Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00099 * 2 1 4 4 C 1.50704 * 119.99910 * 179.97438 * 2 1 3 5 5 H 1.08998 * 110.01681 * 147.98453 * 4 2 1 6 6 C 1.54268 * 110.03022 * 26.59309 * 4 2 1 7 7 C 1.54895 * 104.19221 * 217.10385 * 6 4 2 8 8 C 1.54892 * 102.74821 * 37.94183 * 7 6 4 9 9 H 1.08998 * 110.48562 * 203.37496 * 8 7 6 10 10 O 1.42908 * 110.48366 * 80.86927 * 8 7 6 11 11 C 1.53874 * 110.02992 * 269.42546 * 4 2 1 12 12 C 1.53007 * 110.02952 * 238.56735 * 11 4 2 13 13 C 1.52992 * 110.03571 * 359.97438 * 11 4 2 14 14 C 1.50704 * 109.47080 * 178.77061 * 13 11 4 15 15 H 1.07995 * 120.00367 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99995 * 180.02562 * 14 13 11 17 17 N 1.31509 * 119.99669 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99916 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47216 * 89.99668 * 18 16 14 20 20 H 1.48510 * 109.47003 * 209.99856 * 18 16 14 21 21 H 1.48495 * 109.47131 * 329.99456 * 18 16 14 22 22 H 1.08001 * 120.00298 * 186.38446 * 1 2 3 23 23 H 1.08004 * 120.00005 * 6.37270 * 1 2 3 24 24 H 1.08998 * 109.46867 * 275.08340 * 3 2 1 25 25 H 1.09002 * 109.46703 * 35.08730 * 3 2 1 26 26 H 1.08997 * 109.46886 * 155.08492 * 3 2 1 27 27 H 1.08998 * 110.48800 * 98.42820 * 6 4 2 28 28 H 1.08996 * 110.60082 * 335.83289 * 6 4 2 29 29 H 1.08998 * 110.75878 * 279.62627 * 7 6 4 30 30 H 1.08998 * 110.91122 * 156.32762 * 7 6 4 31 31 H 0.96699 * 113.99871 * 63.24376 * 10 8 7 32 32 H 1.08995 * 109.47147 * 301.38425 * 12 11 4 33 33 H 1.08993 * 109.46898 * 61.38465 * 12 11 4 34 34 H 1.08997 * 109.47050 * 181.38348 * 12 11 4 35 35 H 1.09001 * 109.47573 * 298.76837 * 13 11 4 36 36 H 1.09002 * 109.47262 * 58.77064 * 13 11 4 37 37 H 0.97006 * 120.00084 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 3.0021 -1.1943 -0.5424 6 6 1.2053 -2.4110 -0.6477 7 6 1.5231 -3.6767 0.1868 8 6 1.6396 -3.1166 1.6262 9 1 2.2458 -3.7781 2.2450 10 8 0.3432 -2.9438 2.2021 11 6 2.3396 -1.7537 1.4464 12 6 3.8457 -1.9046 1.6697 13 6 1.7632 -0.7340 2.4306 14 6 2.0140 -1.2004 3.8416 15 1 2.5322 -2.1313 4.0185 16 6 1.5809 -0.4392 4.9066 17 7 0.9495 0.6940 4.6910 18 14 1.8912 -1.0178 6.6554 19 1 3.1956 -0.4884 7.1278 20 1 0.8062 -0.5227 7.5403 21 1 1.9181 -2.5021 6.6883 22 1 -0.5401 -0.9295 0.1040 23 1 -0.5400 0.9296 -0.1038 24 1 2.1663 1.6652 -1.0236 25 1 1.5169 2.0402 0.5907 26 1 3.0523 1.1537 0.4329 27 1 1.4946 -2.5577 -1.6883 28 1 0.1458 -2.1645 -0.5784 29 1 2.4652 -4.1228 -0.1315 30 1 0.7117 -4.4014 0.1188 31 1 -0.1522 -3.7673 2.3098 32 1 4.2464 -2.6328 0.9646 33 1 4.3340 -0.9425 1.5153 34 1 4.0295 -2.2459 2.6884 35 1 2.2442 0.2319 2.2764 36 1 0.6902 -0.6360 2.2657 37 1 0.6451 1.2298 5.4403 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307749228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -44.304322 kcal Electronic energy + Delta-G solvation = -16838.798801 eV Core-core repulsion = 14388.045804 eV Total energy + Delta-G solvation = -2450.752997 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46302 -35.33829 -33.24067 -32.69686 -31.01762 -27.18712 -26.83504 -26.11540 -24.46165 -22.28360 -20.71227 -18.58145 -16.68475 -16.39632 -15.75327 -15.19884 -14.78030 -14.11752 -14.00911 -12.99187 -12.83881 -12.39790 -12.15709 -12.09062 -11.74437 -11.51937 -11.27564 -11.14936 -10.96664 -10.80029 -10.73509 -10.29942 -10.15574 -10.06298 -9.84118 -9.55018 -9.04565 -8.80554 -8.61449 -8.16405 -7.93345 -5.76387 -3.72659 3.04348 3.41466 3.47934 3.50505 4.62653 4.98352 5.13523 5.18025 5.45639 5.60079 5.70318 5.77958 5.94450 5.98881 6.03882 6.15736 6.18472 6.22569 6.24807 6.26035 6.43673 6.54773 6.63035 6.65272 6.67222 6.74166 6.89457 7.10582 7.33600 7.45744 7.69246 7.93421 8.15625 8.32830 8.59246 8.70346 9.31395 9.85910 11.35453 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.027410 B = 0.011143 C = 0.009600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.282384 B = 2512.217603 C = 2916.029226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.112 4.112 4 C -0.053 4.053 5 H 0.065 0.935 6 C -0.119 4.119 7 C -0.162 4.162 8 C 0.122 3.878 9 H 0.046 0.954 10 O -0.526 6.526 11 C -0.047 4.047 12 C -0.127 4.127 13 C 0.046 3.954 14 C -0.487 4.487 15 H 0.047 0.953 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.881 3.119 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.278 1.278 22 H 0.102 0.898 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.352 0.648 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.013 0.987 36 H 0.039 0.961 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -5.583 -10.048 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.092 4.092 3 C -0.169 4.169 4 C -0.071 4.071 5 H 0.083 0.917 6 C -0.156 4.156 7 C -0.200 4.200 8 C 0.062 3.938 9 H 0.064 0.936 10 O -0.328 6.328 11 C -0.047 4.047 12 C -0.184 4.184 13 C 0.009 3.991 14 C -0.526 4.526 15 H 0.066 0.934 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.710 3.290 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.203 1.203 22 H 0.120 0.880 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.195 0.805 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.605 -4.793 -9.952 11.162 hybrid contribution 0.008 -0.909 1.160 1.474 sum 1.613 -5.702 -8.792 10.603 Atomic orbital electron populations 1.23520 0.95520 1.01198 1.03898 1.21348 0.95177 0.94740 0.97939 1.20830 1.00611 0.95240 1.00212 1.20989 0.97115 0.92195 0.96802 0.91655 1.22570 1.01116 0.94437 0.97471 1.23271 1.00732 0.97462 0.98495 1.22384 0.85043 0.96486 0.89849 0.93603 1.86897 1.28406 1.33330 1.84153 1.21262 0.94152 0.95363 0.93891 1.21799 0.95116 1.00214 1.01263 1.19128 0.97299 0.91535 0.91136 1.21175 1.34710 1.05293 0.91416 0.93447 1.24913 0.95985 0.95320 0.98309 1.69966 1.40139 1.13485 1.30356 0.86785 0.77471 0.78732 0.86037 1.21192 1.21588 1.20294 0.88001 0.89666 0.92997 0.91778 0.91943 0.92909 0.90355 0.91696 0.92190 0.80452 0.94997 0.93097 0.91737 0.96850 0.94268 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.82 11.98 29.01 0.35 -3.47 16 2 C -0.09 -1.71 3.43 -101.06 -0.35 -2.06 16 3 C -0.11 -1.95 9.05 36.01 0.33 -1.62 16 4 C -0.05 -0.94 2.81 -90.65 -0.25 -1.19 16 5 H 0.07 1.09 7.67 -51.93 -0.40 0.69 16 6 C -0.12 -1.86 6.15 -25.07 -0.15 -2.01 16 7 C -0.16 -2.42 6.62 -24.73 -0.16 -2.59 16 8 C 0.12 2.28 2.95 -25.07 -0.07 2.21 16 9 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 10 O -0.53 -10.73 11.24 -35.23 -0.40 -11.13 16 11 C -0.05 -0.95 0.64 -153.39 -0.10 -1.05 16 12 C -0.13 -2.40 7.89 37.16 0.29 -2.10 16 13 C 0.05 1.17 2.42 -27.88 -0.07 1.10 16 14 C -0.49 -13.72 7.36 -34.44 -0.25 -13.97 16 15 H 0.05 1.31 6.49 -52.49 -0.34 0.97 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 18 Si 0.88 22.36 29.54 -169.99 -5.02 17.34 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 22 H 0.10 1.91 5.81 -52.49 -0.31 1.60 16 23 H 0.08 1.50 8.05 -52.48 -0.42 1.07 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 26 H 0.06 1.10 7.79 -51.93 -0.40 0.70 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.27 5.21 -51.93 -0.27 1.00 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.35 5.42 9.12 45.56 0.42 5.83 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.31 6.66 -51.93 -0.35 0.96 16 35 H 0.01 0.37 6.46 -51.93 -0.34 0.03 16 36 H 0.04 1.11 5.75 -51.93 -0.30 0.81 16 37 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 284.26 15.07 4.28 4.28 Total: -1.00 -31.68 284.26 -6.14 -37.83 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.21 Total: 3.88 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -0.54 Total: -25.28 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.74 Total: -26.93 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.40 Total: -11.13 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.68 -6.14 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307749228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.476 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds