 C 0.10 3.55 2.18 44.41 0.10 3.65 16 12 H 0.04 1.55 7.74 -1.78 -0.01 1.54 16 13 C -0.17 -5.43 4.47 30.12 0.13 -5.30 16 14 C 0.08 1.98 5.76 86.26 0.50 2.48 16 15 N -0.55 -12.47 4.79 -901.86 -4.32 -16.79 16 16 C 0.07 1.32 5.77 86.26 0.50 1.82 16 17 C -0.15 -3.35 5.15 30.11 0.16 -3.19 16 18 C -0.10 -2.61 5.19 30.08 0.16 -2.45 16 19 C -0.10 -2.97 2.66 -11.18 -0.03 -3.00 16 20 H 0.06 1.91 8.23 -1.82 -0.01 1.89 16 21 C 0.07 1.70 5.69 86.47 0.49 2.19 16 22 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 23 H -0.05 -2.69 7.51 -2.39 -0.02 -2.71 16 24 H -0.01 -0.65 7.87 -2.39 -0.02 -0.67 16 25 H 0.33 14.46 7.88 -89.69 -0.71 13.76 16 26 H 0.07 2.14 5.41 -2.59 -0.01 2.12 16 27 H 0.03 1.15 7.85 -1.55 -0.01 1.14 16 28 H 0.08 1.86 8.09 -2.03 -0.02 1.84 16 29 H 0.07 1.76 8.20 -2.04 -0.02 1.75 16 30 H 0.08 1.39 8.09 -2.07 -0.02 1.37 16 31 H 0.09 1.43 8.20 -2.05 -0.02 1.41 16 32 H 0.07 1.38 8.27 -1.57 -0.01 1.36 16 33 H 0.05 1.24 5.67 -2.58 -0.01 1.22 16 34 H 0.07 1.56 8.23 -1.84 -0.02 1.55 16 35 H 0.05 1.49 7.31 -2.15 -0.02 1.47 16 36 H 0.10 1.89 8.12 -2.48 -0.02 1.87 16 37 H 0.07 1.72 8.13 -2.47 -0.02 1.70 16 Total: -1.00 -66.40 277.26 -1.20 -67.60 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.46 Total: 18.19 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.09 Total: -30.26 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -6.80 Total: -108.77 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -66.40 -1.20 -67.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307138391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.105 kcal (2) G-P(sol) polarization free energy of solvation -66.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds