Wall clock time and date at job start Mon Mar 30 2020 02:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 119.99842 * 2 1 4 4 C 1.50701 * 120.00450 * 180.02562 * 2 1 3 5 5 H 1.08996 * 110.01655 * 150.14732 * 4 2 1 6 6 C 1.54258 * 110.03205 * 28.74491 * 4 2 1 7 7 C 1.54885 * 104.19771 * 217.05766 * 6 4 2 8 8 C 1.54893 * 102.91370 * 37.85305 * 7 6 4 9 9 H 1.08999 * 110.48504 * 80.82764 * 8 7 6 10 10 O 1.42899 * 110.48571 * 203.46749 * 8 7 6 11 11 C 1.53877 * 110.06815 * 271.55584 * 4 2 1 12 12 C 1.52999 * 110.03387 * 238.63652 * 11 4 2 13 13 C 1.52999 * 110.03728 * 0.02562 * 11 4 2 14 14 C 1.50697 * 109.47349 * 179.04778 * 13 11 4 15 15 H 1.07998 * 120.00183 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99969 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99957 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99885 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47235 * 60.00886 * 18 16 14 20 20 H 1.48506 * 109.47144 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47545 * 300.00294 * 18 16 14 22 22 H 1.07996 * 120.00624 * 354.10651 * 1 2 3 23 23 H 1.08005 * 119.99659 * 174.10479 * 1 2 3 24 24 H 1.08995 * 109.47423 * 174.80265 * 3 2 1 25 25 H 1.09003 * 109.47232 * 294.80931 * 3 2 1 26 26 H 1.09006 * 109.46910 * 54.80470 * 3 2 1 27 27 H 1.09010 * 110.48225 * 98.38268 * 6 4 2 28 28 H 1.08996 * 110.60405 * 335.79477 * 6 4 2 29 29 H 1.09004 * 110.75981 * 156.25868 * 7 6 4 30 30 H 1.08998 * 110.76254 * 279.44592 * 7 6 4 31 31 H 0.96698 * 114.00411 * 298.55028 * 10 8 7 32 32 H 1.09004 * 109.46961 * 60.00429 * 12 11 4 33 33 H 1.08996 * 109.47064 * 180.02562 * 12 11 4 34 34 H 1.08996 * 109.47464 * 300.00764 * 12 11 4 35 35 H 1.09006 * 109.46737 * 299.04790 * 13 11 4 36 36 H 1.08997 * 109.47246 * 59.04258 * 13 11 4 37 37 H 0.96997 * 119.99884 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 1 3.0193 -1.1837 -0.5103 6 6 1.2274 -2.3977 -0.6980 7 6 1.5193 -3.6798 0.1205 8 6 1.5925 -3.1527 1.5751 9 1 0.5908 -3.0291 1.9869 10 8 2.3637 -4.0379 2.3897 11 6 2.2936 -1.7826 1.4440 12 6 3.7919 -1.9366 1.7128 13 6 1.6847 -0.7833 2.4297 14 6 1.8966 -1.2746 3.8385 15 1 2.4142 -2.2062 4.0134 16 6 1.4305 -0.5343 4.9042 17 7 0.8006 0.6005 4.6912 18 14 1.6926 -1.1437 6.6504 19 1 3.1477 -1.2767 6.9152 20 1 1.1016 -0.1737 7.6071 21 1 1.0362 -2.4652 6.8173 22 1 -0.5401 0.9303 0.0960 23 1 -0.5400 -0.9304 -0.0961 24 1 3.1314 1.1082 0.0931 25 1 1.8716 1.8354 -0.9328 26 1 1.7321 1.9160 0.8399 27 1 1.5501 -2.5234 -1.7317 28 1 0.1661 -2.1528 -0.6578 29 1 0.7091 -4.4008 0.0112 30 1 2.4699 -4.1212 -0.1787 31 1 1.9972 -4.9303 2.4570 32 1 4.2873 -0.9762 1.5698 33 1 3.9442 -2.2753 2.7375 34 1 4.2116 -2.6682 1.0224 35 1 2.1658 0.1871 2.3071 36 1 0.6165 -0.6863 2.2355 37 1 0.4724 1.1211 5.4409 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307749227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:40 Heat of formation + Delta-G solvation = -68.161430 kcal Electronic energy + Delta-G solvation = -16720.737241 eV Core-core repulsion = 14268.949723 eV Total energy + Delta-G solvation = -2451.787519 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.93517 -37.08772 -35.18303 -34.24365 -32.79376 -28.95549 -28.42030 -27.46508 -26.28363 -24.13950 -22.08820 -20.16263 -18.34379 -18.22629 -17.90610 -16.69662 -16.21962 -15.88440 -15.01268 -14.90464 -14.40881 -14.19496 -13.97865 -13.85382 -13.39094 -13.17892 -12.88288 -12.74055 -12.63126 -12.52307 -12.22762 -12.12297 -12.01708 -11.54178 -11.22356 -11.10743 -10.90096 -10.72079 -10.45132 -10.34834 -9.52985 -8.07255 -6.11396 1.38656 1.40405 1.48162 1.52654 2.46735 3.25815 3.56147 3.75111 3.89891 3.93937 4.25229 4.46447 4.58520 4.59023 4.68061 4.75305 4.78562 4.81374 4.86314 4.91770 5.01900 5.15431 5.18984 5.20040 5.27323 5.38018 5.49614 5.63557 5.65998 5.71998 5.91965 5.94754 6.03461 6.19466 6.48350 7.06287 7.17820 7.54336 9.03792 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.025186 B = 0.011484 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.472856 B = 2437.580480 C = 3079.839907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.105 4.105 3 C -0.113 4.113 4 C -0.052 4.052 5 H 0.081 0.919 6 C -0.119 4.119 7 C -0.146 4.146 8 C 0.119 3.881 9 H 0.033 0.967 10 O -0.568 6.568 11 C -0.046 4.046 12 C -0.105 4.105 13 C 0.049 3.951 14 C -0.514 4.514 15 H 0.064 0.936 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.947 3.053 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.272 1.272 22 H 0.089 0.911 23 H 0.106 0.894 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.380 0.620 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.055 0.945 35 H -0.007 1.007 36 H -0.001 1.001 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 -6.524 -11.394 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.105 4.105 3 C -0.170 4.170 4 C -0.071 4.071 5 H 0.099 0.901 6 C -0.156 4.156 7 C -0.183 4.183 8 C 0.060 3.940 9 H 0.051 0.949 10 O -0.374 6.374 11 C -0.046 4.046 12 C -0.162 4.162 13 C 0.013 3.987 14 C -0.552 4.552 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.774 3.226 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.197 1.197 22 H 0.107 0.893 23 H 0.124 0.876 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.228 0.772 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.011 0.989 36 H 0.017 0.983 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.515 -5.851 -11.239 12.761 hybrid contribution -0.466 -0.209 1.440 1.528 sum 1.049 -6.060 -9.799 11.569 Atomic orbital electron populations 1.23663 0.95696 1.01647 1.04246 1.21618 0.95518 0.95635 0.97756 1.20837 0.99804 0.94817 1.01500 1.20980 0.98702 0.92436 0.94938 0.90095 1.22534 1.00473 0.93326 0.99261 1.23151 1.02688 0.97875 0.94602 1.22512 0.92600 0.89567 0.89277 0.94867 1.86573 1.53212 1.25320 1.72274 1.21183 0.95879 0.93775 0.93810 1.21437 0.94505 0.99163 1.01077 1.19115 0.94369 0.92945 0.92307 1.21838 1.34293 1.06353 0.92741 0.91814 1.25798 0.95844 0.95399 1.02822 1.70103 1.40627 1.15167 1.31779 0.85776 0.78366 0.78022 0.80472 1.19928 1.21350 1.19702 0.89292 0.87608 0.92344 0.89813 0.93854 0.89450 0.90592 0.89966 0.90123 0.77250 0.94767 0.93909 0.92598 0.98862 0.98296 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.53 12.07 67.79 0.82 -6.71 16 2 C -0.11 -3.71 3.42 -16.48 -0.06 -3.76 16 3 C -0.11 -3.78 9.13 71.24 0.65 -3.13 16 4 C -0.05 -1.73 2.76 -10.82 -0.03 -1.76 16 5 H 0.08 2.48 7.64 -2.39 -0.02 2.47 16 6 C -0.12 -3.18 6.20 31.66 0.20 -2.99 16 7 C -0.15 -3.85 6.60 31.89 0.21 -3.64 16 8 C 0.12 4.35 3.03 31.74 0.10 4.45 16 9 H 0.03 1.38 7.85 -2.39 -0.02 1.37 16 10 O -0.57 -20.36 10.83 -148.98 -1.61 -21.97 16 11 C -0.05 -1.88 0.65 -51.39 -0.03 -1.91 16 12 C -0.10 -4.19 7.27 71.98 0.52 -3.67 16 13 C 0.05 2.57 2.72 29.85 0.08 2.65 16 14 C -0.51 -29.48 7.86 25.60 0.20 -29.28 16 15 H 0.06 3.65 5.58 -2.91 -0.02 3.63 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 17 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 18 Si 0.95 46.39 29.54 68.60 2.03 48.42 16 19 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 22 H 0.09 3.06 8.05 -2.91 -0.02 3.04 16 23 H 0.11 3.43 5.53 -2.91 -0.02 3.41 16 24 H 0.06 1.89 7.99 -2.39 -0.02 1.87 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 26 H 0.04 1.66 8.04 -2.38 -0.02 1.64 16 27 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.08 2.05 5.15 -2.39 -0.01 2.04 16 29 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.38 9.72 9.11 -74.06 -0.67 9.04 16 32 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.04 1.94 6.06 -2.39 -0.01 1.92 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H -0.01 -0.39 6.70 -2.38 -0.02 -0.41 16 36 H 0.00 -0.07 6.40 -2.39 -0.02 -0.09 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -67.13 283.42 4.19 -62.94 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.37 Total: 17.75 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 3.12 Total: -49.44 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.28 Total: -57.70 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.61 Total: -21.97 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -67.13 4.19 -62.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307749227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.221 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds