Wall clock time and date at job start Mon Mar 30 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 112.84525 * 2 1 4 4 C 1.53852 * 113.67778 * 228.76306 * 2 1 3 5 5 C 1.53389 * 86.97997 * 220.26435 * 4 2 1 6 6 C 1.52811 * 113.48219 * 139.74021 * 5 4 2 7 7 C 1.53319 * 108.92004 * 185.08311 * 6 5 4 8 8 C 1.53163 * 108.98209 * 305.10930 * 7 6 5 9 9 C 1.53054 * 109.39591 * 58.61340 * 8 7 6 10 10 H 1.09000 * 109.47831 * 60.68461 * 9 8 7 11 11 C 1.50701 * 109.47304 * 180.69870 * 9 8 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99694 * 180.26758 * 11 9 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 9 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 9 16 16 H 1.48504 * 109.47209 * 89.99886 * 15 13 11 17 17 H 1.48501 * 109.47358 * 209.99377 * 15 13 11 18 18 H 1.48496 * 109.47341 * 329.99989 * 15 13 11 19 19 O 1.42573 * 113.62246 * 270.55389 * 5 4 2 20 20 C 1.53414 * 87.45718 * 25.23293 * 5 4 2 21 21 H 1.09005 * 113.63170 * 220.24977 * 20 5 4 22 22 C 1.52997 * 113.63504 * 89.28814 * 20 5 4 23 23 H 1.09001 * 109.46999 * 288.83758 * 1 2 3 24 24 H 1.09007 * 109.46719 * 48.83238 * 1 2 3 25 25 H 1.08997 * 109.47144 * 168.82879 * 1 2 3 26 26 H 1.09001 * 113.63225 * 105.74031 * 4 2 1 27 27 H 1.09003 * 113.63003 * 334.78704 * 4 2 1 28 28 H 1.09003 * 109.56766 * 304.91336 * 6 5 4 29 29 H 1.09005 * 109.56500 * 65.25740 * 6 5 4 30 30 H 1.09002 * 109.54750 * 64.95402 * 7 6 5 31 31 H 1.08994 * 109.55637 * 185.14929 * 7 6 5 32 32 H 1.08987 * 109.47810 * 298.63452 * 8 7 6 33 33 H 1.09002 * 109.48208 * 178.58850 * 8 7 6 34 34 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47021 * 60.00592 * 22 20 5 36 36 H 1.09009 * 109.46980 * 180.02562 * 22 20 5 37 37 H 1.08998 * 109.47070 * 299.99882 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0044 0.0000 4 6 2.1479 -0.9288 -1.0596 5 6 3.1859 -1.3151 0.0017 6 6 3.5301 -2.8039 0.0032 7 6 4.4722 -3.0951 1.1772 8 6 5.6896 -2.1708 1.0802 9 6 5.2240 -0.7130 1.1029 10 1 4.7013 -0.5129 2.0383 11 6 6.4192 0.1980 0.9903 12 1 7.4116 -0.2207 0.9110 13 6 6.2462 1.5658 0.9947 14 7 5.0378 2.0756 1.0915 15 14 7.7285 2.6950 0.8630 16 1 8.0051 2.9840 -0.5671 17 1 7.4483 3.9653 1.5793 18 1 8.9104 2.0336 1.4719 19 8 4.3401 -0.4781 0.0031 20 6 2.1461 -0.9281 1.0612 21 1 2.5683 -0.3967 1.9142 22 6 1.2302 -2.0827 1.4722 23 1 -0.3633 0.3318 0.9726 24 1 -0.3633 0.6765 -0.7737 25 1 -0.3633 -1.0082 -0.1991 26 1 2.5715 -0.3981 -1.9122 27 1 1.4959 -1.7516 -1.3529 28 1 2.6174 -3.3895 0.1137 29 1 4.0225 -3.0656 -0.9334 30 1 3.9506 -2.9140 2.1170 31 1 4.7972 -4.1346 1.1350 32 1 6.2224 -2.3679 0.1501 33 1 6.3531 -2.3537 1.9254 34 1 4.9162 3.0379 1.0949 35 1 1.8305 -2.8927 1.8866 36 1 0.5213 -1.7344 2.2235 37 1 0.6861 -2.4433 0.5993 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307407615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:01 Heat of formation + Delta-G solvation = -60.997799 kcal Electronic energy + Delta-G solvation = -16803.723921 eV Core-core repulsion = 14352.247041 eV Total energy + Delta-G solvation = -2451.476880 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.54752 -37.79955 -34.67678 -34.20682 -31.60711 -30.23727 -28.92806 -27.05942 -24.61982 -24.05711 -22.60321 -20.60721 -18.81697 -18.61394 -17.20695 -16.71190 -16.10731 -15.88463 -15.31605 -15.06582 -14.63327 -14.26641 -13.70464 -13.56560 -13.30931 -13.04006 -12.88065 -12.86222 -12.75557 -12.61370 -12.48475 -12.13965 -11.87178 -11.70707 -11.47524 -11.16197 -11.09300 -10.79313 -10.70155 -10.30935 -9.47963 -8.14572 -6.35250 1.37669 1.39423 1.49670 2.38947 3.00739 3.52128 3.72232 3.79570 3.93451 4.15478 4.21734 4.34747 4.39647 4.54673 4.60693 4.65811 4.76496 4.84712 4.89714 4.89892 4.95761 5.05535 5.11481 5.14550 5.20251 5.23839 5.25707 5.31898 5.36163 5.44742 5.55282 5.73190 5.77251 5.88333 6.23437 6.68478 7.30177 7.42981 8.92278 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.030322 B = 0.010304 C = 0.008442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.187104 B = 2716.685133 C = 3316.116576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 H 0.046 0.954 4 C -0.113 4.113 5 C 0.074 3.926 6 C -0.127 4.127 7 C -0.113 4.113 8 C -0.140 4.140 9 C 0.224 3.776 10 H -0.023 1.023 11 C -0.557 4.557 12 H 0.062 0.938 13 C 0.026 3.974 14 N -0.892 5.892 15 Si 0.959 3.041 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.262 1.262 19 O -0.369 6.369 20 C -0.127 4.127 21 H 0.029 0.971 22 C -0.120 4.120 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 -8.932 -1.417 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.065 0.935 4 C -0.150 4.150 5 C 0.033 3.967 6 C -0.165 4.165 7 C -0.151 4.151 8 C -0.177 4.177 9 C 0.168 3.832 10 H -0.005 1.005 11 C -0.594 4.594 12 H 0.080 0.920 13 C -0.177 4.177 14 N -0.528 5.528 15 Si 0.783 3.217 16 H -0.202 1.202 17 H -0.205 1.205 18 H -0.187 1.187 19 O -0.289 6.289 20 C -0.146 4.146 21 H 0.048 0.952 22 C -0.177 4.177 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.355 -8.639 -1.538 12.116 hybrid contribution 1.079 1.137 0.273 1.591 sum -7.275 -7.502 -1.265 10.527 Atomic orbital electron populations 1.21671 0.92613 1.02749 1.01457 1.22256 0.96458 0.96880 0.96532 0.93518 1.23043 0.96449 0.99690 0.95849 1.22372 0.86820 0.90674 0.96838 1.22010 1.00538 0.95502 0.98402 1.21592 0.95764 0.99252 0.98460 1.22105 0.98195 0.96774 1.00675 1.19429 0.87603 0.91117 0.85061 1.00506 1.21472 0.92765 0.92002 1.53207 0.92024 1.25914 0.98544 0.99911 0.93336 1.70191 1.22779 1.11936 1.47931 0.85567 0.79724 0.78106 0.78268 1.20204 1.20489 1.18652 1.88198 1.32293 1.59513 1.48851 1.22845 0.97615 0.97836 0.96332 0.95212 1.21596 0.98195 0.96029 1.01858 0.92842 0.92573 0.90293 0.93413 0.86335 0.88280 0.92261 0.92609 0.90051 0.93257 0.92413 0.93178 0.91931 0.92083 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.88 71.98 0.64 -2.76 16 2 C -0.10 -3.78 4.23 -10.22 -0.04 -3.82 16 3 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.11 -3.95 6.67 31.01 0.21 -3.74 16 5 C 0.07 2.99 0.98 -10.59 -0.01 2.98 16 6 C -0.13 -4.20 4.72 30.64 0.14 -4.05 16 7 C -0.11 -3.90 5.82 30.76 0.18 -3.72 16 8 C -0.14 -6.12 5.30 30.67 0.16 -5.96 16 9 C 0.22 12.18 2.38 29.87 0.07 12.25 16 10 H -0.02 -1.36 7.21 -2.39 -0.02 -1.38 16 11 C -0.56 -32.97 8.79 25.60 0.23 -32.74 16 12 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 13 C 0.03 1.51 5.40 84.65 0.46 1.97 16 14 N -0.89 -55.03 12.84 21.45 0.28 -54.76 16 15 Si 0.96 45.44 29.54 68.60 2.03 47.46 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 19 O -0.37 -19.98 9.48 -148.98 -1.41 -21.39 16 20 C -0.13 -4.82 3.87 -10.37 -0.04 -4.86 16 21 H 0.03 1.40 7.26 -2.38 -0.02 1.38 16 22 C -0.12 -3.19 7.22 71.98 0.52 -2.67 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.08 1.67 6.51 -2.39 -0.02 1.66 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.12 3.11 7.46 -2.39 -0.02 3.09 16 28 H 0.10 2.55 6.22 -2.39 -0.01 2.53 16 29 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.06 1.92 7.24 -2.39 -0.02 1.90 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.06 1.59 6.15 -2.39 -0.01 1.57 16 36 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.08 1.71 6.00 -2.39 -0.01 1.69 16 Total: -1.00 -68.41 280.85 4.42 -63.99 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.02 Total: 11.82 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 2.51 Total: -47.12 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.28 Total: -54.76 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.41 Total: -21.39 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.41 4.42 -63.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307407615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.992 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds