Wall clock time and date at job start Mon Mar 30 2020 03:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00326 * 2 1 4 4 H 1.48501 * 109.47206 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47524 * 240.00120 * 3 2 1 6 6 H 1.48503 * 109.46954 * 120.00179 * 3 2 1 7 7 C 1.37886 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99713 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46879 * 180.02562 * 9 7 2 11 11 C 1.50033 * 110.99933 * 289.77952 * 10 9 7 12 12 C 1.51533 * 102.46020 * 212.65739 * 11 10 9 13 13 H 1.08997 * 111.53819 * 287.99358 * 12 11 10 14 14 C 1.51576 * 123.29568 * 151.73081 * 12 11 10 15 15 C 1.56331 * 101.81757 * 207.91447 * 14 12 11 16 16 C 1.55996 * 105.77518 * 25.42946 * 15 14 12 17 17 C 1.49718 * 103.99490 * 6.93428 * 16 15 14 18 18 C 1.52999 * 107.87552 * 77.78218 * 17 16 15 19 19 N 1.46898 * 109.47129 * 76.74416 * 18 17 16 20 20 C 1.49696 * 111.00390 * 169.99692 * 10 9 7 21 21 H 0.97003 * 120.00296 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47084 * 299.99693 * 9 7 2 23 23 H 1.08990 * 109.47721 * 60.00280 * 9 7 2 24 24 H 1.09003 * 110.80782 * 330.90116 * 11 10 9 25 25 H 1.09004 * 110.81151 * 94.41270 * 11 10 9 26 26 H 1.08995 * 110.96234 * 326.05186 * 14 12 11 27 27 H 1.09001 * 110.95848 * 89.74578 * 14 12 11 28 28 H 1.09000 * 110.18539 * 144.50373 * 15 14 12 29 29 H 1.08999 * 110.18874 * 266.34900 * 15 14 12 30 30 H 1.08999 * 110.52211 * 248.30426 * 16 15 14 31 31 H 1.09002 * 110.52107 * 125.56559 * 16 15 14 32 32 H 1.09004 * 109.47064 * 196.74247 * 18 17 16 33 33 H 1.08992 * 109.47195 * 316.74034 * 18 17 16 34 34 H 1.00898 * 110.99918 * 179.97438 * 19 18 17 35 35 H 1.00903 * 111.00010 * 303.95408 * 19 18 17 36 36 H 1.08996 * 110.40805 * 234.10368 * 20 10 9 37 37 H 1.09001 * 110.39829 * 356.40653 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6963 -1.2125 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 2.9150 -3.7165 -1.3186 12 6 3.1394 -5.2088 -1.4559 13 1 3.9056 -5.5634 -0.7665 14 6 3.2387 -5.9158 -2.7931 15 6 2.7327 -7.3509 -2.4348 16 6 1.8092 -7.1765 -1.1898 17 6 1.7005 -5.6924 -1.0247 18 6 0.7065 -5.1755 -2.0667 19 7 -0.6629 -5.4778 -1.6294 20 6 1.5079 -4.9179 0.2422 21 1 -0.4851 -0.8400 -0.0004 22 1 0.6246 -2.5571 0.8897 23 1 0.6239 -2.5568 -0.8902 24 1 2.2857 -3.3435 -2.1267 25 1 3.8652 -3.1832 -1.2886 26 1 2.5890 -5.4462 -3.5316 27 1 4.2701 -5.9418 -3.1447 28 1 2.1668 -7.7689 -3.2674 29 1 3.5759 -7.9969 -2.1903 30 1 2.2666 -7.6265 -0.3087 31 1 0.8282 -7.6131 -1.3775 32 1 0.8232 -4.0973 -2.1766 33 1 0.8979 -5.6611 -3.0235 34 1 -1.3385 -5.1458 -2.3011 35 1 -0.7781 -6.4655 -1.4581 36 1 1.9641 -5.4428 1.0815 37 1 0.4472 -4.7515 0.4304 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307625284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:38 Heat of formation + Delta-G solvation = 18.047750 kcal Electronic energy + Delta-G solvation = -16552.644724 eV Core-core repulsion = 14136.888267 eV Total energy + Delta-G solvation = -2415.756457 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.92373 -35.44044 -33.58055 -32.73818 -29.73219 -29.02714 -25.92901 -25.61237 -24.20018 -22.49653 -20.43294 -19.60701 -18.23607 -16.71691 -16.03395 -15.87336 -15.00637 -14.50822 -13.86768 -13.66352 -13.38605 -13.11138 -12.90194 -12.22216 -12.02351 -11.91732 -11.41145 -11.21541 -10.98257 -10.90330 -10.86200 -10.56778 -10.41078 -10.12076 -9.97584 -9.89888 -9.60314 -8.54809 -8.41115 -8.28904 -7.20773 -6.27719 -3.95646 3.48613 3.51665 3.69975 4.19137 4.57944 4.70425 4.77026 4.88844 5.13699 5.23843 5.33673 5.46711 5.48267 5.51963 5.58757 5.75478 5.84085 5.90477 5.96859 6.06829 6.15333 6.18529 6.29968 6.46413 6.58499 6.61891 6.68449 6.75749 7.05807 7.22189 7.31048 7.59626 7.82684 8.07080 8.39400 8.68909 8.97307 9.75108 11.11509 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.042207 B = 0.007691 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.234123 B = 3639.817187 C = 3935.464231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.071 2.929 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.587 4.587 8 H 0.054 0.946 9 C 0.181 3.819 10 N -0.514 5.514 11 C 0.067 3.933 12 C -0.113 4.113 13 H 0.083 0.917 14 C -0.112 4.112 15 C -0.120 4.120 16 C -0.097 4.097 17 C -0.096 4.096 18 C 0.057 3.943 19 N -0.844 5.844 20 C 0.062 3.938 21 H 0.267 0.733 22 H 0.017 0.983 23 H -0.015 1.015 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.339 0.661 35 H 0.332 0.668 36 H 0.058 0.942 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 -14.187 -5.820 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.900 3.100 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.626 4.626 8 H 0.073 0.927 9 C 0.055 3.945 10 N -0.238 5.238 11 C -0.061 4.061 12 C -0.133 4.133 13 H 0.101 0.899 14 C -0.150 4.150 15 C -0.158 4.158 16 C -0.135 4.135 17 C -0.098 4.098 18 C -0.073 4.073 19 N -0.373 5.373 20 C -0.066 4.066 21 H 0.078 0.922 22 H 0.035 0.965 23 H 0.003 0.997 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.043 0.957 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.687 -11.926 -4.776 13.365 hybrid contribution -0.505 -2.428 -1.518 2.907 sum 3.182 -14.354 -6.294 15.993 Atomic orbital electron populations 1.70776 1.06851 1.30457 1.47213 1.25821 0.96529 1.02600 0.94139 0.83511 0.74785 0.75254 0.76468 1.20909 1.21605 1.21433 1.22009 0.94773 0.91169 1.54622 0.92750 1.19970 0.90619 0.89071 0.94859 1.65158 1.28015 1.01988 1.28649 1.22360 0.99206 0.92671 0.91844 1.22641 0.96893 0.96759 0.97012 0.89894 1.21997 1.00775 0.95179 0.97013 1.22951 0.98692 0.96926 0.97200 1.21368 0.99027 0.95040 0.98085 1.21466 0.95589 0.94913 0.97810 1.22378 0.88106 1.01867 0.94951 1.58603 1.04667 1.21442 1.52607 1.21959 0.99247 0.90934 0.94428 0.92246 0.96458 0.99744 0.93440 0.91103 0.91296 0.91812 0.92328 0.91779 0.91583 0.92299 0.89934 0.95673 0.84922 0.85559 0.92329 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.68 13.65 55.43 0.76 -27.92 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 26.04 29.90 -169.99 -5.08 20.96 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.59 -17.27 8.84 -34.44 -0.30 -17.57 16 8 H 0.05 1.61 7.80 -52.49 -0.41 1.20 16 9 C 0.18 4.88 3.63 -4.98 -0.02 4.86 16 10 N -0.51 -11.67 5.24 -233.74 -1.22 -12.89 16 11 C 0.07 1.33 5.50 -2.81 -0.02 1.31 16 12 C -0.11 -1.78 3.00 -89.45 -0.27 -2.05 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.11 -1.41 6.20 -25.66 -0.16 -1.57 16 15 C -0.12 -1.32 6.43 -23.34 -0.15 -1.47 16 16 C -0.10 -1.19 6.08 -26.75 -0.16 -1.35 16 17 C -0.10 -1.49 1.03 -155.12 -0.16 -1.65 16 18 C 0.06 0.89 4.58 -3.83 -0.02 0.88 16 19 N -0.84 -12.21 8.78 -10.37 -0.09 -12.30 16 20 C 0.06 1.19 6.07 -3.88 -0.02 1.17 16 21 H 0.27 8.40 7.22 -40.82 -0.29 8.11 16 22 H 0.02 0.51 7.86 -51.93 -0.41 0.10 16 23 H -0.02 -0.42 6.48 -51.93 -0.34 -0.76 16 24 H 0.05 1.00 5.72 -51.93 -0.30 0.70 16 25 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.07 0.90 6.33 -51.93 -0.33 0.57 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.66 6.64 -51.93 -0.34 0.32 16 32 H 0.08 1.61 4.13 -51.93 -0.21 1.39 16 33 H 0.03 0.36 5.74 -51.93 -0.30 0.06 16 34 H 0.34 4.45 9.08 -39.29 -0.36 4.09 16 35 H 0.33 4.06 7.61 -39.29 -0.30 3.76 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.49 6.70 -51.93 -0.35 1.14 16 LS Contribution 274.01 15.07 4.13 4.13 Total: -1.00 -31.42 274.01 -8.58 -40.00 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.69 Total: 5.20 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.38 Total: -17.17 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.56 Total: -53.12 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.42 -8.58 -40.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307625284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.051 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds