Wall clock time and date at job start Mon Mar 30 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 115.55165 * 2 1 4 4 C 1.53002 * 117.51468 * 214.30533 * 2 1 3 5 5 C 1.52992 * 117.49904 * 145.67404 * 2 1 3 6 6 H 1.09002 * 117.50180 * 215.02258 * 5 2 1 7 7 C 1.52999 * 117.50047 * 0.02562 * 5 2 1 8 8 C 1.53005 * 109.47854 * 293.76195 * 7 5 2 9 9 C 1.53094 * 109.48435 * 173.73695 * 7 5 2 10 10 C 1.53173 * 109.16215 * 182.40614 * 9 7 5 11 11 C 1.53182 * 109.03980 * 56.98232 * 10 9 7 12 12 C 1.53089 * 109.15841 * 303.01867 * 11 10 9 13 13 H 1.08997 * 109.48112 * 297.60704 * 12 11 10 14 14 C 1.50699 * 109.47779 * 177.59079 * 12 11 10 15 15 H 1.08004 * 120.00410 * 0.02562 * 14 12 11 16 16 C 1.37879 * 120.00301 * 180.02562 * 14 12 11 17 17 N 1.31520 * 119.99640 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00249 * 179.71999 * 16 14 12 19 19 H 1.48505 * 109.46893 * 60.00285 * 18 16 14 20 20 H 1.48503 * 109.47283 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47416 * 300.00418 * 18 16 14 22 22 O 1.42900 * 109.42721 * 57.60056 * 12 11 10 23 23 H 1.08994 * 109.47388 * 282.84918 * 1 2 3 24 24 H 1.09004 * 109.47128 * 42.84566 * 1 2 3 25 25 H 1.08994 * 109.47349 * 162.84413 * 1 2 3 26 26 H 1.09005 * 117.49741 * 145.03155 * 4 2 1 27 27 H 1.08998 * 117.50226 * 0.02562 * 4 2 1 28 28 H 1.09003 * 109.46708 * 307.69627 * 8 7 5 29 29 H 1.09001 * 109.47245 * 67.69348 * 8 7 5 30 30 H 1.09002 * 109.47214 * 187.69824 * 8 7 5 31 31 H 1.09001 * 109.51997 * 62.50131 * 9 7 5 32 32 H 1.09000 * 109.51993 * 302.31220 * 9 7 5 33 33 H 1.08999 * 109.54743 * 297.11251 * 10 9 7 34 34 H 1.09010 * 109.54070 * 176.84672 * 10 9 7 35 35 H 1.09000 * 109.52436 * 183.10906 * 11 10 9 36 36 H 1.09006 * 109.52161 * 62.91893 * 11 10 9 37 37 H 0.97000 * 120.00044 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2368 -1.1209 -0.7648 5 6 2.2364 -1.1207 0.7652 6 1 3.1712 -0.8746 1.2691 7 6 1.3589 -2.1561 1.4715 8 6 0.5896 -1.4819 2.6093 9 6 2.2412 -3.2698 2.0414 10 6 1.3513 -4.3321 2.6940 11 6 0.3537 -4.8547 1.6556 12 6 -0.4557 -3.6798 1.1007 13 1 -1.0278 -3.2197 1.9063 14 6 -1.3986 -4.1776 0.0357 15 1 -1.4192 -5.2268 -0.2198 16 6 -2.2350 -3.2938 -0.6126 17 7 -2.2095 -2.0160 -0.3019 18 14 -3.3981 -3.9096 -1.9382 19 1 -4.3217 -4.9170 -1.3572 20 1 -4.1841 -2.7700 -2.4756 21 1 -2.6137 -4.5316 -3.0351 22 8 0.4338 -2.7143 0.5362 23 1 -0.3634 0.2285 1.0019 24 1 -0.3633 0.7535 -0.6989 25 1 -0.3634 -0.9819 -0.3031 26 1 3.1721 -0.8749 -1.2678 27 1 1.6119 -1.8584 -1.2685 28 1 1.2870 -0.9405 3.2486 29 1 -0.1378 -0.7848 2.1931 30 1 0.0716 -2.2399 3.1969 31 1 2.9175 -2.8528 2.7876 32 1 2.8200 -3.7236 1.2369 33 1 0.8093 -3.8902 3.5301 34 1 1.9693 -5.1553 3.0525 35 1 -0.3198 -5.5712 2.1259 36 1 0.8944 -5.3405 0.8433 37 1 -2.7976 -1.3941 -0.7582 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307402962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:21 Heat of formation + Delta-G solvation = -32.002174 kcal Electronic energy + Delta-G solvation = -17106.866863 eV Core-core repulsion = 14656.647328 eV Total energy + Delta-G solvation = -2450.219536 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.24027 -36.18393 -33.01470 -32.17078 -30.61532 -27.91048 -27.25346 -25.02582 -22.94673 -21.75341 -20.52510 -19.04484 -17.95574 -16.54146 -15.27099 -14.78015 -14.39426 -14.19111 -13.88597 -13.42398 -12.66512 -12.49136 -12.06885 -11.88430 -11.71247 -11.05714 -10.95530 -10.90296 -10.79945 -10.62791 -10.49041 -10.37620 -10.23253 -10.09477 -9.82390 -9.50683 -9.18654 -8.82588 -8.68022 -8.29603 -7.67152 -5.96881 -4.10036 3.33471 3.38458 3.41329 4.43222 4.50848 4.99847 5.32399 5.47750 5.56834 5.69245 5.72157 5.76399 5.87541 6.09573 6.20438 6.22028 6.25167 6.37076 6.41855 6.47342 6.56417 6.65430 6.75434 6.83271 6.91193 6.95718 6.97795 7.04284 7.06920 7.14772 7.37227 7.60327 7.89093 8.20039 8.42452 8.83302 9.21729 9.59892 11.06794 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.012856 C = 0.009857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.736511 B = 2177.450695 C = 2839.823901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 H 0.079 0.921 4 C -0.167 4.167 5 C -0.144 4.144 6 H 0.093 0.907 7 C 0.143 3.857 8 C -0.176 4.176 9 C -0.135 4.135 10 C -0.122 4.122 11 C -0.144 4.144 12 C 0.217 3.783 13 H 0.019 0.981 14 C -0.523 4.523 15 H 0.060 0.940 16 C 0.079 3.921 17 N -0.855 5.855 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 O -0.341 6.341 23 H 0.047 0.953 24 H 0.026 0.974 25 H 0.145 0.855 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.468 1.411 3.354 7.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 H 0.097 0.903 4 C -0.204 4.204 5 C -0.162 4.162 6 H 0.112 0.888 7 C 0.102 3.898 8 C -0.233 4.233 9 C -0.173 4.173 10 C -0.159 4.159 11 C -0.182 4.182 12 C 0.161 3.839 13 H 0.036 0.964 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.126 4.126 17 N -0.492 5.492 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 O -0.260 6.260 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.163 0.837 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.377 1.639 3.123 7.288 hybrid contribution -0.364 -0.251 -0.360 0.570 sum 6.013 1.388 2.763 6.761 Atomic orbital electron populations 1.22061 0.90378 1.07693 0.99910 1.22313 0.97419 0.92071 1.04206 0.90284 1.22986 1.01294 1.02453 0.93643 1.22266 0.99441 1.00128 0.94345 0.88846 1.20482 0.89400 0.90358 0.89532 1.22553 1.00782 1.01340 0.98610 1.22086 0.98155 0.97408 0.99603 1.21666 0.97925 0.97606 0.98708 1.22259 0.97825 1.00683 0.97437 1.19677 0.86238 0.83605 0.94339 0.96365 1.20990 1.18201 0.94033 1.22789 0.92169 1.25003 0.96352 0.94884 0.96349 1.69851 1.36847 1.01729 1.40789 0.86728 0.80898 0.78315 0.82370 1.20366 1.21267 1.20264 1.88315 1.46436 1.57765 1.33524 0.93470 0.95540 0.83707 0.90816 0.87159 0.94155 0.90247 0.92730 0.93020 0.92052 0.92479 0.93543 0.92815 0.92721 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.77 16 2 C -0.14 -2.67 6.34 -90.62 -0.57 -3.24 16 3 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 4 C -0.17 -3.14 9.57 -26.73 -0.26 -3.39 16 5 C -0.14 -2.64 5.06 -90.62 -0.46 -3.10 16 6 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 7 C 0.14 2.85 0.66 -90.57 -0.06 2.79 16 8 C -0.18 -3.41 7.63 37.16 0.28 -3.13 16 9 C -0.13 -2.42 4.92 -26.59 -0.13 -2.55 16 10 C -0.12 -2.19 5.72 -26.55 -0.15 -2.34 16 11 C -0.14 -3.05 5.36 -26.59 -0.14 -3.19 16 12 C 0.22 5.36 2.18 -27.84 -0.06 5.30 16 13 H 0.02 0.50 6.52 -51.93 -0.34 0.16 16 14 C -0.52 -14.16 8.79 -34.44 -0.30 -14.46 16 15 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 16 C 0.08 2.13 5.40 -17.82 -0.10 2.03 16 17 N -0.86 -23.19 10.31 55.43 0.57 -22.62 16 18 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 O -0.34 -8.15 5.38 -35.23 -0.19 -8.34 16 23 H 0.05 1.01 5.70 -51.93 -0.30 0.71 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.15 3.57 3.12 -51.93 -0.16 3.40 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.11 2.41 7.12 -51.93 -0.37 2.04 16 28 H 0.04 0.68 8.13 -51.93 -0.42 0.25 16 29 H 0.08 1.68 4.84 -51.93 -0.25 1.43 16 30 H 0.05 1.07 5.04 -51.93 -0.26 0.81 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.01 6.45 -51.93 -0.34 0.67 16 34 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 272.97 15.07 4.11 4.11 Total: -1.00 -26.72 272.97 -7.94 -34.66 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.78 Total: 4.40 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -1.63 Total: -28.06 kcal Atomic # 7 Polarization: -23.19 SS G_CDS: 0.57 Total: -22.62 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.19 Total: -8.34 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.72 -7.94 -34.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307402962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.656 kcal (2) G-P(sol) polarization free energy of solvation -26.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds