Wall clock time and date at job start Mon Mar 30 2020 03:21:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00321 * 2 1
4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1
5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1
6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1
7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1
9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1
10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2
11 11 C 1.48528 * 110.99841 * 285.40470 * 10 9 7
12 12 C 1.54325 * 104.67249 * 200.80476 * 11 10 9
13 13 H 1.09000 * 112.55137 * 262.02563 * 12 11 10
14 14 C 1.54154 * 108.86542 * 137.49486 * 12 11 10
15 15 C 1.54846 * 104.32190 * 271.12383 * 14 12 11
16 16 C 1.54840 * 102.73611 * 321.81495 * 15 14 12
17 17 C 1.54167 * 104.32324 * 38.18475 * 16 15 14
18 18 C 1.52998 * 112.50871 * 213.41662 * 17 16 15
19 19 N 1.46899 * 109.47684 * 298.12405 * 18 17 16
20 20 C 1.48536 * 110.99860 * 169.99769 * 10 9 7
21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3
22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2
23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2
24 24 H 1.08994 * 110.39787 * 319.60042 * 11 10 9
25 25 H 1.09001 * 110.39297 * 82.00877 * 11 10 9
26 26 H 1.09001 * 110.46739 * 29.82972 * 14 12 11
27 27 H 1.08996 * 110.46351 * 152.41685 * 14 12 11
28 28 H 1.09004 * 110.75991 * 80.12671 * 15 14 12
29 29 H 1.09006 * 110.75708 * 203.31825 * 15 14 12
30 30 H 1.09003 * 110.46253 * 279.47465 * 16 15 14
31 31 H 1.09004 * 110.46324 * 156.89810 * 16 15 14
32 32 H 1.09005 * 109.47360 * 58.12502 * 18 17 16
33 33 H 1.09005 * 109.46675 * 178.12531 * 18 17 16
34 34 H 1.00901 * 110.99796 * 56.04189 * 19 18 17
35 35 H 1.00898 * 111.00324 * 180.02562 * 19 18 17
36 36 H 1.08998 * 110.39740 * 277.99012 * 20 10 9
37 37 H 1.09002 * 110.39248 * 40.39807 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1030 1.6963 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 7 2.2057 -3.6158 -0.0005
11 6 2.8315 -3.7810 -1.3374
12 6 3.3533 -5.2333 -1.3479
13 1 4.4152 -5.2977 -1.1106
14 6 3.0328 -5.8681 -2.7156
15 6 1.6215 -6.4786 -2.5333
16 6 1.6726 -7.0309 -1.0877
17 6 2.4824 -5.9777 -0.3054
18 6 3.3297 -6.5982 0.8071
19 7 2.4508 -7.2559 1.7833
20 6 1.5135 -4.9077 0.2403
21 1 -0.4850 0.8401 0.0004
22 1 0.6247 -2.5571 0.8897
23 1 0.6240 -2.5568 -0.8903
24 1 2.0907 -3.6378 -2.1239
25 1 3.6570 -3.0798 -1.4595
26 1 3.0208 -5.1069 -3.4957
27 1 3.7571 -6.6472 -2.9532
28 1 0.8534 -5.7107 -2.6266
29 1 1.4522 -7.2814 -3.2509
30 1 2.1802 -7.9952 -1.0659
31 1 0.6664 -7.1195 -0.6778
32 1 4.0106 -7.3335 0.3782
33 1 3.9048 -5.8171 1.3044
34 1 1.8605 -7.9403 1.3348
35 1 2.9871 -7.6735 2.5290
36 1 1.3458 -5.0558 1.3071
37 1 0.5684 -4.9391 -0.3018
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307625283.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:36
Heat of formation + Delta-G solvation = -9.058530 kcal
Electronic energy + Delta-G solvation = -16240.405787 eV
Core-core repulsion = 13823.473914 eV
Total energy + Delta-G solvation = -2416.931873 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.94724 -35.05158 -34.08126 -32.41378 -29.71919 -29.19720 -26.48432 -25.10670
-23.73742 -22.44528 -20.21598 -19.88961 -18.26505 -16.31566 -15.98805 -15.08889
-14.70311 -14.62121 -14.12647 -13.91931 -13.71492 -12.94268 -12.83205 -12.20638
-11.89866 -11.82811 -11.36485 -10.98450 -10.86780 -10.75139 -10.59701 -10.49586
-10.37956 -10.17680 -10.09074 -10.01578 -9.63762 -9.10984 -8.51011 -8.35389
-7.24035 -5.95673 -3.96478 3.37764 3.41179 3.44717 4.47716 4.55084
4.71015 4.83925 5.00609 5.34236 5.39835 5.42321 5.51944 5.56978
5.59119 5.72855 5.82980 5.86995 5.90184 6.03874 6.10834 6.23674
6.31666 6.40840 6.49525 6.59626 6.72094 6.76682 6.84158 7.25394
7.29845 7.39244 7.54444 7.87311 8.11431 8.28687 8.62098 9.11339
9.67262 11.15356
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.036939 B = 0.007188 C = 0.006786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 757.834033 B = 3894.393585 C = 4125.374824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.901 5.901
2 C 0.053 3.947
3 Si 0.898 3.102
4 H -0.288 1.288
5 H -0.276 1.276
6 H -0.278 1.278
7 C -0.503 4.503
8 H 0.061 0.939
9 C 0.184 3.816
10 N -0.507 5.507
11 C 0.052 3.948
12 C -0.091 4.091
13 H 0.077 0.923
14 C -0.119 4.119
15 C -0.124 4.124
16 C -0.113 4.113
17 C -0.060 4.060
18 C 0.087 3.913
19 N -0.846 5.846
20 C 0.049 3.951
21 H 0.261 0.739
22 H 0.028 0.972
23 H -0.008 1.008
24 H 0.036 0.964
25 H 0.072 0.928
26 H 0.066 0.934
27 H 0.059 0.941
28 H 0.067 0.933
29 H 0.061 0.939
30 H 0.056 0.944
31 H 0.066 0.934
32 H 0.018 0.982
33 H 0.079 0.921
34 H 0.335 0.665
35 H 0.337 0.663
36 H 0.084 0.916
37 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.075 -15.000 -2.810 16.082
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.147 4.147
3 Si 0.726 3.274
4 H -0.214 1.214
5 H -0.202 1.202
6 H -0.204 1.204
7 C -0.542 4.542
8 H 0.079 0.921
9 C 0.058 3.942
10 N -0.231 5.231
11 C -0.076 4.076
12 C -0.110 4.110
13 H 0.095 0.905
14 C -0.156 4.156
15 C -0.161 4.161
16 C -0.151 4.151
17 C -0.061 4.061
18 C -0.044 4.044
19 N -0.375 5.375
20 C -0.079 4.079
21 H 0.070 0.930
22 H 0.046 0.954
23 H 0.009 0.991
24 H 0.054 0.946
25 H 0.090 0.910
26 H 0.085 0.915
27 H 0.077 0.923
28 H 0.086 0.914
29 H 0.079 0.921
30 H 0.075 0.925
31 H 0.085 0.915
32 H 0.036 0.964
33 H 0.098 0.902
34 H 0.147 0.853
35 H 0.149 0.851
36 H 0.102 0.898
37 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges 4.999 -13.989 -2.258 15.026
hybrid contribution 0.208 -0.014 -0.934 0.957
sum 5.207 -14.003 -3.192 15.277
Atomic orbital electron populations
1.69957 1.06042 1.26737 1.51309 1.24999 0.94861 0.99262 0.95613
0.86567 0.79429 0.82838 0.78599 1.21398 1.20187 1.20361 1.21116
0.93449 0.89966 1.49623 0.92063 1.19838 0.90284 0.88033 0.96043
1.65465 1.29938 1.02435 1.25273 1.22984 0.98829 0.93791 0.92008
1.22560 0.99097 0.95837 0.93535 0.90474 1.22400 0.96476 0.99498
0.97270 1.22457 0.97611 0.99835 0.96238 1.22393 0.99915 0.97438
0.95343 1.21865 0.95319 0.94954 0.93932 1.21654 0.93338 0.97084
0.92301 1.58616 1.26447 1.37935 1.14480 1.23091 0.94072 0.89521
1.01264 0.92970 0.95363 0.99068 0.94587 0.90986 0.91536 0.92255
0.91449 0.92069 0.92530 0.91529 0.96363 0.90232 0.85257 0.85137
0.89766 0.95353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16
2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
3 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16
4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
7 C -0.50 -14.68 8.97 -34.44 -0.31 -14.99 16
8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16
9 C 0.18 5.02 4.59 -4.98 -0.02 5.00 16
10 N -0.51 -11.51 5.33 -231.53 -1.23 -12.74 16
11 C 0.05 1.04 5.50 -2.23 -0.01 1.03 16
12 C -0.09 -1.41 3.58 -88.32 -0.32 -1.72 16
13 H 0.08 1.14 7.88 -51.93 -0.41 0.73 16
14 C -0.12 -1.56 6.10 -25.15 -0.15 -1.72 16
15 C -0.12 -1.60 6.82 -24.79 -0.17 -1.77 16
16 C -0.11 -1.44 4.77 -25.15 -0.12 -1.56 16
17 C -0.06 -0.90 0.74 -152.21 -0.11 -1.01 16
18 C 0.09 1.16 5.77 -3.83 -0.02 1.14 16
19 N -0.85 -10.11 8.90 -10.37 -0.09 -10.21 16
20 C 0.05 0.94 5.35 -2.23 -0.01 0.93 16
21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
22 H 0.03 0.83 8.08 -51.92 -0.42 0.41 16
23 H -0.01 -0.25 7.77 -51.93 -0.40 -0.65 16
24 H 0.04 0.75 7.22 -51.93 -0.38 0.38 16
25 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16
26 H 0.07 0.89 7.74 -51.93 -0.40 0.49 16
27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.06 0.63 7.98 -51.93 -0.41 0.21 16
31 H 0.07 0.86 7.74 -51.93 -0.40 0.45 16
32 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16
33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16
34 H 0.34 3.53 8.13 -39.29 -0.32 3.21 16
35 H 0.34 3.32 9.08 -39.29 -0.36 2.96 16
36 H 0.08 1.69 7.36 -51.93 -0.38 1.31 16
37 H 0.03 0.57 7.47 -51.93 -0.39 0.18 16
LS Contribution 287.45 15.07 4.33 4.33
Total: -1.00 -30.78 287.45 -8.98 -39.76
By element:
Atomic # 1 Polarization: 7.98 SS G_CDS: -6.35 Total: 1.63 kcal
Atomic # 6 Polarization: -11.85 SS G_CDS: -1.35 Total: -13.20 kcal
Atomic # 7 Polarization: -49.15 SS G_CDS: -0.59 Total: -49.74 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal
Total LS contribution 4.33 Total: 4.33 kcal
Total: -30.78 -8.98 -39.76 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307625283.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.703 kcal
(2) G-P(sol) polarization free energy of solvation -30.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.081 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds