Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00099 * 2 1 4 4 C 1.50704 * 119.99910 * 179.97438 * 2 1 3 5 5 H 1.08998 * 110.01681 * 147.98453 * 4 2 1 6 6 C 1.54268 * 110.03022 * 26.59309 * 4 2 1 7 7 C 1.54895 * 104.19221 * 217.10385 * 6 4 2 8 8 C 1.54892 * 102.74821 * 37.94183 * 7 6 4 9 9 H 1.08998 * 110.48562 * 203.37496 * 8 7 6 10 10 O 1.42908 * 110.48366 * 80.86927 * 8 7 6 11 11 C 1.53874 * 110.02992 * 269.42546 * 4 2 1 12 12 C 1.53007 * 110.02952 * 238.56735 * 11 4 2 13 13 C 1.52992 * 110.03571 * 359.97438 * 11 4 2 14 14 C 1.50704 * 109.47080 * 178.77061 * 13 11 4 15 15 H 1.07995 * 120.00367 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99995 * 180.02562 * 14 13 11 17 17 N 1.31509 * 119.99669 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99916 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47216 * 89.99668 * 18 16 14 20 20 H 1.48510 * 109.47003 * 209.99856 * 18 16 14 21 21 H 1.48495 * 109.47131 * 329.99456 * 18 16 14 22 22 H 1.08001 * 120.00298 * 186.38446 * 1 2 3 23 23 H 1.08004 * 120.00005 * 6.37270 * 1 2 3 24 24 H 1.08998 * 109.46867 * 275.08340 * 3 2 1 25 25 H 1.09002 * 109.46703 * 35.08730 * 3 2 1 26 26 H 1.08997 * 109.46886 * 155.08492 * 3 2 1 27 27 H 1.08998 * 110.48800 * 98.42820 * 6 4 2 28 28 H 1.08996 * 110.60082 * 335.83289 * 6 4 2 29 29 H 1.08998 * 110.75878 * 279.62627 * 7 6 4 30 30 H 1.08998 * 110.91122 * 156.32762 * 7 6 4 31 31 H 0.96699 * 113.99871 * 63.24376 * 10 8 7 32 32 H 1.08995 * 109.47147 * 301.38425 * 12 11 4 33 33 H 1.08993 * 109.46898 * 61.38465 * 12 11 4 34 34 H 1.08997 * 109.47050 * 181.38348 * 12 11 4 35 35 H 1.09001 * 109.47573 * 298.76837 * 13 11 4 36 36 H 1.09002 * 109.47262 * 58.77064 * 13 11 4 37 37 H 0.97006 * 120.00084 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 3.0021 -1.1943 -0.5424 6 6 1.2053 -2.4110 -0.6477 7 6 1.5231 -3.6767 0.1868 8 6 1.6396 -3.1166 1.6262 9 1 2.2458 -3.7781 2.2450 10 8 0.3432 -2.9438 2.2021 11 6 2.3396 -1.7537 1.4464 12 6 3.8457 -1.9046 1.6697 13 6 1.7632 -0.7340 2.4306 14 6 2.0140 -1.2004 3.8416 15 1 2.5322 -2.1313 4.0185 16 6 1.5809 -0.4392 4.9066 17 7 0.9495 0.6940 4.6910 18 14 1.8912 -1.0178 6.6554 19 1 3.1956 -0.4884 7.1278 20 1 0.8062 -0.5227 7.5403 21 1 1.9181 -2.5021 6.6883 22 1 -0.5401 -0.9295 0.1040 23 1 -0.5400 0.9296 -0.1038 24 1 2.1663 1.6652 -1.0236 25 1 1.5169 2.0402 0.5907 26 1 3.0523 1.1537 0.4329 27 1 1.4946 -2.5577 -1.6883 28 1 0.1458 -2.1645 -0.5784 29 1 2.4652 -4.1228 -0.1315 30 1 0.7117 -4.4014 0.1188 31 1 -0.1522 -3.7673 2.3098 32 1 4.2464 -2.6328 0.9646 33 1 4.3340 -0.9425 1.5153 34 1 4.0295 -2.2459 2.6884 35 1 2.2442 0.2319 2.2764 36 1 0.6902 -0.6360 2.2657 37 1 0.6451 1.2298 5.4403 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307749228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -64.875558 kcal Electronic energy + Delta-G solvation = -16839.690837 eV Core-core repulsion = 14388.045804 eV Total energy + Delta-G solvation = -2451.645033 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93069 -36.82317 -35.15342 -34.30010 -32.71603 -28.80108 -28.50889 -27.58535 -26.10703 -24.17973 -22.01294 -20.15325 -18.40539 -18.08403 -17.46752 -16.72874 -16.42643 -15.89551 -15.47191 -14.59396 -14.31292 -14.04001 -13.84803 -13.66512 -13.31571 -12.99069 -12.93344 -12.76073 -12.65600 -12.49779 -12.31965 -12.15491 -11.88498 -11.56580 -11.31497 -11.10330 -10.69906 -10.51572 -10.44424 -10.33670 -9.46643 -8.00643 -6.02837 1.39024 1.39979 1.49520 1.57622 2.49484 3.33320 3.59809 3.81924 3.87462 4.10856 4.28658 4.40441 4.59000 4.63140 4.69993 4.76834 4.77005 4.85951 4.88654 4.98282 5.13102 5.15149 5.18766 5.22774 5.25379 5.32725 5.51549 5.55800 5.62887 5.77291 5.97975 6.03802 6.20421 6.26421 6.51269 7.12278 7.30729 7.59802 9.11327 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.027410 B = 0.011143 C = 0.009600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.282384 B = 2512.217603 C = 2916.029226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.103 4.103 3 C -0.110 4.110 4 C -0.053 4.053 5 H 0.083 0.917 6 C -0.116 4.116 7 C -0.146 4.146 8 C 0.115 3.885 9 H 0.042 0.958 10 O -0.559 6.559 11 C -0.053 4.053 12 C -0.123 4.123 13 C 0.062 3.938 14 C -0.490 4.490 15 H 0.049 0.951 16 C -0.006 4.006 17 N -0.938 5.938 18 Si 0.945 3.055 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.268 1.268 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.371 0.629 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.043 0.957 35 H -0.017 1.017 36 H 0.006 0.994 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 -7.449 -11.133 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.103 4.103 3 C -0.167 4.167 4 C -0.071 4.071 5 H 0.101 0.899 6 C -0.153 4.153 7 C -0.184 4.184 8 C 0.056 3.944 9 H 0.060 0.940 10 O -0.364 6.364 11 C -0.053 4.053 12 C -0.181 4.181 13 C 0.025 3.975 14 C -0.528 4.528 15 H 0.067 0.933 16 C -0.201 4.201 17 N -0.581 5.581 18 Si 0.772 3.228 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.192 1.192 22 H 0.117 0.883 23 H 0.105 0.895 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.218 0.782 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.001 0.999 36 H 0.025 0.975 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.509 -6.688 -11.042 13.151 hybrid contribution -0.283 -0.306 1.500 1.557 sum 2.226 -6.994 -9.542 12.039 Atomic orbital electron populations 1.23589 0.95858 1.01274 1.04467 1.21638 0.95416 0.95782 0.97454 1.20810 0.99603 0.94520 1.01749 1.21024 0.98325 0.92361 0.95421 0.89902 1.22552 1.00070 0.93706 0.98944 1.23176 1.02746 0.97429 0.95019 1.22459 0.84165 0.95436 0.92328 0.93957 1.86839 1.29412 1.35414 1.84755 1.21255 0.94962 0.94977 0.94108 1.21749 0.94249 1.00972 1.01082 1.18832 0.95166 0.91777 0.91708 1.21569 1.33478 1.04912 0.92857 0.93271 1.25751 0.96172 0.95566 1.02654 1.70119 1.41717 1.14862 1.31380 0.85751 0.77375 0.78658 0.81017 1.20410 1.21670 1.19227 0.88259 0.89462 0.89768 0.93801 0.92665 0.90111 0.91424 0.89458 0.90089 0.78249 0.91275 0.93618 0.93744 0.99862 0.97540 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.11 11.98 67.78 0.81 -7.29 16 2 C -0.10 -3.80 3.43 -16.48 -0.06 -3.85 16 3 C -0.11 -3.83 9.05 71.24 0.64 -3.19 16 4 C -0.05 -1.79 2.81 -10.81 -0.03 -1.82 16 5 H 0.08 2.49 7.67 -2.39 -0.02 2.47 16 6 C -0.12 -3.25 6.15 31.67 0.19 -3.05 16 7 C -0.15 -3.81 6.62 31.89 0.21 -3.60 16 8 C 0.12 4.10 2.95 31.67 0.09 4.19 16 9 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 10 O -0.56 -22.50 11.24 -148.98 -1.67 -24.17 16 11 C -0.05 -2.10 0.64 -51.46 -0.03 -2.13 16 12 C -0.12 -4.47 7.89 71.98 0.57 -3.90 16 13 C 0.06 3.24 2.42 29.85 0.07 3.32 16 14 C -0.49 -27.93 7.36 25.60 0.19 -27.74 16 15 H 0.05 2.73 6.49 -2.91 -0.02 2.71 16 16 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 17 N -0.94 -59.40 13.29 21.45 0.28 -59.11 16 18 Si 0.95 46.40 29.54 68.60 2.03 48.43 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 22 H 0.10 3.76 5.81 -2.91 -0.02 3.74 16 23 H 0.09 3.14 8.05 -2.91 -0.02 3.12 16 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.04 1.66 8.10 -2.39 -0.02 1.65 16 26 H 0.05 1.97 7.79 -2.39 -0.02 1.95 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.07 2.06 5.21 -2.39 -0.01 2.05 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.37 11.04 9.12 -74.06 -0.68 10.36 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.75 6.66 -2.39 -0.02 1.74 16 35 H -0.02 -0.97 6.46 -2.39 -0.02 -0.98 16 36 H 0.01 0.37 5.75 -2.39 -0.01 0.36 16 37 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -69.25 284.26 4.13 -65.12 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.37 Total: 18.71 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 3.13 Total: -48.97 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.28 Total: -59.11 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -1.67 Total: -24.17 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -69.25 4.13 -65.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307749228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.240 kcal (2) G-P(sol) polarization free energy of solvation -69.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds