Wall clock time and date at job start Mon Mar 30 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.81405 * 2 1 4 4 C 1.54913 * 110.75238 * 236.67710 * 2 1 3 5 5 C 1.54338 * 104.20350 * 203.88488 * 4 2 1 6 6 C 1.53590 * 106.49611 * 23.56983 * 5 4 2 7 7 C 1.54005 * 106.88121 * 359.93197 * 6 5 4 8 8 C 1.52769 * 109.96044 * 118.95455 * 6 5 4 9 9 C 1.53241 * 109.17149 * 178.30872 * 8 6 5 10 10 C 1.53175 * 109.00040 * 303.60350 * 9 8 6 11 11 C 1.53074 * 109.23467 * 57.27496 * 10 9 8 12 12 H 1.09006 * 109.48357 * 62.08326 * 11 10 9 13 13 C 1.50707 * 109.48296 * 182.10800 * 11 10 9 14 14 H 1.07999 * 119.99858 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00116 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99815 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00058 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46982 * 90.00386 * 17 15 13 19 19 H 1.48504 * 109.47234 * 210.00150 * 17 15 13 20 20 H 1.48501 * 109.47088 * 330.00327 * 17 15 13 21 21 O 1.42536 * 110.07593 * 240.72746 * 6 5 4 22 22 H 1.09005 * 109.46868 * 296.68456 * 1 2 3 23 23 H 1.09005 * 109.47152 * 56.67940 * 1 2 3 24 24 H 1.08994 * 109.47233 * 176.68339 * 1 2 3 25 25 H 1.09001 * 110.48493 * 322.56902 * 4 2 1 26 26 H 1.09006 * 110.48168 * 85.20387 * 4 2 1 27 27 H 1.08999 * 110.05151 * 264.31543 * 5 4 2 28 28 H 1.08995 * 110.09706 * 142.85845 * 5 4 2 29 29 H 1.09000 * 110.49959 * 217.89580 * 7 6 5 30 30 H 1.09003 * 110.61635 * 95.27186 * 7 6 5 31 31 H 1.08999 * 109.52352 * 298.22031 * 8 6 5 32 32 H 1.09008 * 109.51811 * 58.33895 * 8 6 5 33 33 H 1.08999 * 109.54546 * 63.45961 * 9 8 6 34 34 H 1.09000 * 109.54643 * 183.74013 * 9 8 6 35 35 H 1.08997 * 109.51073 * 177.20673 * 10 9 8 36 36 H 1.09002 * 109.50967 * 297.34764 * 10 9 8 37 37 H 0.96997 * 119.99900 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0789 -0.7958 -1.2105 5 6 3.4924 -1.2303 -0.7685 6 6 3.4884 -1.2302 0.7674 7 6 2.0790 -0.7959 1.2109 8 6 3.7827 -2.6354 1.2897 9 6 3.8162 -2.6061 2.8215 10 6 4.8522 -1.5744 3.2780 11 6 4.4986 -0.2082 2.6848 12 1 3.5244 0.1087 3.0571 13 6 5.5432 0.8004 3.0882 14 1 6.3762 0.4978 3.7054 15 6 5.4360 2.1093 2.6684 16 7 4.4220 2.4778 1.9164 17 14 6.7311 3.3594 3.1678 18 1 7.8140 3.3830 2.1519 19 1 6.1103 4.7052 3.2608 20 1 7.2987 2.9837 4.4876 21 8 4.4557 -0.3061 1.2592 22 1 -0.3633 0.4615 0.9183 23 1 -0.3634 0.5645 -0.8588 24 1 -0.3633 -1.0259 -0.0594 25 1 1.4558 -1.6682 -1.4076 26 1 2.1342 -0.1581 -2.0928 27 1 4.2340 -0.5232 -1.1402 28 1 3.7105 -2.2308 -1.1417 29 1 2.1360 -0.1579 2.0929 30 1 1.4541 -1.6665 1.4104 31 1 3.0024 -3.3191 0.9554 32 1 4.7478 -2.9705 0.9097 33 1 2.8332 -2.3292 3.2025 34 1 4.0911 -3.5910 3.1991 35 1 4.8478 -1.5110 4.3661 36 1 5.8418 -1.8755 2.9342 37 1 4.3464 3.3987 1.6213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307695943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:16 Heat of formation + Delta-G solvation = -91.764605 kcal Electronic energy + Delta-G solvation = -16750.403236 eV Core-core repulsion = 14297.592207 eV Total energy + Delta-G solvation = -2452.811029 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93664 -37.43815 -34.74193 -34.05104 -32.43323 -30.30940 -28.40295 -27.06424 -25.13324 -23.70051 -21.93488 -20.74738 -19.58918 -18.58261 -17.18905 -16.64028 -16.04008 -15.89908 -15.48871 -14.91663 -14.59281 -14.23663 -13.81503 -13.68298 -13.42378 -13.04081 -12.85343 -12.71264 -12.54494 -12.28897 -12.17619 -11.99836 -11.91601 -11.68023 -11.52536 -11.28961 -11.21277 -10.99340 -10.74462 -10.41174 -9.50518 -8.11405 -6.31049 1.38767 1.40368 1.50362 2.40857 3.05984 3.57602 3.81228 3.82998 4.13887 4.19058 4.23542 4.26287 4.52323 4.57090 4.64715 4.71133 4.74962 4.78099 4.87463 4.94802 5.00533 5.05890 5.06699 5.16300 5.16977 5.23663 5.25888 5.35499 5.41587 5.50422 5.58205 5.62775 5.70994 5.86286 6.27730 6.72201 7.35402 7.47587 8.95172 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.027089 B = 0.010533 C = 0.008667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.386661 B = 2657.592862 C = 3230.055020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.038 0.962 4 C -0.104 4.104 5 C -0.110 4.110 6 C 0.092 3.908 7 C -0.132 4.132 8 C -0.131 4.131 9 C -0.115 4.115 10 C -0.140 4.140 11 C 0.218 3.782 12 H -0.012 1.012 13 C -0.557 4.557 14 H 0.059 0.941 15 C 0.027 3.973 16 N -0.889 5.889 17 Si 0.956 3.044 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.264 1.264 21 O -0.379 6.379 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 -8.839 -3.948 11.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.057 0.943 4 C -0.141 4.141 5 C -0.147 4.147 6 C 0.052 3.948 7 C -0.170 4.170 8 C -0.168 4.168 9 C -0.152 4.152 10 C -0.178 4.178 11 C 0.163 3.837 12 H 0.006 0.994 13 C -0.594 4.594 14 H 0.077 0.923 15 C -0.175 4.175 16 N -0.526 5.526 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.188 1.188 21 O -0.299 6.299 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.163 -8.595 -4.150 11.361 hybrid contribution 0.756 1.056 0.578 1.421 sum -5.407 -7.539 -3.573 9.941 Atomic orbital electron populations 1.21683 0.93295 1.02499 1.01395 1.21988 0.96301 0.97995 0.95186 0.94333 1.22360 0.94966 0.99919 0.96880 1.22124 0.98006 1.01578 0.93027 1.22020 0.89010 0.89517 0.94279 1.22882 0.96679 0.99449 0.97946 1.22141 1.02093 0.96745 0.95867 1.21601 0.98695 0.98914 0.96002 1.22129 0.98768 0.97018 0.99894 1.19507 0.94251 0.91141 0.78845 0.99406 1.21466 1.11154 0.94085 1.32707 0.92303 1.25863 0.97284 1.00322 0.94074 1.70185 1.30563 1.17512 1.34307 0.85616 0.79246 0.78189 0.78895 1.20319 1.20500 1.18815 1.88212 1.56774 1.61246 1.23696 0.93744 0.91912 0.90907 0.89075 0.91672 0.93841 0.89373 0.94417 0.90051 0.89174 0.92319 0.92412 0.90254 0.92485 0.93454 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.28 71.98 0.67 -2.89 16 2 C -0.10 -3.39 3.50 -9.47 -0.03 -3.42 16 3 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 4 C -0.10 -3.09 6.28 31.70 0.20 -2.89 16 5 C -0.11 -3.85 6.27 31.25 0.20 -3.66 16 6 C 0.09 3.71 0.98 -10.33 -0.01 3.70 16 7 C -0.13 -5.07 4.36 31.60 0.14 -4.93 16 8 C -0.13 -4.39 4.53 30.60 0.14 -4.25 16 9 C -0.11 -3.96 5.80 30.73 0.18 -3.78 16 10 C -0.14 -6.12 5.34 30.68 0.16 -5.96 16 11 C 0.22 11.73 2.23 29.87 0.07 11.79 16 12 H -0.01 -0.67 6.06 -2.38 -0.01 -0.68 16 13 C -0.56 -32.75 8.79 25.60 0.23 -32.52 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.03 1.60 5.40 84.65 0.46 2.06 16 16 N -0.89 -54.27 12.84 21.45 0.28 -54.00 16 17 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 21 O -0.38 -20.25 9.19 -148.98 -1.37 -21.62 16 22 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 25 H 0.09 2.12 8.01 -2.39 -0.02 2.10 16 26 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.04 1.77 7.95 -2.39 -0.02 1.75 16 28 H 0.09 2.52 7.66 -2.39 -0.02 2.51 16 29 H 0.04 1.76 5.82 -2.39 -0.01 1.75 16 30 H 0.08 2.60 7.65 -2.39 -0.02 2.58 16 31 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.06 1.97 7.43 -2.39 -0.02 1.95 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -66.69 283.59 4.33 -62.36 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.01 Total: 12.71 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 2.39 Total: -46.76 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.28 Total: -54.00 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.37 Total: -21.62 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -66.69 4.33 -62.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307695943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.405 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds