Wall clock time and date at job start Mon Mar 30 2020 02:42:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30999 * 1
3 3 C 1.50703 * 120.00099 * 2 1
4 4 C 1.50704 * 119.99910 * 179.97438 * 2 1 3
5 5 H 1.08998 * 110.01681 * 147.98453 * 4 2 1
6 6 C 1.54268 * 110.03022 * 26.59309 * 4 2 1
7 7 C 1.54895 * 104.19221 * 217.10385 * 6 4 2
8 8 C 1.54892 * 102.74821 * 37.94183 * 7 6 4
9 9 H 1.08998 * 110.48562 * 203.37496 * 8 7 6
10 10 O 1.42908 * 110.48366 * 80.86927 * 8 7 6
11 11 C 1.53874 * 110.02992 * 269.42546 * 4 2 1
12 12 C 1.53007 * 110.02952 * 238.56735 * 11 4 2
13 13 C 1.52992 * 110.03571 * 359.97438 * 11 4 2
14 14 C 1.50704 * 109.47080 * 178.77061 * 13 11 4
15 15 H 1.07995 * 120.00367 * 359.97438 * 14 13 11
16 16 C 1.37885 * 119.99995 * 180.02562 * 14 13 11
17 17 N 1.31509 * 119.99669 * 359.97438 * 16 14 13
18 18 Si 1.86795 * 119.99916 * 179.97438 * 16 14 13
19 19 H 1.48497 * 109.47216 * 89.99668 * 18 16 14
20 20 H 1.48510 * 109.47003 * 209.99856 * 18 16 14
21 21 H 1.48495 * 109.47131 * 329.99456 * 18 16 14
22 22 H 1.08001 * 120.00298 * 186.38446 * 1 2 3
23 23 H 1.08004 * 120.00005 * 6.37270 * 1 2 3
24 24 H 1.08998 * 109.46867 * 275.08340 * 3 2 1
25 25 H 1.09002 * 109.46703 * 35.08730 * 3 2 1
26 26 H 1.08997 * 109.46886 * 155.08492 * 3 2 1
27 27 H 1.08998 * 110.48800 * 98.42820 * 6 4 2
28 28 H 1.08996 * 110.60082 * 335.83289 * 6 4 2
29 29 H 1.08998 * 110.75878 * 279.62627 * 7 6 4
30 30 H 1.08998 * 110.91122 * 156.32762 * 7 6 4
31 31 H 0.96699 * 113.99871 * 63.24376 * 10 8 7
32 32 H 1.08995 * 109.47147 * 301.38425 * 12 11 4
33 33 H 1.08993 * 109.46898 * 61.38465 * 12 11 4
34 34 H 1.08997 * 109.47050 * 181.38348 * 12 11 4
35 35 H 1.09001 * 109.47573 * 298.76837 * 13 11 4
36 36 H 1.09002 * 109.47262 * 58.77064 * 13 11 4
37 37 H 0.97006 * 120.00084 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 2.0635 -1.3051 0.0006
5 1 3.0021 -1.1943 -0.5424
6 6 1.2053 -2.4110 -0.6477
7 6 1.5231 -3.6767 0.1868
8 6 1.6396 -3.1166 1.6262
9 1 2.2458 -3.7781 2.2450
10 8 0.3432 -2.9438 2.2021
11 6 2.3396 -1.7537 1.4464
12 6 3.8457 -1.9046 1.6697
13 6 1.7632 -0.7340 2.4306
14 6 2.0140 -1.2004 3.8416
15 1 2.5322 -2.1313 4.0185
16 6 1.5809 -0.4392 4.9066
17 7 0.9495 0.6940 4.6910
18 14 1.8912 -1.0178 6.6554
19 1 3.1956 -0.4884 7.1278
20 1 0.8062 -0.5227 7.5403
21 1 1.9181 -2.5021 6.6883
22 1 -0.5401 -0.9295 0.1040
23 1 -0.5400 0.9296 -0.1038
24 1 2.1663 1.6652 -1.0236
25 1 1.5169 2.0402 0.5907
26 1 3.0523 1.1537 0.4329
27 1 1.4946 -2.5577 -1.6883
28 1 0.1458 -2.1645 -0.5784
29 1 2.4652 -4.1228 -0.1315
30 1 0.7117 -4.4014 0.1188
31 1 -0.1522 -3.7673 2.3098
32 1 4.2464 -2.6328 0.9646
33 1 4.3340 -0.9425 1.5153
34 1 4.0295 -2.2459 2.6884
35 1 2.2442 0.2319 2.2764
36 1 0.6902 -0.6360 2.2657
37 1 0.6451 1.2298 5.4403
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307749228.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:42:42
Heat of formation + Delta-G solvation = -44.304322 kcal
Electronic energy + Delta-G solvation = -16838.798801 eV
Core-core repulsion = 14388.045804 eV
Total energy + Delta-G solvation = -2450.752997 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.152 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.46302 -35.33829 -33.24067 -32.69686 -31.01762 -27.18712 -26.83504 -26.11540
-24.46165 -22.28360 -20.71227 -18.58145 -16.68475 -16.39632 -15.75327 -15.19884
-14.78030 -14.11752 -14.00911 -12.99187 -12.83881 -12.39790 -12.15709 -12.09062
-11.74437 -11.51937 -11.27564 -11.14936 -10.96664 -10.80029 -10.73509 -10.29942
-10.15574 -10.06298 -9.84118 -9.55018 -9.04565 -8.80554 -8.61449 -8.16405
-7.93345 -5.76387 -3.72659 3.04348 3.41466 3.47934 3.50505 4.62653
4.98352 5.13523 5.18025 5.45639 5.60079 5.70318 5.77958 5.94450
5.98881 6.03882 6.15736 6.18472 6.22569 6.24807 6.26035 6.43673
6.54773 6.63035 6.65272 6.67222 6.74166 6.89457 7.10582 7.33600
7.45744 7.69246 7.93421 8.15625 8.32830 8.59246 8.70346 9.31395
9.85910 11.35453
Molecular weight = 224.15amu
Principal moments of inertia in cm(-1)
A = 0.027410 B = 0.011143 C = 0.009600
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1021.282384 B = 2512.217603 C = 2916.029226
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.092 4.092
3 C -0.112 4.112
4 C -0.053 4.053
5 H 0.065 0.935
6 C -0.119 4.119
7 C -0.162 4.162
8 C 0.122 3.878
9 H 0.046 0.954
10 O -0.526 6.526
11 C -0.047 4.047
12 C -0.127 4.127
13 C 0.046 3.954
14 C -0.487 4.487
15 H 0.047 0.953
16 C 0.054 3.946
17 N -0.898 5.898
18 Si 0.881 3.119
19 H -0.285 1.285
20 H -0.290 1.290
21 H -0.278 1.278
22 H 0.102 0.898
23 H 0.085 0.915
24 H 0.051 0.949
25 H 0.063 0.937
26 H 0.062 0.938
27 H 0.052 0.948
28 H 0.078 0.922
29 H 0.064 0.936
30 H 0.059 0.941
31 H 0.352 0.648
32 H 0.031 0.969
33 H 0.050 0.950
34 H 0.064 0.936
35 H 0.013 0.987
36 H 0.039 0.961
37 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.486 -5.583 -10.048 11.590
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C -0.092 4.092
3 C -0.169 4.169
4 C -0.071 4.071
5 H 0.083 0.917
6 C -0.156 4.156
7 C -0.200 4.200
8 C 0.062 3.938
9 H 0.064 0.936
10 O -0.328 6.328
11 C -0.047 4.047
12 C -0.184 4.184
13 C 0.009 3.991
14 C -0.526 4.526
15 H 0.066 0.934
16 C -0.145 4.145
17 N -0.539 5.539
18 Si 0.710 3.290
19 H -0.212 1.212
20 H -0.216 1.216
21 H -0.203 1.203
22 H 0.120 0.880
23 H 0.103 0.897
24 H 0.070 0.930
25 H 0.082 0.918
26 H 0.081 0.919
27 H 0.071 0.929
28 H 0.096 0.904
29 H 0.083 0.917
30 H 0.078 0.922
31 H 0.195 0.805
32 H 0.050 0.950
33 H 0.069 0.931
34 H 0.083 0.917
35 H 0.032 0.968
36 H 0.057 0.943
37 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 1.605 -4.793 -9.952 11.162
hybrid contribution 0.008 -0.909 1.160 1.474
sum 1.613 -5.702 -8.792 10.603
Atomic orbital electron populations
1.23520 0.95520 1.01198 1.03898 1.21348 0.95177 0.94740 0.97939
1.20830 1.00611 0.95240 1.00212 1.20989 0.97115 0.92195 0.96802
0.91655 1.22570 1.01116 0.94437 0.97471 1.23271 1.00732 0.97462
0.98495 1.22384 0.85043 0.96486 0.89849 0.93603 1.86897 1.28406
1.33330 1.84153 1.21262 0.94152 0.95363 0.93891 1.21799 0.95116
1.00214 1.01263 1.19128 0.97299 0.91535 0.91136 1.21175 1.34710
1.05293 0.91416 0.93447 1.24913 0.95985 0.95320 0.98309 1.69966
1.40139 1.13485 1.30356 0.86785 0.77471 0.78732 0.86037 1.21192
1.21588 1.20294 0.88001 0.89666 0.92997 0.91778 0.91943 0.92909
0.90355 0.91696 0.92190 0.80452 0.94997 0.93097 0.91737 0.96850
0.94268 0.93592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -3.82 11.98 29.01 0.35 -3.47 16
2 C -0.09 -1.71 3.43 -101.06 -0.35 -2.06 16
3 C -0.11 -1.95 9.05 36.01 0.33 -1.62 16
4 C -0.05 -0.94 2.81 -90.65 -0.25 -1.19 16
5 H 0.07 1.09 7.67 -51.93 -0.40 0.69 16
6 C -0.12 -1.86 6.15 -25.07 -0.15 -2.01 16
7 C -0.16 -2.42 6.62 -24.73 -0.16 -2.59 16
8 C 0.12 2.28 2.95 -25.07 -0.07 2.21 16
9 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16
10 O -0.53 -10.73 11.24 -35.23 -0.40 -11.13 16
11 C -0.05 -0.95 0.64 -153.39 -0.10 -1.05 16
12 C -0.13 -2.40 7.89 37.16 0.29 -2.10 16
13 C 0.05 1.17 2.42 -27.88 -0.07 1.10 16
14 C -0.49 -13.72 7.36 -34.44 -0.25 -13.97 16
15 H 0.05 1.31 6.49 -52.49 -0.34 0.97 16
16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16
17 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16
18 Si 0.88 22.36 29.54 -169.99 -5.02 17.34 16
19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
21 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16
22 H 0.10 1.91 5.81 -52.49 -0.31 1.60 16
23 H 0.08 1.50 8.05 -52.48 -0.42 1.07 16
24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
25 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16
26 H 0.06 1.10 7.79 -51.93 -0.40 0.70 16
27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
28 H 0.08 1.27 5.21 -51.93 -0.27 1.00 16
29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
31 H 0.35 5.42 9.12 45.56 0.42 5.83 16
32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
34 H 0.06 1.31 6.66 -51.93 -0.35 0.96 16
35 H 0.01 0.37 6.46 -51.93 -0.34 0.03 16
36 H 0.04 1.11 5.75 -51.93 -0.30 0.81 16
37 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16
LS Contribution 284.26 15.07 4.28 4.28
Total: -1.00 -31.68 284.26 -6.14 -37.83
By element:
Atomic # 1 Polarization: 9.09 SS G_CDS: -5.21 Total: 3.88 kcal
Atomic # 6 Polarization: -24.74 SS G_CDS: -0.54 Total: -25.28 kcal
Atomic # 7 Polarization: -27.66 SS G_CDS: 0.74 Total: -26.93 kcal
Atomic # 8 Polarization: -10.73 SS G_CDS: -0.40 Total: -11.13 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -31.68 -6.14 -37.83 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307749228.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.476 kcal
(2) G-P(sol) polarization free energy of solvation -31.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.160 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.304 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds