Wall clock time and date at job start Mon Mar 30 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.48528 * 110.99841 * 285.40470 * 10 9 7 12 12 C 1.54325 * 104.67249 * 200.80476 * 11 10 9 13 13 H 1.09000 * 112.55137 * 262.02563 * 12 11 10 14 14 C 1.54154 * 108.86542 * 137.49486 * 12 11 10 15 15 C 1.54846 * 104.32190 * 271.12383 * 14 12 11 16 16 C 1.54840 * 102.73611 * 321.81495 * 15 14 12 17 17 C 1.54167 * 104.32324 * 38.18475 * 16 15 14 18 18 C 1.52998 * 112.50871 * 213.41662 * 17 16 15 19 19 N 1.46899 * 109.47684 * 298.12405 * 18 17 16 20 20 C 1.48536 * 110.99860 * 169.99769 * 10 9 7 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.08994 * 110.39787 * 319.60042 * 11 10 9 25 25 H 1.09001 * 110.39297 * 82.00877 * 11 10 9 26 26 H 1.09001 * 110.46739 * 29.82972 * 14 12 11 27 27 H 1.08996 * 110.46351 * 152.41685 * 14 12 11 28 28 H 1.09004 * 110.75991 * 80.12671 * 15 14 12 29 29 H 1.09006 * 110.75708 * 203.31825 * 15 14 12 30 30 H 1.09003 * 110.46253 * 279.47465 * 16 15 14 31 31 H 1.09004 * 110.46324 * 156.89810 * 16 15 14 32 32 H 1.09005 * 109.47360 * 58.12502 * 18 17 16 33 33 H 1.09005 * 109.46675 * 178.12531 * 18 17 16 34 34 H 1.00901 * 110.99796 * 56.04189 * 19 18 17 35 35 H 1.00898 * 111.00324 * 180.02562 * 19 18 17 36 36 H 1.08998 * 110.39740 * 277.99012 * 20 10 9 37 37 H 1.09002 * 110.39248 * 40.39807 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.8315 -3.7810 -1.3374 12 6 3.3533 -5.2333 -1.3479 13 1 4.4152 -5.2977 -1.1106 14 6 3.0328 -5.8681 -2.7156 15 6 1.6215 -6.4786 -2.5333 16 6 1.6726 -7.0309 -1.0877 17 6 2.4824 -5.9777 -0.3054 18 6 3.3297 -6.5982 0.8071 19 7 2.4508 -7.2559 1.7833 20 6 1.5135 -4.9077 0.2403 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.0907 -3.6378 -2.1239 25 1 3.6570 -3.0798 -1.4595 26 1 3.0208 -5.1069 -3.4957 27 1 3.7571 -6.6472 -2.9532 28 1 0.8534 -5.7107 -2.6266 29 1 1.4522 -7.2814 -3.2509 30 1 2.1802 -7.9952 -1.0659 31 1 0.6664 -7.1195 -0.6778 32 1 4.0106 -7.3335 0.3782 33 1 3.9048 -5.8171 1.3044 34 1 1.8605 -7.9403 1.3348 35 1 2.9871 -7.6735 2.5290 36 1 1.3458 -5.0558 1.3071 37 1 0.5684 -4.9391 -0.3018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307625283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:35 Heat of formation + Delta-G solvation = -31.990954 kcal Electronic energy + Delta-G solvation = -16241.400212 eV Core-core repulsion = 13823.473914 eV Total energy + Delta-G solvation = -2417.926298 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.29369 -36.74630 -35.14855 -34.54579 -31.02843 -30.73366 -28.31699 -26.45636 -25.34672 -23.97578 -21.96864 -21.10063 -19.56596 -18.47697 -17.17314 -16.79097 -16.16433 -15.86375 -15.66790 -15.34609 -15.11213 -14.62322 -14.13619 -13.81204 -13.52404 -13.42029 -12.97406 -12.81640 -12.51042 -12.42678 -12.07168 -11.89651 -11.70947 -11.58666 -11.47223 -11.37685 -11.30210 -11.14217 -10.62650 -9.44212 -9.14468 -8.22765 -6.34062 1.37965 1.42460 1.50503 2.38584 3.08618 3.36219 3.44232 3.63366 3.84230 4.01010 4.26693 4.31183 4.35985 4.43052 4.47596 4.58760 4.73154 4.76959 4.80908 4.93172 4.99438 5.05259 5.07940 5.11613 5.18795 5.23185 5.29531 5.39815 5.45535 5.52183 5.62372 6.00961 6.27456 6.37296 6.53492 6.75027 6.81530 7.35871 8.88550 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.036939 B = 0.007188 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.834033 B = 3894.393585 C = 4125.374824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.202 3.798 10 N -0.519 5.519 11 C 0.051 3.949 12 C -0.085 4.085 13 H 0.093 0.907 14 C -0.113 4.113 15 C -0.125 4.125 16 C -0.105 4.105 17 C -0.052 4.052 18 C 0.093 3.907 19 N -0.857 5.857 20 C 0.050 3.950 21 H 0.265 0.735 22 H -0.005 1.005 23 H -0.040 1.040 24 H 0.018 0.982 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.346 0.654 35 H 0.350 0.650 36 H 0.072 0.928 37 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.888 -16.505 -3.369 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.078 0.922 9 C 0.075 3.925 10 N -0.243 5.243 11 C -0.077 4.077 12 C -0.104 4.104 13 H 0.111 0.889 14 C -0.150 4.150 15 C -0.162 4.162 16 C -0.143 4.143 17 C -0.053 4.053 18 C -0.038 4.038 19 N -0.389 5.389 20 C -0.078 4.078 21 H 0.074 0.926 22 H 0.013 0.987 23 H -0.022 1.022 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.090 0.910 37 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 6.821 -15.526 -2.813 17.190 hybrid contribution -0.408 0.443 -0.732 0.948 sum 6.413 -15.083 -3.545 16.769 Atomic orbital electron populations 1.70096 1.07838 1.28048 1.51657 1.25997 0.95825 1.03425 0.94634 0.85378 0.78147 0.77556 0.79187 1.20501 1.19238 1.19113 1.21404 0.93509 0.91121 1.50291 0.92182 1.19458 0.90266 0.89918 0.92893 1.65357 1.28971 1.02718 1.27216 1.23010 0.97683 0.97154 0.89878 1.22561 0.99782 0.92482 0.95590 0.88902 1.22394 0.97333 1.00046 0.95259 1.22471 0.96631 0.99911 0.97223 1.22365 0.99642 0.97881 0.94420 1.21864 0.94591 0.94319 0.94561 1.21509 0.93280 0.97186 0.91784 1.58520 1.26835 1.38747 1.14820 1.23112 0.94607 0.89526 1.00582 0.92600 0.98706 1.02239 0.96364 0.92259 0.92181 0.88964 0.94424 0.89201 0.89234 0.91925 0.93400 0.92516 0.84059 0.83617 0.90967 0.96942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 46.03 29.54 68.60 2.03 48.05 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.53 -31.78 8.97 25.60 0.23 -31.55 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.20 11.72 4.59 85.55 0.39 12.11 16 10 N -0.52 -24.63 5.33 -886.44 -4.72 -29.35 16 11 C 0.05 2.09 5.50 86.44 0.48 2.57 16 12 C -0.08 -2.50 3.58 -9.30 -0.03 -2.53 16 13 H 0.09 2.49 7.88 -2.39 -0.02 2.47 16 14 C -0.11 -2.67 6.10 31.62 0.19 -2.47 16 15 C -0.12 -2.95 6.82 31.85 0.22 -2.73 16 16 C -0.11 -2.39 4.77 31.62 0.15 -2.24 16 17 C -0.05 -1.49 0.74 -50.69 -0.04 -1.53 16 18 C 0.09 2.27 5.77 86.30 0.50 2.77 16 19 N -0.86 -18.68 8.90 -186.71 -1.66 -20.34 16 20 C 0.05 1.98 5.35 86.43 0.46 2.44 16 21 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 22 H -0.01 -0.33 8.08 -2.38 -0.02 -0.35 16 23 H -0.04 -2.51 7.77 -2.39 -0.02 -2.53 16 24 H 0.02 0.80 7.22 -2.39 -0.02 0.78 16 25 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.06 1.51 7.74 -2.39 -0.02 1.49 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.09 1.52 7.98 -2.39 -0.02 1.50 16 31 H 0.06 1.50 7.74 -2.38 -0.02 1.48 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.35 6.32 8.13 -89.69 -0.73 5.59 16 35 H 0.35 6.08 9.08 -89.70 -0.81 5.26 16 36 H 0.07 3.00 7.36 -2.39 -0.02 2.99 16 37 H 0.01 0.52 7.47 -2.39 -0.02 0.50 16 Total: -1.00 -69.42 287.45 -1.56 -70.98 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.50 Total: 12.04 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 3.01 Total: -22.76 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -6.10 Total: -108.31 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -69.42 -1.56 -70.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307625283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.985 kcal (2) G-P(sol) polarization free energy of solvation -69.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds