Wall clock time and date at job start Mon Mar 30 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.48528 * 110.99841 * 285.40470 * 10 9 7 12 12 C 1.54325 * 104.67249 * 200.80476 * 11 10 9 13 13 H 1.09000 * 112.55137 * 262.02563 * 12 11 10 14 14 C 1.54154 * 108.86542 * 137.49486 * 12 11 10 15 15 C 1.54846 * 104.32190 * 271.12383 * 14 12 11 16 16 C 1.54840 * 102.73611 * 321.81495 * 15 14 12 17 17 C 1.54167 * 104.32324 * 38.18475 * 16 15 14 18 18 C 1.52998 * 112.50871 * 213.41662 * 17 16 15 19 19 N 1.46899 * 109.47684 * 298.12405 * 18 17 16 20 20 C 1.48536 * 110.99860 * 169.99769 * 10 9 7 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.08994 * 110.39787 * 319.60042 * 11 10 9 25 25 H 1.09001 * 110.39297 * 82.00877 * 11 10 9 26 26 H 1.09001 * 110.46739 * 29.82972 * 14 12 11 27 27 H 1.08996 * 110.46351 * 152.41685 * 14 12 11 28 28 H 1.09004 * 110.75991 * 80.12671 * 15 14 12 29 29 H 1.09006 * 110.75708 * 203.31825 * 15 14 12 30 30 H 1.09003 * 110.46253 * 279.47465 * 16 15 14 31 31 H 1.09004 * 110.46324 * 156.89810 * 16 15 14 32 32 H 1.09005 * 109.47360 * 58.12502 * 18 17 16 33 33 H 1.09005 * 109.46675 * 178.12531 * 18 17 16 34 34 H 1.00901 * 110.99796 * 56.04189 * 19 18 17 35 35 H 1.00898 * 111.00324 * 180.02562 * 19 18 17 36 36 H 1.08998 * 110.39740 * 277.99012 * 20 10 9 37 37 H 1.09002 * 110.39248 * 40.39807 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.8315 -3.7810 -1.3374 12 6 3.3533 -5.2333 -1.3479 13 1 4.4152 -5.2977 -1.1106 14 6 3.0328 -5.8681 -2.7156 15 6 1.6215 -6.4786 -2.5333 16 6 1.6726 -7.0309 -1.0877 17 6 2.4824 -5.9777 -0.3054 18 6 3.3297 -6.5982 0.8071 19 7 2.4508 -7.2559 1.7833 20 6 1.5135 -4.9077 0.2403 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.0907 -3.6378 -2.1239 25 1 3.6570 -3.0798 -1.4595 26 1 3.0208 -5.1069 -3.4957 27 1 3.7571 -6.6472 -2.9532 28 1 0.8534 -5.7107 -2.6266 29 1 1.4522 -7.2814 -3.2509 30 1 2.1802 -7.9952 -1.0659 31 1 0.6664 -7.1195 -0.6778 32 1 4.0106 -7.3335 0.3782 33 1 3.9048 -5.8171 1.3044 34 1 1.8605 -7.9403 1.3348 35 1 2.9871 -7.6735 2.5290 36 1 1.3458 -5.0558 1.3071 37 1 0.5684 -4.9391 -0.3018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307625283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:36 Heat of formation + Delta-G solvation = -9.058530 kcal Electronic energy + Delta-G solvation = -16240.405787 eV Core-core repulsion = 13823.473914 eV Total energy + Delta-G solvation = -2416.931873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94724 -35.05158 -34.08126 -32.41378 -29.71919 -29.19720 -26.48432 -25.10670 -23.73742 -22.44528 -20.21598 -19.88961 -18.26505 -16.31566 -15.98805 -15.08889 -14.70311 -14.62121 -14.12647 -13.91931 -13.71492 -12.94268 -12.83205 -12.20638 -11.89866 -11.82811 -11.36485 -10.98450 -10.86780 -10.75139 -10.59701 -10.49586 -10.37956 -10.17680 -10.09074 -10.01578 -9.63762 -9.10984 -8.51011 -8.35389 -7.24035 -5.95673 -3.96478 3.37764 3.41179 3.44717 4.47716 4.55084 4.71015 4.83925 5.00609 5.34236 5.39835 5.42321 5.51944 5.56978 5.59119 5.72855 5.82980 5.86995 5.90184 6.03874 6.10834 6.23674 6.31666 6.40840 6.49525 6.59626 6.72094 6.76682 6.84158 7.25394 7.29845 7.39244 7.54444 7.87311 8.11431 8.28687 8.62098 9.11339 9.67262 11.15356 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.036939 B = 0.007188 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.834033 B = 3894.393585 C = 4125.374824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.184 3.816 10 N -0.507 5.507 11 C 0.052 3.948 12 C -0.091 4.091 13 H 0.077 0.923 14 C -0.119 4.119 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.060 4.060 18 C 0.087 3.913 19 N -0.846 5.846 20 C 0.049 3.951 21 H 0.261 0.739 22 H 0.028 0.972 23 H -0.008 1.008 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.079 0.921 34 H 0.335 0.665 35 H 0.337 0.663 36 H 0.084 0.916 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.075 -15.000 -2.810 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.058 3.942 10 N -0.231 5.231 11 C -0.076 4.076 12 C -0.110 4.110 13 H 0.095 0.905 14 C -0.156 4.156 15 C -0.161 4.161 16 C -0.151 4.151 17 C -0.061 4.061 18 C -0.044 4.044 19 N -0.375 5.375 20 C -0.079 4.079 21 H 0.070 0.930 22 H 0.046 0.954 23 H 0.009 0.991 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.102 0.898 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.999 -13.989 -2.258 15.026 hybrid contribution 0.208 -0.014 -0.934 0.957 sum 5.207 -14.003 -3.192 15.277 Atomic orbital electron populations 1.69957 1.06042 1.26737 1.51309 1.24999 0.94861 0.99262 0.95613 0.86567 0.79429 0.82838 0.78599 1.21398 1.20187 1.20361 1.21116 0.93449 0.89966 1.49623 0.92063 1.19838 0.90284 0.88033 0.96043 1.65465 1.29938 1.02435 1.25273 1.22984 0.98829 0.93791 0.92008 1.22560 0.99097 0.95837 0.93535 0.90474 1.22400 0.96476 0.99498 0.97270 1.22457 0.97611 0.99835 0.96238 1.22393 0.99915 0.97438 0.95343 1.21865 0.95319 0.94954 0.93932 1.21654 0.93338 0.97084 0.92301 1.58616 1.26447 1.37935 1.14480 1.23091 0.94072 0.89521 1.01264 0.92970 0.95363 0.99068 0.94587 0.90986 0.91536 0.92255 0.91449 0.92069 0.92530 0.91529 0.96363 0.90232 0.85257 0.85137 0.89766 0.95353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.50 -14.68 8.97 -34.44 -0.31 -14.99 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.18 5.02 4.59 -4.98 -0.02 5.00 16 10 N -0.51 -11.51 5.33 -231.53 -1.23 -12.74 16 11 C 0.05 1.04 5.50 -2.23 -0.01 1.03 16 12 C -0.09 -1.41 3.58 -88.32 -0.32 -1.72 16 13 H 0.08 1.14 7.88 -51.93 -0.41 0.73 16 14 C -0.12 -1.56 6.10 -25.15 -0.15 -1.72 16 15 C -0.12 -1.60 6.82 -24.79 -0.17 -1.77 16 16 C -0.11 -1.44 4.77 -25.15 -0.12 -1.56 16 17 C -0.06 -0.90 0.74 -152.21 -0.11 -1.01 16 18 C 0.09 1.16 5.77 -3.83 -0.02 1.14 16 19 N -0.85 -10.11 8.90 -10.37 -0.09 -10.21 16 20 C 0.05 0.94 5.35 -2.23 -0.01 0.93 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.03 0.83 8.08 -51.92 -0.42 0.41 16 23 H -0.01 -0.25 7.77 -51.93 -0.40 -0.65 16 24 H 0.04 0.75 7.22 -51.93 -0.38 0.38 16 25 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.07 0.89 7.74 -51.93 -0.40 0.49 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.63 7.98 -51.93 -0.41 0.21 16 31 H 0.07 0.86 7.74 -51.93 -0.40 0.45 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.34 3.53 8.13 -39.29 -0.32 3.21 16 35 H 0.34 3.32 9.08 -39.29 -0.36 2.96 16 36 H 0.08 1.69 7.36 -51.93 -0.38 1.31 16 37 H 0.03 0.57 7.47 -51.93 -0.39 0.18 16 LS Contribution 287.45 15.07 4.33 4.33 Total: -1.00 -30.78 287.45 -8.98 -39.76 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.35 Total: 1.63 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.35 Total: -13.20 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.59 Total: -49.74 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.78 -8.98 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307625283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.703 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds