Wall clock time and date at job start Mon Mar 30 2020 02:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46976 * 2 1 4 4 C 1.53005 * 109.47061 * 239.99919 * 2 1 3 5 5 C 1.53006 * 109.47346 * 179.72231 * 4 2 1 6 6 C 1.53024 * 109.45237 * 60.28383 * 5 4 2 7 7 C 1.52823 * 109.51757 * 300.40420 * 6 5 4 8 8 C 1.54246 * 109.39281 * 179.53565 * 7 6 5 9 9 C 1.55334 * 102.20092 * 98.33428 * 8 7 6 10 10 C 1.54967 * 100.95503 * 34.01683 * 9 8 7 11 11 H 1.08998 * 110.30411 * 82.57201 * 10 9 8 12 12 C 1.50703 * 110.30557 * 204.73652 * 10 9 8 13 13 H 1.08000 * 119.99830 * 357.17805 * 12 10 9 14 14 C 1.37870 * 119.99535 * 177.17467 * 12 10 9 15 15 N 1.31519 * 120.00217 * 179.97438 * 14 12 10 16 16 Si 1.86797 * 120.00463 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47228 * 89.99519 * 16 14 12 18 18 H 1.48497 * 109.47491 * 209.99592 * 16 14 12 19 19 H 1.48503 * 109.47068 * 329.99765 * 16 14 12 20 20 O 1.43044 * 110.04864 * 297.75267 * 7 6 5 21 21 C 1.52805 * 110.10000 * 59.26702 * 7 6 5 22 22 H 1.09002 * 109.47367 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47210 * 300.00192 * 1 2 3 24 24 H 1.09003 * 109.47769 * 60.00260 * 1 2 3 25 25 H 1.09000 * 109.47441 * 59.72370 * 4 2 1 26 26 H 1.08998 * 109.46923 * 299.72023 * 4 2 1 27 27 H 1.09003 * 109.47380 * 300.29599 * 5 4 2 28 28 H 1.08994 * 109.47960 * 180.27906 * 5 4 2 29 29 H 1.08996 * 109.46631 * 180.38872 * 6 5 4 30 30 H 1.09003 * 109.46465 * 60.41220 * 6 5 4 31 31 H 1.09001 * 110.85532 * 216.51413 * 8 7 6 32 32 H 1.08998 * 110.85383 * 340.15547 * 8 7 6 33 33 H 1.08999 * 111.12317 * 151.94002 * 9 8 7 34 34 H 1.09004 * 111.12278 * 276.10020 * 9 8 7 35 35 H 0.97001 * 120.00401 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.46970 * 60.76067 * 21 7 6 37 37 H 1.09003 * 109.46239 * 180.73458 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7153 -1.2528 6 6 4.0854 -1.4389 -0.0069 7 6 3.5682 -0.7313 1.2450 8 6 4.0797 -1.4697 2.4989 9 6 5.3079 -0.6110 2.9075 10 6 4.8275 0.8040 2.4971 11 1 4.1968 1.2304 3.2771 12 6 6.0092 1.7005 2.2301 13 1 7.0126 1.3307 2.3812 14 6 5.8091 2.9927 1.7929 15 7 6.8402 3.7753 1.5603 16 14 4.0736 3.6325 1.5322 17 1 3.5778 4.2455 2.7906 18 1 4.0790 4.6527 0.4532 19 1 3.1843 2.5078 1.1455 20 8 4.0679 0.6082 1.2931 21 6 2.0402 -0.7215 1.2493 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3635 0.5138 -0.8900 25 1 1.6726 -0.2104 -2.1393 26 1 1.6807 -1.7504 -1.2467 27 1 3.9294 0.3138 -1.2501 28 1 3.9334 -1.2247 -2.1452 29 1 5.1753 -1.4287 -0.0057 30 1 3.7319 -2.4700 -0.0134 31 1 3.3252 -1.4670 3.2857 32 1 4.3822 -2.4877 2.2534 33 1 5.4880 -0.6687 3.9809 34 1 6.1954 -0.9027 2.3459 35 1 6.6995 4.6845 1.2531 36 1 1.6703 -1.7468 1.2530 37 1 1.6827 -0.2034 2.1392 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307358442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:34 Heat of formation + Delta-G solvation = -74.393944 kcal Electronic energy + Delta-G solvation = -16805.141714 eV Core-core repulsion = 14353.083933 eV Total energy + Delta-G solvation = -2452.057781 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.60617 -36.41669 -32.62762 -31.88709 -31.22061 -29.97424 -26.56421 -26.08068 -23.05581 -21.60963 -20.47724 -19.86193 -18.71513 -16.73400 -15.47341 -15.11557 -14.78826 -14.23557 -13.91121 -13.45337 -13.03943 -12.62187 -12.50740 -12.32723 -11.98568 -11.96275 -11.49150 -11.42817 -11.02757 -10.99364 -10.74669 -10.54258 -10.33483 -10.08369 -9.97382 -9.71210 -9.48707 -9.37959 -9.25724 -8.49276 -8.07892 -6.05118 -4.12680 3.42477 3.48217 3.73950 4.58575 4.74867 5.05227 5.09431 5.20402 5.40270 5.45435 5.52241 5.56120 5.66379 5.79198 5.83946 5.90821 6.00653 6.04102 6.07150 6.12417 6.14616 6.28503 6.34168 6.34977 6.46282 6.52419 6.59217 6.70816 6.73858 6.78702 6.92890 6.95839 7.30996 7.69189 8.45540 8.49695 8.96874 9.59974 11.05600 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.026190 B = 0.012054 C = 0.010164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.850706 B = 2322.373279 C = 2754.222487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.081 0.919 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.112 4.112 7 C 0.102 3.898 8 C -0.149 4.149 9 C -0.135 4.135 10 C 0.172 3.828 11 H 0.024 0.976 12 C -0.521 4.521 13 H 0.076 0.924 14 C 0.084 3.916 15 N -0.896 5.896 16 Si 0.866 3.134 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.216 1.216 20 O -0.361 6.361 21 C -0.110 4.110 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 -10.264 -2.491 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.099 0.901 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.150 4.150 7 C 0.062 3.938 8 C -0.187 4.187 9 C -0.172 4.172 10 C 0.117 3.883 11 H 0.041 0.959 12 C -0.558 4.558 13 H 0.094 0.906 14 C -0.120 4.120 15 N -0.533 5.533 16 Si 0.692 3.308 17 H -0.214 1.214 18 H -0.220 1.220 19 H -0.139 1.139 20 O -0.281 6.281 21 C -0.147 4.147 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.544 -9.952 -2.703 14.749 hybrid contribution -0.676 0.339 0.039 0.757 sum -11.220 -9.613 -2.664 15.013 Atomic orbital electron populations 1.21838 0.96208 1.00976 1.01183 1.21117 0.94160 1.01163 0.94745 0.90067 1.21541 0.96159 0.99579 0.97264 1.21438 0.94896 1.02131 0.96868 1.21729 1.00942 0.97508 0.94795 1.21706 0.92207 0.86305 0.93628 1.23169 0.98639 0.99218 0.97684 1.23123 0.97063 0.96596 1.00454 1.20927 0.90671 0.92540 0.84165 0.95883 1.21044 0.92362 0.95573 1.46831 0.90617 1.25025 0.97361 0.96592 0.93045 1.69935 1.30647 1.07788 1.44980 0.87056 0.86580 0.79621 0.77499 1.21388 1.21998 1.13920 1.88853 1.70076 1.24777 1.44439 1.21850 0.95679 0.99457 0.97765 0.93269 0.93049 0.93164 0.92762 0.92872 0.90738 0.93033 0.91598 0.92696 0.91775 0.91620 0.91886 0.91175 0.92680 0.92373 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.19 37.16 0.34 -1.51 16 2 C -0.09 -1.46 2.60 -90.61 -0.24 -1.70 16 3 H 0.08 1.52 7.31 -51.93 -0.38 1.14 16 4 C -0.11 -1.55 5.20 -26.73 -0.14 -1.69 16 5 C -0.12 -1.87 5.80 -26.72 -0.16 -2.02 16 6 C -0.11 -1.86 4.76 -26.81 -0.13 -1.99 16 7 C 0.10 1.85 0.78 -90.16 -0.07 1.78 16 8 C -0.15 -2.51 6.06 -24.84 -0.15 -2.66 16 9 C -0.13 -2.68 6.53 -24.45 -0.16 -2.84 16 10 C 0.17 4.14 2.69 -26.84 -0.07 4.07 16 11 H 0.02 0.57 7.64 -51.93 -0.40 0.18 16 12 C -0.52 -14.96 9.39 -34.44 -0.32 -15.28 16 13 H 0.08 2.33 8.01 -52.49 -0.42 1.91 16 14 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 15 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 16 Si 0.87 22.14 27.07 -169.99 -4.60 17.53 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 18 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 19 H -0.22 -5.30 4.90 56.52 0.28 -5.02 16 20 O -0.36 -8.29 6.31 -35.23 -0.22 -8.51 16 21 C -0.11 -1.76 4.06 -26.82 -0.11 -1.87 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.42 7.78 -51.93 -0.40 1.02 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.99 7.83 -51.93 -0.41 0.59 16 32 H 0.07 0.96 7.80 -51.93 -0.40 0.56 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -30.41 281.28 -7.85 -38.26 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.74 Total: -1.05 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.30 Total: -23.33 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.14 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.22 Total: -8.51 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.60 Total: 17.53 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.41 -7.85 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307358442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.134 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds