Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48500 * 109.47036 * 269.99988 * 3 2 1 5 5 H 1.48498 * 109.47527 * 30.00111 * 3 2 1 6 6 H 1.48506 * 109.46799 * 150.00237 * 3 2 1 7 7 C 1.37871 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99817 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00195 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47246 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47348 * 179.97438 * 10 9 7 12 12 C 1.46893 * 111.00335 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47492 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47088 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47158 * 179.97438 * 14 13 12 16 16 C 1.48221 * 111.00247 * 170.00122 * 15 14 13 17 17 C 1.51125 * 105.44007 * 144.85390 * 16 15 14 18 18 C 1.31118 * 109.36885 * 343.14410 * 17 16 15 19 19 C 1.48226 * 110.99914 * 283.64385 * 15 14 13 20 20 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47443 * 59.99912 * 9 7 2 22 22 H 1.09000 * 109.46935 * 299.99275 * 9 7 2 23 23 H 1.09003 * 109.47303 * 59.99134 * 10 9 7 24 24 H 1.09005 * 109.47122 * 299.99630 * 10 9 7 25 25 H 1.00903 * 111.00016 * 303.95439 * 11 10 9 26 26 H 1.08997 * 109.47404 * 59.99707 * 12 11 10 27 27 H 1.09011 * 109.47058 * 299.99880 * 12 11 10 28 28 H 1.08997 * 109.46943 * 59.99538 * 13 12 11 29 29 H 1.08997 * 109.47005 * 299.99902 * 13 12 11 30 30 H 1.09005 * 109.47080 * 60.00294 * 14 13 12 31 31 H 1.08997 * 109.47390 * 300.00000 * 14 13 12 32 32 H 1.09002 * 110.26794 * 263.87454 * 16 15 14 33 33 H 1.09003 * 110.26777 * 25.83869 * 16 15 14 34 34 H 1.07997 * 125.26823 * 163.07536 * 17 16 15 35 35 H 1.07997 * 125.24482 * 179.97438 * 18 17 16 36 36 H 1.09000 * 110.27046 * 334.06789 * 19 15 14 37 37 H 1.09002 * 110.27137 * 96.03479 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0014 11 7 5.4905 -2.6365 -0.0014 12 6 6.0170 -4.0079 -0.0021 13 6 7.5465 -3.9671 -0.0028 14 6 8.0947 -5.3955 -0.0029 15 7 9.5632 -5.3563 -0.0042 16 6 10.1308 -6.7044 0.2359 17 6 11.3884 -6.7661 -0.5999 18 6 11.3624 -5.8093 -1.4960 19 6 10.0844 -5.0162 -1.3495 20 1 -0.4851 0.8400 0.0004 21 1 3.8745 -0.6808 0.8905 22 1 3.8752 -0.6797 -0.8895 23 1 3.6584 -3.1494 -0.8920 24 1 3.6579 -3.1513 0.8880 25 1 5.8521 -2.1096 -0.7823 26 1 5.6675 -4.5308 -0.8923 27 1 5.6675 -4.5317 0.8877 28 1 7.8964 -3.4440 0.8871 29 1 7.8956 -3.4435 -0.8928 30 1 7.7449 -5.9189 -0.8928 31 1 7.7456 -5.9187 0.8872 32 1 10.3723 -6.8298 1.2914 33 1 9.4269 -7.4728 -0.0837 34 1 12.1842 -7.4857 -0.4768 35 1 12.1344 -5.6187 -2.2268 36 1 9.3681 -5.3092 -2.1171 37 1 10.2916 -3.9481 -1.4153 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392783683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = 21.032901 kcal Electronic energy + Delta-G solvation = -14617.462535 eV Core-core repulsion = 12201.835524 eV Total energy + Delta-G solvation = -2415.627011 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.70885 -36.56165 -34.07512 -32.68391 -30.84075 -28.87067 -28.51590 -25.10935 -23.21886 -21.67751 -21.15532 -20.22859 -19.51320 -16.79031 -16.66531 -15.93127 -15.53398 -14.46111 -14.33239 -13.98151 -13.66997 -13.51887 -13.07415 -12.84112 -12.58539 -12.46242 -11.98387 -11.59563 -11.51960 -11.33729 -11.24591 -10.96473 -10.68427 -10.03574 -9.83918 -9.80296 -9.68771 -9.20951 -8.57402 -8.51868 -7.91508 -6.02675 -4.01057 1.82243 3.33975 3.41423 3.48094 3.66858 4.35376 4.40211 4.48366 4.69109 4.87442 5.07893 5.17914 5.21587 5.27004 5.30837 5.32093 5.39278 5.49743 5.56927 5.67034 5.79003 6.02725 6.14414 6.21086 6.25028 6.30994 6.36823 6.59879 6.75014 6.79331 7.16076 7.39999 7.64175 7.78191 7.93157 8.55023 9.01253 9.59787 11.10678 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.072161 B = 0.003556 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.926265 B = 7872.793930 C = 8109.215471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.695 5.695 12 C 0.060 3.940 13 C -0.110 4.110 14 C 0.045 3.955 15 N -0.503 5.503 16 C 0.051 3.949 17 C -0.172 4.172 18 C -0.168 4.168 19 C 0.050 3.950 20 H 0.263 0.737 21 H 0.026 0.974 22 H 0.009 0.991 23 H 0.020 0.980 24 H 0.064 0.936 25 H 0.334 0.666 26 H 0.021 0.979 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.058 0.942 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.755 -12.586 -2.431 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.325 5.325 12 C -0.070 4.070 13 C -0.148 4.148 14 C -0.083 4.083 15 N -0.227 5.227 16 C -0.077 4.077 17 C -0.190 4.190 18 C -0.187 4.187 19 C -0.077 4.077 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.027 0.973 23 H 0.039 0.961 24 H 0.083 0.917 25 H 0.151 0.849 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 21.757 -12.002 -1.306 24.883 hybrid contribution -0.137 -0.025 -1.621 1.627 sum 21.620 -12.027 -2.927 24.913 Atomic orbital electron populations 1.69916 1.06337 1.26925 1.51193 1.25013 0.94743 0.99252 0.94471 0.86737 0.80531 0.83367 0.78453 1.20405 1.21427 1.18697 1.21083 0.89428 0.94517 1.50974 0.91141 1.19551 0.96629 0.91881 0.96735 1.21957 0.84064 1.00033 0.99430 1.60563 1.09885 1.12408 1.49657 1.21875 0.93830 0.91211 1.00126 1.21487 0.94716 0.95337 1.03261 1.22378 0.86579 0.98218 1.01159 1.65614 1.08198 1.23211 1.25703 1.22077 0.94124 0.90733 1.00758 1.23616 0.98442 0.99434 0.97541 1.23659 0.98255 0.97203 0.99549 1.22149 0.94178 1.01019 0.90394 0.92734 0.95609 0.97318 0.96125 0.91739 0.84878 0.96041 0.91267 0.90177 0.92300 0.94404 0.90404 0.89539 0.92564 0.84785 0.84813 0.92429 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 10 C 0.07 1.52 5.62 -3.82 -0.02 1.50 16 11 N -0.69 -12.02 6.50 -113.78 -0.74 -12.76 16 12 C 0.06 0.84 5.69 -3.82 -0.02 0.82 16 13 C -0.11 -1.31 5.61 -26.73 -0.15 -1.46 16 14 C 0.05 0.47 4.66 -3.82 -0.02 0.45 16 15 N -0.50 -5.28 5.52 -234.68 -1.29 -6.57 16 16 C 0.05 0.44 6.62 -4.04 -0.03 0.42 16 17 C -0.17 -1.35 10.96 -35.85 -0.39 -1.74 16 18 C -0.17 -1.36 10.95 -35.85 -0.39 -1.75 16 19 C 0.05 0.47 6.08 -4.04 -0.02 0.45 16 20 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 21 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 22 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.33 5.45 8.73 -39.29 -0.34 5.10 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.69 7.76 -51.93 -0.40 0.28 16 30 H 0.04 0.38 7.64 -51.93 -0.40 -0.02 16 31 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.06 0.53 7.48 -51.93 -0.39 0.14 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 301.47 15.07 4.54 4.54 Total: -1.00 -31.36 301.47 -9.50 -40.86 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.51 Total: -0.66 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -1.60 Total: -15.36 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -1.26 Total: -46.89 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.36 -9.50 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392783683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.888 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds