Wall clock time and date at job start Mon Mar 30 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.81405 * 2 1 4 4 C 1.54913 * 110.75238 * 236.67710 * 2 1 3 5 5 C 1.54338 * 104.20350 * 203.88488 * 4 2 1 6 6 C 1.53590 * 106.49611 * 23.56983 * 5 4 2 7 7 C 1.54005 * 106.88121 * 359.93197 * 6 5 4 8 8 C 1.52769 * 109.96044 * 118.95455 * 6 5 4 9 9 C 1.53241 * 109.17149 * 178.30872 * 8 6 5 10 10 C 1.53175 * 109.00040 * 303.60350 * 9 8 6 11 11 C 1.53074 * 109.23467 * 57.27496 * 10 9 8 12 12 H 1.09006 * 109.48357 * 62.08326 * 11 10 9 13 13 C 1.50707 * 109.48296 * 182.10800 * 11 10 9 14 14 H 1.07999 * 119.99858 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00116 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99815 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00058 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46982 * 90.00386 * 17 15 13 19 19 H 1.48504 * 109.47234 * 210.00150 * 17 15 13 20 20 H 1.48501 * 109.47088 * 330.00327 * 17 15 13 21 21 O 1.42536 * 110.07593 * 240.72746 * 6 5 4 22 22 H 1.09005 * 109.46868 * 296.68456 * 1 2 3 23 23 H 1.09005 * 109.47152 * 56.67940 * 1 2 3 24 24 H 1.08994 * 109.47233 * 176.68339 * 1 2 3 25 25 H 1.09001 * 110.48493 * 322.56902 * 4 2 1 26 26 H 1.09006 * 110.48168 * 85.20387 * 4 2 1 27 27 H 1.08999 * 110.05151 * 264.31543 * 5 4 2 28 28 H 1.08995 * 110.09706 * 142.85845 * 5 4 2 29 29 H 1.09000 * 110.49959 * 217.89580 * 7 6 5 30 30 H 1.09003 * 110.61635 * 95.27186 * 7 6 5 31 31 H 1.08999 * 109.52352 * 298.22031 * 8 6 5 32 32 H 1.09008 * 109.51811 * 58.33895 * 8 6 5 33 33 H 1.08999 * 109.54546 * 63.45961 * 9 8 6 34 34 H 1.09000 * 109.54643 * 183.74013 * 9 8 6 35 35 H 1.08997 * 109.51073 * 177.20673 * 10 9 8 36 36 H 1.09002 * 109.50967 * 297.34764 * 10 9 8 37 37 H 0.96997 * 119.99900 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0789 -0.7958 -1.2105 5 6 3.4924 -1.2303 -0.7685 6 6 3.4884 -1.2302 0.7674 7 6 2.0790 -0.7959 1.2109 8 6 3.7827 -2.6354 1.2897 9 6 3.8162 -2.6061 2.8215 10 6 4.8522 -1.5744 3.2780 11 6 4.4986 -0.2082 2.6848 12 1 3.5244 0.1087 3.0571 13 6 5.5432 0.8004 3.0882 14 1 6.3762 0.4978 3.7054 15 6 5.4360 2.1093 2.6684 16 7 4.4220 2.4778 1.9164 17 14 6.7311 3.3594 3.1678 18 1 7.8140 3.3830 2.1519 19 1 6.1103 4.7052 3.2608 20 1 7.2987 2.9837 4.4876 21 8 4.4557 -0.3061 1.2592 22 1 -0.3633 0.4615 0.9183 23 1 -0.3634 0.5645 -0.8588 24 1 -0.3633 -1.0259 -0.0594 25 1 1.4558 -1.6682 -1.4076 26 1 2.1342 -0.1581 -2.0928 27 1 4.2340 -0.5232 -1.1402 28 1 3.7105 -2.2308 -1.1417 29 1 2.1360 -0.1579 2.0929 30 1 1.4541 -1.6665 1.4104 31 1 3.0024 -3.3191 0.9554 32 1 4.7478 -2.9705 0.9097 33 1 2.8332 -2.3292 3.2025 34 1 4.0911 -3.5910 3.1991 35 1 4.8478 -1.5110 4.3661 36 1 5.8418 -1.8755 2.9342 37 1 4.3464 3.3987 1.6213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307695943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:16 Heat of formation + Delta-G solvation = -75.235104 kcal Electronic energy + Delta-G solvation = -16749.686463 eV Core-core repulsion = 14297.592207 eV Total energy + Delta-G solvation = -2452.094256 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.32428 -35.83880 -32.79465 -32.26830 -30.82147 -28.74381 -26.76224 -25.30500 -23.62780 -21.90502 -20.34079 -19.31403 -17.93329 -16.47995 -15.55982 -14.67817 -14.39939 -14.24873 -14.01036 -13.33413 -12.92156 -12.73007 -12.31408 -12.06160 -11.90728 -11.56544 -11.07879 -10.95951 -10.78078 -10.64876 -10.52349 -10.30412 -10.28971 -10.21672 -9.98245 -9.86202 -9.56053 -9.32190 -8.73094 -8.41841 -7.68149 -5.95873 -4.07120 3.33625 3.40003 3.42622 4.45658 4.94461 5.20697 5.24818 5.37589 5.60761 5.64903 5.70209 5.75721 5.88404 6.03091 6.04267 6.16572 6.17982 6.20529 6.30851 6.35739 6.43118 6.45760 6.49512 6.60415 6.70247 6.72382 6.78115 6.93307 6.96455 7.06556 7.08843 7.23567 7.61981 7.95535 8.36370 8.86616 9.26400 9.62384 11.11287 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.027089 B = 0.010533 C = 0.008667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.386661 B = 2657.592862 C = 3230.055020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.086 0.914 4 C -0.115 4.115 5 C -0.109 4.109 6 C 0.111 3.889 7 C -0.138 4.138 8 C -0.136 4.136 9 C -0.120 4.120 10 C -0.144 4.144 11 C 0.218 3.782 12 H 0.019 0.981 13 C -0.528 4.528 14 H 0.062 0.938 15 C 0.079 3.921 16 N -0.857 5.857 17 Si 0.889 3.111 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 O -0.344 6.344 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 -6.977 -3.303 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.152 4.152 5 C -0.147 4.147 6 C 0.070 3.930 7 C -0.175 4.175 8 C -0.173 4.173 9 C -0.158 4.158 10 C -0.182 4.182 11 C 0.162 3.838 12 H 0.036 0.964 13 C -0.565 4.565 14 H 0.080 0.920 15 C -0.127 4.127 16 N -0.493 5.493 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 O -0.263 6.263 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.446 -6.722 -3.510 9.336 hybrid contribution 0.546 0.483 0.383 0.824 sum -4.900 -6.239 -3.127 8.527 Atomic orbital electron populations 1.21747 0.96168 1.00701 1.01039 1.22039 0.93908 1.00506 0.94688 0.89560 1.22377 0.96129 0.98898 0.97804 1.22074 0.97301 1.00648 0.94670 1.21562 0.89668 0.88962 0.92836 1.22961 0.96444 0.99059 0.99083 1.22163 1.00866 0.97988 0.96321 1.21629 0.99903 0.98689 0.95560 1.22253 0.97934 0.98062 0.99995 1.19718 0.96461 0.89385 0.78218 0.96355 1.21014 1.10616 0.92614 1.32249 0.92027 1.25034 0.95211 0.98328 0.94111 1.70039 1.28846 1.17218 1.33229 0.86672 0.82037 0.80709 0.78983 1.20573 1.21207 1.19854 1.88332 1.54827 1.58997 1.24133 0.92977 0.93377 0.93428 0.92579 0.92398 0.90744 0.92379 0.90219 0.92950 0.92802 0.92241 0.92617 0.93505 0.92714 0.92730 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.28 37.16 0.34 -1.68 16 2 C -0.09 -1.66 3.50 -88.58 -0.31 -1.97 16 3 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 4 C -0.11 -1.84 6.28 -25.02 -0.16 -1.99 16 5 C -0.11 -1.99 6.27 -25.72 -0.16 -2.15 16 6 C 0.11 2.26 0.98 -89.91 -0.09 2.18 16 7 C -0.14 -2.67 4.36 -25.17 -0.11 -2.78 16 8 C -0.14 -2.45 4.53 -26.73 -0.12 -2.58 16 9 C -0.12 -2.20 5.80 -26.52 -0.15 -2.36 16 10 C -0.14 -3.14 5.34 -26.60 -0.14 -3.29 16 11 C 0.22 5.62 2.23 -27.84 -0.06 5.56 16 12 H 0.02 0.52 6.06 -51.93 -0.31 0.20 16 13 C -0.53 -14.96 8.79 -34.44 -0.30 -15.26 16 14 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 15 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 16 N -0.86 -25.04 12.84 55.43 0.71 -24.33 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 O -0.34 -8.86 9.19 -35.23 -0.32 -9.18 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.06 0.79 8.01 -51.93 -0.42 0.38 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.49 7.95 -51.93 -0.41 1.08 16 28 H 0.06 0.92 7.66 -51.93 -0.40 0.53 16 29 H 0.08 1.78 5.82 -51.93 -0.30 1.48 16 30 H 0.05 0.90 7.65 -51.93 -0.40 0.50 16 31 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.06 1.00 7.43 -51.93 -0.39 0.61 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 283.59 15.07 4.27 4.27 Total: -1.00 -29.28 283.59 -8.11 -37.38 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.39 Total: -0.47 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -1.36 Total: -24.17 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.71 Total: -24.33 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.32 Total: -9.18 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.28 -8.11 -37.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307695943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.850 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds