Wall clock time and date at job start Mon Mar 30 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46692 * 2 1 4 4 C 1.50700 * 109.47061 * 120.00072 * 2 1 3 5 5 H 1.07995 * 119.99692 * 125.39800 * 4 2 1 6 6 C 1.37883 * 119.99878 * 305.39911 * 4 2 1 7 7 N 1.31509 * 120.00183 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99636 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46953 * 90.00216 * 8 6 4 10 10 H 1.48496 * 109.46730 * 210.00206 * 8 6 4 11 11 H 1.48505 * 109.47168 * 330.00074 * 8 6 4 12 12 C 1.52993 * 109.47262 * 240.00258 * 2 1 3 13 13 H 1.09002 * 109.47450 * 70.60212 * 12 2 1 14 14 C 1.52997 * 109.47508 * 190.60226 * 12 2 1 15 15 C 1.52997 * 109.47055 * 119.99787 * 14 12 2 16 16 C 1.52998 * 109.47175 * 60.00211 * 15 14 12 17 17 C 1.53001 * 109.47459 * 299.99964 * 16 15 14 18 18 C 1.53001 * 109.46893 * 359.97438 * 17 16 15 19 19 C 1.53002 * 109.47059 * 300.00106 * 18 17 16 20 20 C 1.53001 * 109.47364 * 59.99780 * 19 18 17 21 21 H 1.09005 * 109.47165 * 67.28602 * 1 2 3 22 22 H 1.08994 * 109.47067 * 187.28881 * 1 2 3 23 23 H 1.08998 * 109.46940 * 307.28910 * 1 2 3 24 24 H 0.96709 * 113.99708 * 179.97438 * 3 2 1 25 25 H 0.96997 * 120.00139 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.47419 * 239.99839 * 14 12 2 27 27 H 1.09004 * 109.46412 * 0.02562 * 14 12 2 28 28 H 1.08996 * 109.47212 * 180.02562 * 15 14 12 29 29 H 1.09001 * 109.47077 * 60.00084 * 16 15 14 30 30 H 1.09001 * 109.47253 * 179.97438 * 16 15 14 31 31 H 1.08997 * 109.47095 * 240.00385 * 17 16 15 32 32 H 1.08993 * 109.47113 * 119.99550 * 17 16 15 33 33 H 1.08992 * 109.47291 * 180.02562 * 18 17 16 34 34 H 1.09005 * 109.47254 * 300.00165 * 19 18 17 35 35 H 1.09005 * 109.47163 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47335 * 240.00285 * 20 19 18 37 37 H 1.09006 * 109.47096 * 120.00181 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.7231 -1.5349 1.1337 6 6 1.6100 -0.3077 2.4797 7 7 0.7684 0.6959 2.5974 8 14 2.2333 -1.1879 4.0049 9 1 3.4740 -0.5281 4.4849 10 1 1.1982 -1.1290 5.0680 11 1 2.5230 -2.6064 3.6742 12 6 2.0401 -0.7212 -1.2492 13 1 1.8394 -0.1098 -2.1291 14 6 3.5468 -0.9551 -1.1237 15 6 3.8362 -2.4564 -1.1798 16 6 3.3417 -3.0217 -2.5128 17 6 1.8349 -2.7877 -2.6384 18 6 1.3248 -2.0671 -1.3889 19 6 1.6064 -2.9257 -0.1542 20 6 3.1132 -3.1597 -0.0286 21 1 -0.3634 0.3968 -0.9480 22 1 -0.3633 -1.0193 0.1304 23 1 -0.3633 0.6226 0.8176 24 1 2.9704 1.4237 0.0004 25 1 0.4710 0.9790 3.4762 26 1 4.0618 -0.4549 -1.9439 27 1 3.8990 -0.5528 -0.1738 28 1 4.9096 -2.6232 -1.0899 29 1 3.8566 -2.5215 -3.3330 30 1 3.5482 -4.0912 -2.5530 31 1 1.3254 -3.7462 -2.7380 32 1 1.6342 -2.1764 -3.5182 33 1 0.2513 -1.9008 -1.4781 34 1 1.0970 -3.8842 -0.2543 35 1 1.2426 -2.4125 0.7360 36 1 3.3194 -4.2293 -0.0691 37 1 3.4654 -2.7574 0.9213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307395334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:07 Heat of formation + Delta-G solvation = -56.341987 kcal Electronic energy + Delta-G solvation = -17419.563110 eV Core-core repulsion = 14968.288121 eV Total energy + Delta-G solvation = -2451.274989 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.25736 -35.74225 -32.34781 -31.22858 -30.52897 -29.94575 -27.61394 -25.20404 -22.20112 -21.86487 -21.15651 -19.23386 -17.24555 -15.86583 -15.70532 -15.27010 -14.85847 -14.17880 -13.75526 -12.77456 -12.51774 -12.00636 -11.59515 -11.45339 -11.38028 -11.35745 -11.27819 -11.11054 -11.00287 -10.79678 -10.60197 -10.46172 -10.17351 -9.96246 -9.58538 -9.30279 -9.10563 -8.99194 -8.41726 -8.30924 -7.85812 -5.88601 -4.01446 3.28825 3.37130 3.38607 4.42375 5.17492 5.29553 5.29992 5.32732 5.85852 5.93233 5.97108 6.05640 6.06470 6.09233 6.18740 6.27093 6.30082 6.35359 6.43091 6.50753 6.65362 6.76692 6.83924 6.92343 7.06442 7.11699 7.15801 7.21939 7.28270 7.35305 7.63247 7.75612 7.93395 8.22613 8.44195 8.97035 9.47233 9.68669 11.09602 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.030509 B = 0.013235 C = 0.011240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.554772 B = 2115.081778 C = 2490.445156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.252 3.748 3 O -0.570 6.570 4 C -0.561 4.561 5 H 0.091 0.909 6 C 0.076 3.924 7 N -0.861 5.861 8 Si 0.875 3.125 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.272 1.272 12 C -0.098 4.098 13 H 0.044 0.956 14 C -0.106 4.106 15 C -0.082 4.082 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.066 4.066 19 C -0.134 4.134 20 C -0.109 4.109 21 H 0.005 0.995 22 H 0.043 0.957 23 H 0.091 0.909 24 H 0.344 0.656 25 H 0.256 0.744 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.124 0.876 36 H 0.039 0.961 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -6.047 -6.397 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.213 3.787 3 O -0.373 6.373 4 C -0.598 4.598 5 H 0.108 0.892 6 C -0.128 4.128 7 N -0.498 5.498 8 Si 0.703 3.297 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.197 1.197 12 C -0.117 4.117 13 H 0.062 0.938 14 C -0.143 4.143 15 C -0.100 4.100 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.085 4.085 19 C -0.171 4.171 20 C -0.146 4.146 21 H 0.024 0.976 22 H 0.062 0.938 23 H 0.109 0.891 24 H 0.188 0.812 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.142 0.858 36 H 0.057 0.943 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.672 -5.814 -6.273 8.961 hybrid contribution 0.932 -0.685 0.773 1.391 sum 3.604 -6.499 -5.499 9.245 Atomic orbital electron populations 1.21720 0.96355 1.00556 0.99626 1.18791 0.91311 0.79094 0.89523 1.86515 1.23417 1.30208 1.97173 1.22364 1.28675 1.17973 0.90773 0.89188 1.25035 0.94610 0.94439 0.98737 1.69988 1.31288 1.25710 1.22813 0.86876 0.78705 0.80387 0.83714 1.20788 1.21387 1.19668 1.21789 0.94460 0.95667 0.99759 0.93784 1.21615 0.96748 0.94454 1.01509 1.20979 0.97934 0.96369 0.94723 1.21505 0.96324 0.99471 0.97333 1.21593 0.95642 0.99535 0.98443 1.20871 0.98821 0.95033 0.93770 1.22164 0.95102 0.97820 1.01979 1.21602 0.96877 0.97582 0.98494 0.97565 0.93833 0.89054 0.81188 0.93360 0.94337 0.90174 0.92814 0.93095 0.93169 0.93130 0.93142 0.91930 0.95159 0.85804 0.94268 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 7.43 37.16 0.28 -2.78 16 2 C 0.25 5.97 0.47 -91.77 -0.04 5.92 16 3 O -0.57 -14.41 12.67 -35.23 -0.45 -14.86 16 4 C -0.56 -13.77 4.05 -34.44 -0.14 -13.91 16 5 H 0.09 2.11 2.20 -52.49 -0.12 1.99 16 6 C 0.08 2.00 5.25 -17.82 -0.09 1.90 16 7 N -0.86 -24.02 10.81 55.43 0.60 -23.42 16 8 Si 0.88 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 C -0.10 -1.98 2.05 -90.60 -0.19 -2.17 16 13 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.11 -1.96 4.62 -26.73 -0.12 -2.08 16 15 C -0.08 -1.37 3.20 -90.59 -0.29 -1.66 16 16 C -0.11 -1.65 5.71 -26.73 -0.15 -1.81 16 17 C -0.11 -1.83 5.71 -26.73 -0.15 -1.98 16 18 C -0.07 -1.24 2.17 -90.59 -0.20 -1.44 16 19 C -0.13 -2.58 4.92 -26.73 -0.13 -2.71 16 20 C -0.11 -1.96 5.15 -26.70 -0.14 -2.10 16 21 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 22 H 0.04 1.01 6.12 -51.93 -0.32 0.69 16 23 H 0.09 2.50 5.96 -51.93 -0.31 2.19 16 24 H 0.34 7.75 8.12 45.56 0.37 8.12 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.61 5.79 -51.93 -0.30 1.31 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.21 6.47 -51.93 -0.34 0.87 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.12 2.77 4.28 -51.93 -0.22 2.55 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.45 5.97 -51.93 -0.31 1.14 16 LS Contribution 259.69 15.07 3.91 3.91 Total: -1.00 -27.13 259.69 -7.23 -34.36 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.90 Total: 9.55 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -1.37 Total: -24.81 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.60 Total: -23.42 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.45 Total: -14.86 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.13 -7.23 -34.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307395334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.983 kcal (2) G-P(sol) polarization free energy of solvation -27.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds