Wall clock time and date at job start Mon Mar 30 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53137 * 1 3 3 H 1.08682 * 110.38209 * 2 1 4 4 C 1.54950 * 108.52174 * 239.40112 * 2 1 3 5 5 C 1.55160 * 104.47714 * 227.42968 * 4 2 1 6 6 C 1.55497 * 101.27729 * 37.11756 * 5 4 2 7 7 C 1.53710 * 110.72590 * 122.66846 * 2 1 3 8 8 C 1.52704 * 109.99217 * 217.46557 * 7 2 1 9 9 C 1.52997 * 110.35735 * 77.19279 * 8 7 2 10 10 C 1.53252 * 108.57339 * 56.69384 * 9 8 7 11 11 C 1.53229 * 108.32904 * 299.08305 * 10 9 8 12 12 H 1.09026 * 108.74859 * 295.51407 * 11 10 9 13 13 C 1.51052 * 108.95558 * 177.22188 * 11 10 9 14 14 H 1.07997 * 119.99953 * 359.61941 * 13 11 10 15 15 C 1.37885 * 119.99924 * 179.62747 * 13 11 10 16 16 N 1.31509 * 119.99893 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99720 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47125 * 89.99692 * 17 15 13 19 19 H 1.48498 * 109.46820 * 209.99846 * 17 15 13 20 20 H 1.48505 * 109.47078 * 329.99550 * 17 15 13 21 21 O 1.41071 * 112.39805 * 343.60199 * 7 2 1 22 22 H 1.09002 * 109.47355 * 179.14442 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.14445 * 1 2 3 24 24 H 1.09004 * 109.46952 * 299.14549 * 1 2 3 25 25 H 1.08894 * 110.19277 * 346.07162 * 4 2 1 26 26 H 1.08856 * 110.26432 * 108.69061 * 4 2 1 27 27 H 1.08747 * 110.91030 * 154.62503 * 5 4 2 28 28 H 1.08616 * 111.07318 * 279.28587 * 5 4 2 29 29 H 1.08326 * 110.99104 * 70.46940 * 6 5 4 30 30 H 1.08381 * 110.90833 * 196.19510 * 6 5 4 31 31 H 1.09191 * 109.34379 * 197.61277 * 8 7 2 32 32 H 1.09195 * 109.39319 * 316.87148 * 8 7 2 33 33 H 1.08927 * 109.88115 * 296.87601 * 9 8 7 34 34 H 1.09003 * 109.71877 * 176.30692 * 9 8 7 35 35 H 1.08848 * 109.67118 * 179.48080 * 10 9 8 36 36 H 1.08859 * 109.66261 * 58.65946 * 10 9 8 37 37 H 0.96999 * 119.99753 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 1 1.9099 1.0188 0.0000 4 6 2.0236 -0.7479 -1.2647 5 6 3.1105 -1.7231 -0.7402 6 6 2.5019 -2.1508 0.6253 7 6 2.0753 -0.7760 1.2102 8 6 3.3254 -0.0872 1.7531 9 6 2.9403 1.1480 2.5698 10 6 1.9865 0.7154 3.6887 11 6 0.7341 0.1093 3.0468 12 1 0.2193 0.8862 2.4811 13 6 -0.1863 -0.3846 4.1379 14 1 0.0999 -0.2806 5.1740 15 6 -1.3919 -0.9685 3.8109 16 7 -1.7406 -1.0948 2.5492 17 14 -2.5299 -1.5799 5.1603 18 1 -3.4513 -0.4874 5.5635 19 1 -3.3192 -2.7328 4.6574 20 1 -1.7237 -2.0056 6.3325 21 8 1.0953 -0.9764 2.2049 22 1 -0.3634 -1.0275 -0.0153 23 1 -0.3633 0.5271 -0.8822 24 1 -0.3633 0.5005 0.8976 25 1 1.2024 -1.3015 -1.7174 26 1 2.4537 -0.0443 -1.9753 27 1 3.2135 -2.5809 -1.4005 28 1 4.0585 -1.2120 -0.5990 29 1 1.6360 -2.7859 0.4824 30 1 3.2530 -2.6118 1.2562 31 1 3.8762 -0.7848 2.3873 32 1 3.9636 0.2149 0.9202 33 1 2.4445 1.8760 1.9289 34 1 3.8342 1.5937 3.0062 35 1 1.7079 1.5806 4.2875 36 1 2.4722 -0.0297 4.3163 37 1 -2.5889 -1.5052 2.3193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307334988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:57 Heat of formation + Delta-G solvation = -82.766334 kcal Electronic energy + Delta-G solvation = -17002.634319 eV Core-core repulsion = 14550.213484 eV Total energy + Delta-G solvation = -2452.420835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04713 -37.37916 -34.57283 -34.14999 -32.01817 -31.07748 -27.83747 -26.79988 -24.95424 -23.87753 -21.67496 -21.37659 -19.39809 -18.54957 -16.88679 -16.50381 -16.35937 -16.11040 -15.04527 -14.99376 -14.56625 -14.26814 -13.89218 -13.61481 -13.04039 -12.94533 -12.82795 -12.71768 -12.60276 -12.29117 -12.17280 -11.88347 -11.75774 -11.68056 -11.49584 -11.36196 -11.18050 -10.90553 -10.65576 -10.19032 -9.44618 -8.04273 -6.23696 1.41100 1.42662 1.52272 2.44328 3.08837 3.58522 3.80289 3.87428 4.10341 4.17429 4.28353 4.33094 4.48676 4.53639 4.64843 4.76555 4.82150 4.86274 4.93116 4.96165 5.04705 5.08393 5.12978 5.18984 5.26312 5.30016 5.33756 5.36191 5.49474 5.56778 5.63029 5.68247 5.80909 5.99605 6.33473 6.77922 7.45807 7.71578 9.00112 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.032795 B = 0.010426 C = 0.009097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.580089 B = 2685.057917 C = 3077.185956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.115 4.115 3 H 0.064 0.936 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.113 4.113 7 C 0.102 3.898 8 C -0.131 4.131 9 C -0.115 4.115 10 C -0.144 4.144 11 C 0.227 3.773 12 H -0.012 1.012 13 C -0.557 4.557 14 H 0.055 0.945 15 C 0.033 3.967 16 N -0.876 5.876 17 Si 0.951 3.049 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.272 1.272 21 O -0.373 6.373 22 H 0.032 0.968 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.480 1.433 -6.176 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.134 4.134 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.150 4.150 7 C 0.061 3.939 8 C -0.169 4.169 9 C -0.153 4.153 10 C -0.182 4.182 11 C 0.172 3.828 12 H 0.005 0.995 13 C -0.594 4.594 14 H 0.074 0.926 15 C -0.171 4.171 16 N -0.512 5.512 17 Si 0.776 3.224 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.196 1.196 21 O -0.292 6.292 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.262 1.212 -6.279 11.255 hybrid contribution -1.037 -0.092 0.866 1.355 sum 8.225 1.119 -5.413 9.909 Atomic orbital electron populations 1.21548 0.95283 1.00630 0.99789 1.22370 0.95845 0.99024 0.96193 0.91719 1.22545 0.98286 0.98214 0.96086 1.22544 0.98117 0.99204 0.94911 1.22617 0.99269 0.95755 0.97377 1.21993 0.88293 0.95291 0.88284 1.22110 0.97445 0.97200 1.00128 1.21542 0.99175 0.97497 0.97057 1.22208 0.97986 0.99787 0.98233 1.19391 0.89946 0.85941 0.87551 0.99494 1.21498 1.02353 1.43129 0.92434 0.92635 1.25770 0.98983 0.95023 0.97316 1.70174 1.21555 1.41984 1.17466 0.85701 0.78906 0.78004 0.79764 1.19878 1.20973 1.19648 1.87354 1.56733 1.39036 1.46065 0.94897 0.94076 0.93742 0.92440 0.90155 0.90030 0.89567 0.93354 0.91391 0.92230 0.89430 0.92770 0.90312 0.92538 0.93404 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.11 72.03 0.58 -4.43 16 2 C -0.12 -4.20 2.89 -9.84 -0.03 -4.23 16 3 H 0.06 2.23 7.02 -2.55 -0.02 2.21 16 4 C -0.11 -3.24 6.40 32.00 0.20 -3.04 16 5 C -0.11 -2.83 6.63 32.19 0.21 -2.62 16 6 C -0.11 -3.90 6.02 32.27 0.19 -3.70 16 7 C 0.10 4.01 0.80 -9.84 -0.01 4.00 16 8 C -0.13 -4.34 4.34 30.50 0.13 -4.21 16 9 C -0.12 -3.98 5.89 30.68 0.18 -3.80 16 10 C -0.14 -6.22 5.35 30.76 0.16 -6.06 16 11 C 0.23 11.91 2.07 30.04 0.06 11.97 16 12 H -0.01 -0.70 6.13 -2.37 -0.01 -0.71 16 13 C -0.56 -32.07 8.79 25.71 0.23 -31.84 16 14 H 0.06 3.15 7.73 -2.91 -0.02 3.12 16 15 C 0.03 1.87 5.40 84.66 0.46 2.33 16 16 N -0.88 -51.47 12.54 21.45 0.27 -51.20 16 17 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 O -0.37 -19.13 7.93 -147.68 -1.17 -20.30 16 22 H 0.03 1.57 8.13 -2.39 -0.02 1.55 16 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.04 2.27 5.06 -2.38 -0.01 2.26 16 25 H 0.06 1.72 7.67 -2.44 -0.02 1.70 16 26 H 0.08 1.88 8.13 -2.46 -0.02 1.86 16 27 H 0.08 1.79 8.12 -2.52 -0.02 1.77 16 28 H 0.09 1.88 7.10 -2.59 -0.02 1.86 16 29 H 0.05 1.91 8.09 -2.74 -0.02 1.89 16 30 H 0.07 2.20 7.74 -2.71 -0.02 2.18 16 31 H 0.06 1.95 7.86 -2.29 -0.02 1.94 16 32 H 0.09 2.35 7.00 -2.28 -0.02 2.33 16 33 H 0.05 1.88 7.39 -2.43 -0.02 1.86 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 2.35 8.13 -2.47 -0.02 2.33 16 36 H 0.05 2.09 8.13 -2.46 -0.02 2.07 16 37 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -63.23 278.03 4.52 -58.71 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.01 Total: 11.68 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 2.38 Total: -45.64 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.27 Total: -51.20 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.17 Total: -20.30 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.23 4.52 -58.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307334988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.053 kcal (2) G-P(sol) polarization free energy of solvation -63.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds