Wall clock time and date at job start Mon Mar 30 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53137 * 1 3 3 H 1.08682 * 110.38209 * 2 1 4 4 C 1.54950 * 108.52174 * 239.40112 * 2 1 3 5 5 C 1.55160 * 104.47714 * 227.42968 * 4 2 1 6 6 C 1.55497 * 101.27729 * 37.11756 * 5 4 2 7 7 C 1.53710 * 110.72590 * 122.66846 * 2 1 3 8 8 C 1.52704 * 109.99217 * 217.46557 * 7 2 1 9 9 C 1.52997 * 110.35735 * 77.19279 * 8 7 2 10 10 C 1.53252 * 108.57339 * 56.69384 * 9 8 7 11 11 C 1.53229 * 108.32904 * 299.08305 * 10 9 8 12 12 H 1.09026 * 108.74859 * 295.51407 * 11 10 9 13 13 C 1.51052 * 108.95558 * 177.22188 * 11 10 9 14 14 H 1.07997 * 119.99953 * 359.61941 * 13 11 10 15 15 C 1.37885 * 119.99924 * 179.62747 * 13 11 10 16 16 N 1.31509 * 119.99893 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99720 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47125 * 89.99692 * 17 15 13 19 19 H 1.48498 * 109.46820 * 209.99846 * 17 15 13 20 20 H 1.48505 * 109.47078 * 329.99550 * 17 15 13 21 21 O 1.41071 * 112.39805 * 343.60199 * 7 2 1 22 22 H 1.09002 * 109.47355 * 179.14442 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.14445 * 1 2 3 24 24 H 1.09004 * 109.46952 * 299.14549 * 1 2 3 25 25 H 1.08894 * 110.19277 * 346.07162 * 4 2 1 26 26 H 1.08856 * 110.26432 * 108.69061 * 4 2 1 27 27 H 1.08747 * 110.91030 * 154.62503 * 5 4 2 28 28 H 1.08616 * 111.07318 * 279.28587 * 5 4 2 29 29 H 1.08326 * 110.99104 * 70.46940 * 6 5 4 30 30 H 1.08381 * 110.90833 * 196.19510 * 6 5 4 31 31 H 1.09191 * 109.34379 * 197.61277 * 8 7 2 32 32 H 1.09195 * 109.39319 * 316.87148 * 8 7 2 33 33 H 1.08927 * 109.88115 * 296.87601 * 9 8 7 34 34 H 1.09003 * 109.71877 * 176.30692 * 9 8 7 35 35 H 1.08848 * 109.67118 * 179.48080 * 10 9 8 36 36 H 1.08859 * 109.66261 * 58.65946 * 10 9 8 37 37 H 0.96999 * 119.99753 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 1 1.9099 1.0188 0.0000 4 6 2.0236 -0.7479 -1.2647 5 6 3.1105 -1.7231 -0.7402 6 6 2.5019 -2.1508 0.6253 7 6 2.0753 -0.7760 1.2102 8 6 3.3254 -0.0872 1.7531 9 6 2.9403 1.1480 2.5698 10 6 1.9865 0.7154 3.6887 11 6 0.7341 0.1093 3.0468 12 1 0.2193 0.8862 2.4811 13 6 -0.1863 -0.3846 4.1379 14 1 0.0999 -0.2806 5.1740 15 6 -1.3919 -0.9685 3.8109 16 7 -1.7406 -1.0948 2.5492 17 14 -2.5299 -1.5799 5.1603 18 1 -3.4513 -0.4874 5.5635 19 1 -3.3192 -2.7328 4.6574 20 1 -1.7237 -2.0056 6.3325 21 8 1.0953 -0.9764 2.2049 22 1 -0.3634 -1.0275 -0.0153 23 1 -0.3633 0.5271 -0.8822 24 1 -0.3633 0.5005 0.8976 25 1 1.2024 -1.3015 -1.7174 26 1 2.4537 -0.0443 -1.9753 27 1 3.2135 -2.5809 -1.4005 28 1 4.0585 -1.2120 -0.5990 29 1 1.6360 -2.7859 0.4824 30 1 3.2530 -2.6118 1.2562 31 1 3.8762 -0.7848 2.3873 32 1 3.9636 0.2149 0.9202 33 1 2.4445 1.8760 1.9289 34 1 3.8342 1.5937 3.0062 35 1 1.7079 1.5806 4.2875 36 1 2.4722 -0.0297 4.3163 37 1 -2.5889 -1.5052 2.3193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307334988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:57 Heat of formation + Delta-G solvation = -67.527726 kcal Electronic energy + Delta-G solvation = -17001.973523 eV Core-core repulsion = 14550.213484 eV Total energy + Delta-G solvation = -2451.760039 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.48654 -35.76201 -32.71796 -32.31969 -30.43548 -29.43774 -26.14480 -25.10531 -23.37205 -22.09583 -20.19837 -19.89753 -17.76755 -16.48372 -15.30061 -14.94988 -14.61691 -14.33599 -13.56559 -13.27021 -12.84150 -12.75466 -12.39788 -11.90632 -11.51186 -11.31366 -11.03659 -10.96065 -10.87301 -10.54354 -10.47417 -10.25730 -10.24490 -10.17412 -10.02360 -9.81273 -9.54757 -9.20311 -8.62548 -8.35383 -7.65047 -5.93959 -4.05475 3.33474 3.40694 3.44109 4.46435 4.89559 5.17384 5.22744 5.39006 5.59159 5.65733 5.70659 5.75820 5.96891 6.01511 6.09160 6.13571 6.26313 6.27530 6.36666 6.41914 6.47384 6.51269 6.64925 6.68459 6.79085 6.86263 6.91683 6.99391 7.01066 7.08268 7.23644 7.55673 7.74104 7.99716 8.37813 8.90022 9.46405 9.65086 11.11971 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.032795 B = 0.010426 C = 0.009097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.580089 B = 2685.057917 C = 3077.185956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 H 0.056 0.944 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.110 4.110 7 C 0.123 3.877 8 C -0.136 4.136 9 C -0.121 4.121 10 C -0.148 4.148 11 C 0.224 3.776 12 H 0.018 0.982 13 C -0.527 4.527 14 H 0.061 0.939 15 C 0.081 3.919 16 N -0.852 5.852 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 O -0.342 6.342 22 H 0.061 0.939 23 H 0.022 0.978 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.553 1.238 -5.324 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.134 4.134 3 H 0.074 0.926 4 C -0.157 4.157 5 C -0.164 4.164 6 C -0.148 4.148 7 C 0.081 3.919 8 C -0.174 4.174 9 C -0.159 4.159 10 C -0.186 4.186 11 C 0.169 3.831 12 H 0.035 0.965 13 C -0.565 4.565 14 H 0.079 0.921 15 C -0.126 4.126 16 N -0.488 5.488 17 Si 0.715 3.285 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 O -0.261 6.261 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.325 1.012 -5.426 9.172 hybrid contribution -0.420 -0.037 0.619 0.749 sum 6.905 0.975 -4.807 8.469 Atomic orbital electron populations 1.21739 0.92893 1.02942 1.00860 1.22387 0.98029 0.98164 0.94861 0.92565 1.22582 0.97992 0.97789 0.97306 1.22563 0.98046 0.98628 0.97150 1.22605 0.99887 0.97251 0.95038 1.21548 0.88208 0.93302 0.88800 1.22149 0.98383 0.97718 0.99140 1.21572 0.98940 0.97153 0.98194 1.22326 0.98769 1.00220 0.97269 1.19656 0.88726 0.86564 0.88135 0.96496 1.21106 1.00942 1.42636 0.91798 0.92087 1.25025 0.97545 0.94816 0.95166 1.70028 1.21362 1.41519 1.15909 0.86697 0.80866 0.78472 0.82465 1.20749 1.21211 1.19944 1.87472 1.54769 1.39108 1.44723 0.91978 0.95931 0.89975 0.91733 0.92986 0.92220 0.91796 0.90596 0.92126 0.92373 0.92684 0.92641 0.93462 0.92660 0.92683 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.11 37.23 0.30 -2.40 16 2 C -0.12 -2.17 2.89 -89.15 -0.26 -2.43 16 3 H 0.06 1.03 7.02 -52.11 -0.37 0.67 16 4 C -0.12 -1.88 6.40 -24.56 -0.16 -2.03 16 5 C -0.13 -1.86 6.63 -24.26 -0.16 -2.02 16 6 C -0.11 -1.98 6.02 -24.14 -0.15 -2.13 16 7 C 0.12 2.47 0.80 -89.14 -0.07 2.40 16 8 C -0.14 -2.44 4.34 -26.88 -0.12 -2.56 16 9 C -0.12 -2.22 5.89 -26.60 -0.16 -2.38 16 10 C -0.15 -3.19 5.35 -26.48 -0.14 -3.33 16 11 C 0.22 5.70 2.07 -27.59 -0.06 5.64 16 12 H 0.02 0.48 6.13 -51.91 -0.32 0.16 16 13 C -0.53 -14.69 8.79 -34.27 -0.30 -14.99 16 14 H 0.06 1.68 7.73 -52.49 -0.41 1.27 16 15 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 16 N -0.85 -24.10 12.54 55.43 0.69 -23.40 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 O -0.34 -8.56 7.93 -34.87 -0.28 -8.83 16 22 H 0.06 1.43 8.13 -51.93 -0.42 1.01 16 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 2.01 5.06 -51.93 -0.26 1.75 16 25 H 0.06 1.03 7.67 -51.99 -0.40 0.63 16 26 H 0.05 0.73 8.13 -52.01 -0.42 0.30 16 27 H 0.06 0.78 8.12 -52.07 -0.42 0.36 16 28 H 0.06 0.87 7.10 -52.14 -0.37 0.50 16 29 H 0.08 1.48 8.09 -52.31 -0.42 1.06 16 30 H 0.06 1.03 7.74 -52.28 -0.40 0.63 16 31 H 0.06 1.03 7.86 -51.82 -0.41 0.63 16 32 H 0.05 0.87 7.00 -51.82 -0.36 0.51 16 33 H 0.05 1.01 7.39 -51.97 -0.38 0.63 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 1.14 8.13 -52.01 -0.42 0.72 16 36 H 0.05 1.20 8.13 -52.01 -0.42 0.78 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 278.03 15.07 4.19 4.19 Total: -1.00 -28.18 278.03 -7.97 -36.15 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.20 Total: -0.27 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -1.36 Total: -24.09 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.69 Total: -23.40 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.28 Total: -8.83 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.18 -7.97 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307334988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.378 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds