Wall clock time and date at job start Mon Mar 30 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42892 * 109.47342 * 2 1 4 4 C 1.50700 * 109.47112 * 240.00006 * 2 1 3 5 5 H 1.08006 * 119.99652 * 240.00463 * 4 2 1 6 6 C 1.37869 * 120.00232 * 60.27748 * 4 2 1 7 7 N 1.31516 * 119.99941 * 359.72130 * 6 4 2 8 8 Si 1.86801 * 120.00279 * 179.72526 * 6 4 2 9 9 H 1.48505 * 109.46914 * 89.99726 * 8 6 4 10 10 H 1.48499 * 109.47247 * 209.99957 * 8 6 4 11 11 H 1.48497 * 109.46706 * 330.00079 * 8 6 4 12 12 C 1.53004 * 109.46575 * 120.00105 * 2 1 3 13 13 H 1.08992 * 109.47333 * 66.75519 * 12 2 1 14 14 C 1.53008 * 109.46583 * 186.75485 * 12 2 1 15 15 C 1.52998 * 109.46921 * 119.99870 * 14 12 2 16 16 C 1.53001 * 109.47303 * 299.99840 * 15 14 12 17 17 C 1.52994 * 109.46946 * 60.00265 * 16 15 14 18 18 C 1.52995 * 109.47161 * 306.75062 * 12 2 1 19 19 C 1.53004 * 109.47195 * 180.02562 * 18 12 2 20 20 C 1.53000 * 109.46987 * 59.99986 * 19 18 12 21 21 H 1.08993 * 109.47281 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46817 * 299.99986 * 1 2 3 23 23 H 1.09004 * 109.46789 * 59.99777 * 1 2 3 24 24 H 0.96701 * 114.00476 * 179.97438 * 3 2 1 25 25 H 0.96998 * 120.00356 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46710 * 239.99848 * 14 12 2 27 27 H 1.08998 * 109.46974 * 359.97438 * 14 12 2 28 28 H 1.09000 * 109.47020 * 179.97438 * 15 14 12 29 29 H 1.09001 * 109.46737 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.46765 * 299.99792 * 16 15 14 31 31 H 1.09004 * 109.47139 * 240.00045 * 17 16 15 32 32 H 1.09003 * 109.47259 * 120.00183 * 17 16 15 33 33 H 1.09000 * 109.46927 * 60.00354 * 18 12 2 34 34 H 1.09001 * 109.46829 * 300.00035 * 19 18 12 35 35 H 1.09003 * 109.47136 * 180.02562 * 19 18 12 36 36 H 1.08998 * 109.46946 * 240.00144 * 20 19 18 37 37 H 1.09002 * 109.46777 * 120.00183 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.7041 -0.2361 -2.4827 7 7 0.9480 0.8332 -2.6034 8 14 2.3331 -1.1122 -4.0079 9 1 1.3569 -2.1532 -4.4187 10 1 2.5020 -0.1300 -5.1087 11 1 3.6403 -1.7500 -3.7085 12 6 2.0399 -0.7213 1.2493 13 1 1.7787 -1.7778 1.1909 14 6 3.5606 -0.5760 1.3370 15 6 3.9304 0.1374 2.6390 16 6 3.2835 1.5237 2.6624 17 6 1.7630 1.3785 2.5747 18 6 1.3962 -0.1046 2.4927 19 6 1.9065 -0.8255 3.7420 20 6 3.4270 -0.6798 3.8295 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.9704 1.4236 0.0004 25 1 0.7166 1.1667 -3.4844 26 1 4.0214 -1.5637 1.3203 27 1 3.9194 0.0064 0.4885 28 1 5.0137 0.2405 2.7017 29 1 3.5474 2.0321 3.5898 30 1 3.6424 2.1065 1.8141 31 1 1.3996 1.8923 1.6847 32 1 1.3043 1.8178 3.4605 33 1 0.3129 -0.2081 2.4301 34 1 1.6455 -1.8822 3.6839 35 1 1.4475 -0.3865 4.6279 36 1 3.8882 -1.6673 3.8129 37 1 3.6905 -0.1713 4.7569 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307395335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:09 Heat of formation + Delta-G solvation = -86.075557 kcal Electronic energy + Delta-G solvation = -17206.812304 eV Core-core repulsion = 14754.247971 eV Total energy + Delta-G solvation = -2452.564333 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.64985 -37.47359 -34.22020 -32.87267 -31.93680 -31.37954 -29.52334 -27.18770 -23.84298 -23.24678 -22.66986 -20.96007 -18.83826 -17.39872 -17.23780 -16.85712 -16.61268 -16.33647 -15.48401 -14.41357 -14.32804 -13.40886 -13.21809 -13.10185 -13.02832 -12.83220 -12.77820 -12.73256 -12.63072 -12.55335 -12.47768 -12.38855 -11.95206 -11.80460 -11.40120 -10.84495 -10.77426 -10.54814 -10.45731 -10.23248 -9.49140 -7.96143 -6.22107 1.39154 1.41734 1.49889 2.43677 3.22197 3.83879 3.87337 3.95107 4.23502 4.52328 4.59100 4.61049 4.64120 4.66681 4.69397 4.72781 4.80479 4.90136 4.91809 5.05345 5.18414 5.21974 5.32110 5.36173 5.44589 5.50844 5.61613 5.65059 5.65646 5.70327 5.77356 5.86094 6.02317 6.19647 6.36443 6.86454 7.45910 7.72756 8.99949 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.041674 B = 0.009835 C = 0.009358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.721567 B = 2846.264355 C = 2991.457207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.253 3.747 3 O -0.559 6.559 4 C -0.566 4.566 5 H 0.047 0.953 6 C 0.034 3.966 7 N -0.886 5.886 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.270 1.270 12 C -0.092 4.092 13 H 0.041 0.959 14 C -0.097 4.097 15 C -0.083 4.083 16 C -0.101 4.101 17 C -0.124 4.124 18 C -0.078 4.078 19 C -0.111 4.111 20 C -0.105 4.105 21 H 0.033 0.967 22 H 0.033 0.967 23 H 0.054 0.946 24 H 0.347 0.653 25 H 0.255 0.745 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -1.409 11.165 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.214 3.786 3 O -0.365 6.365 4 C -0.604 4.604 5 H 0.065 0.935 6 C -0.168 4.168 7 N -0.524 5.524 8 Si 0.767 3.233 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.195 1.195 12 C -0.111 4.111 13 H 0.060 0.940 14 C -0.135 4.135 15 C -0.102 4.102 16 C -0.138 4.138 17 C -0.161 4.161 18 C -0.096 4.096 19 C -0.148 4.148 20 C -0.143 4.143 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.194 0.806 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.670 -1.167 11.043 11.695 hybrid contribution 0.570 -0.702 -1.379 1.649 sum 4.239 -1.869 9.663 10.717 Atomic orbital electron populations 1.21590 0.97349 0.98610 1.00185 1.18636 0.90555 0.79664 0.89733 1.86431 1.24004 1.29600 1.96434 1.21977 1.32828 1.12945 0.92636 0.93521 1.25647 0.94721 0.95106 1.01353 1.70137 1.36204 1.22949 1.23098 0.85857 0.78899 0.78434 0.80105 1.20554 1.21246 1.19489 1.21611 0.95715 0.98116 0.95685 0.94049 1.21436 0.95269 0.99488 0.97267 1.21049 0.99346 0.95247 0.94535 1.21427 0.95242 0.96141 1.01011 1.21772 0.96566 0.95896 1.01863 1.21016 0.98390 0.95896 0.94308 1.21552 0.96454 0.99677 0.97153 1.21482 0.95233 0.99816 0.97761 0.94807 0.94765 0.92731 0.80637 0.93546 0.93327 0.93191 0.90709 0.91451 0.93074 0.90483 0.93187 0.93089 0.92739 0.91407 0.92059 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.08 71.98 0.58 -5.33 16 2 C 0.25 12.16 0.29 -11.54 0.00 12.16 16 3 O -0.56 -27.19 8.53 -148.98 -1.27 -28.46 16 4 C -0.57 -30.31 7.45 25.60 0.19 -30.12 16 5 H 0.05 2.50 7.67 -2.91 -0.02 2.48 16 6 C 0.03 1.85 5.25 84.65 0.44 2.30 16 7 N -0.89 -51.13 10.88 21.44 0.23 -50.89 16 8 Si 0.94 43.52 29.54 68.60 2.03 45.54 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 C -0.09 -3.68 1.73 -10.79 -0.02 -3.70 16 13 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 14 C -0.10 -3.45 4.61 30.60 0.14 -3.31 16 15 C -0.08 -2.38 3.19 -10.82 -0.03 -2.41 16 16 C -0.10 -2.96 5.21 30.59 0.16 -2.81 16 17 C -0.12 -4.16 5.06 30.59 0.15 -4.01 16 18 C -0.08 -2.68 2.20 -10.79 -0.02 -2.70 16 19 C -0.11 -3.07 5.71 30.60 0.17 -2.89 16 20 C -0.11 -2.64 5.70 30.57 0.17 -2.47 16 21 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.03 1.53 6.18 -2.39 -0.01 1.52 16 23 H 0.05 3.03 6.08 -2.38 -0.01 3.02 16 24 H 0.35 15.84 5.68 -74.06 -0.42 15.42 16 25 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.97 5.67 -2.39 -0.01 1.95 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.60 6.99 -2.39 -0.02 1.58 16 31 H 0.08 3.13 5.20 -2.38 -0.01 3.12 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.87 6.33 -2.39 -0.02 1.85 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -58.23 264.24 3.56 -54.68 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.63 Total: 24.43 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 1.94 Total: -45.30 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.23 Total: -50.89 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.27 Total: -28.46 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -58.23 3.56 -54.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307395335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.399 kcal (2) G-P(sol) polarization free energy of solvation -58.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds