Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48500 * 109.47036 * 269.99988 * 3 2 1 5 5 H 1.48498 * 109.47527 * 30.00111 * 3 2 1 6 6 H 1.48506 * 109.46799 * 150.00237 * 3 2 1 7 7 C 1.37871 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99817 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00195 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47246 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47348 * 179.97438 * 10 9 7 12 12 C 1.46893 * 111.00335 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47492 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47088 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47158 * 179.97438 * 14 13 12 16 16 C 1.48221 * 111.00247 * 170.00122 * 15 14 13 17 17 C 1.51125 * 105.44007 * 144.85390 * 16 15 14 18 18 C 1.31118 * 109.36885 * 343.14410 * 17 16 15 19 19 C 1.48226 * 110.99914 * 283.64385 * 15 14 13 20 20 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47443 * 59.99912 * 9 7 2 22 22 H 1.09000 * 109.46935 * 299.99275 * 9 7 2 23 23 H 1.09003 * 109.47303 * 59.99134 * 10 9 7 24 24 H 1.09005 * 109.47122 * 299.99630 * 10 9 7 25 25 H 1.00903 * 111.00016 * 303.95439 * 11 10 9 26 26 H 1.08997 * 109.47404 * 59.99707 * 12 11 10 27 27 H 1.09011 * 109.47058 * 299.99880 * 12 11 10 28 28 H 1.08997 * 109.46943 * 59.99538 * 13 12 11 29 29 H 1.08997 * 109.47005 * 299.99902 * 13 12 11 30 30 H 1.09005 * 109.47080 * 60.00294 * 14 13 12 31 31 H 1.08997 * 109.47390 * 300.00000 * 14 13 12 32 32 H 1.09002 * 110.26794 * 263.87454 * 16 15 14 33 33 H 1.09003 * 110.26777 * 25.83869 * 16 15 14 34 34 H 1.07997 * 125.26823 * 163.07536 * 17 16 15 35 35 H 1.07997 * 125.24482 * 179.97438 * 18 17 16 36 36 H 1.09000 * 110.27046 * 334.06789 * 19 15 14 37 37 H 1.09002 * 110.27137 * 96.03479 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0014 11 7 5.4905 -2.6365 -0.0014 12 6 6.0170 -4.0079 -0.0021 13 6 7.5465 -3.9671 -0.0028 14 6 8.0947 -5.3955 -0.0029 15 7 9.5632 -5.3563 -0.0042 16 6 10.1308 -6.7044 0.2359 17 6 11.3884 -6.7661 -0.5999 18 6 11.3624 -5.8093 -1.4960 19 6 10.0844 -5.0162 -1.3495 20 1 -0.4851 0.8400 0.0004 21 1 3.8745 -0.6808 0.8905 22 1 3.8752 -0.6797 -0.8895 23 1 3.6584 -3.1494 -0.8920 24 1 3.6579 -3.1513 0.8880 25 1 5.8521 -2.1096 -0.7823 26 1 5.6675 -4.5308 -0.8923 27 1 5.6675 -4.5317 0.8877 28 1 7.8964 -3.4440 0.8871 29 1 7.8956 -3.4435 -0.8928 30 1 7.7449 -5.9189 -0.8928 31 1 7.7456 -5.9187 0.8872 32 1 10.3723 -6.8298 1.2914 33 1 9.4269 -7.4728 -0.0837 34 1 12.1842 -7.4857 -0.4768 35 1 12.1344 -5.6187 -2.2268 36 1 9.3681 -5.3092 -2.1171 37 1 10.2916 -3.9481 -1.4153 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392783683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = -1.595390 kcal Electronic energy + Delta-G solvation = -14618.443771 eV Core-core repulsion = 12201.835524 eV Total energy + Delta-G solvation = -2416.608247 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40765 -37.92339 -35.51369 -34.38693 -32.31150 -30.16210 -29.28807 -26.57810 -24.61591 -22.74529 -22.30685 -21.70066 -20.16807 -18.96437 -17.45740 -17.00273 -16.54421 -16.28462 -15.59171 -15.23395 -15.01750 -14.63417 -14.38988 -14.29456 -13.69373 -13.38067 -13.18611 -13.00059 -12.79331 -12.48391 -12.39561 -12.13718 -11.92825 -11.78440 -11.57954 -11.50153 -11.42995 -10.77523 -10.45640 -9.33755 -9.26961 -8.30697 -6.35655 1.24193 1.36758 1.39630 1.52990 2.36883 2.87089 3.04820 3.39070 3.75149 3.78223 4.02523 4.23777 4.31229 4.39781 4.47450 4.50792 4.52542 4.59500 4.63080 4.68753 4.72164 4.74772 4.94669 5.02161 5.17829 5.24053 5.34874 5.44769 5.47999 5.62491 5.62849 5.96678 5.98153 6.14437 6.24671 6.53067 6.73077 7.29491 8.86014 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.072161 B = 0.003556 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.926265 B = 7872.793930 C = 8109.215471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.536 4.536 8 H 0.031 0.969 9 C -0.005 4.005 10 C 0.086 3.914 11 N -0.697 5.697 12 C 0.062 3.938 13 C -0.097 4.097 14 C 0.051 3.949 15 N -0.521 5.521 16 C 0.045 3.955 17 C -0.173 4.173 18 C -0.177 4.177 19 C 0.045 3.955 20 H 0.267 0.733 21 H 0.023 0.977 22 H 0.019 0.981 23 H 0.017 0.983 24 H 0.055 0.945 25 H 0.342 0.658 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.057 0.943 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.154 -12.385 -2.786 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.042 4.042 10 C -0.043 4.043 11 N -0.328 5.328 12 C -0.068 4.068 13 C -0.135 4.135 14 C -0.078 4.078 15 N -0.245 5.245 16 C -0.082 4.082 17 C -0.191 4.191 18 C -0.195 4.195 19 C -0.082 4.082 20 H 0.076 0.924 21 H 0.041 0.959 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.160 0.840 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.075 0.925 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 24.180 -11.823 -1.666 26.967 hybrid contribution -0.921 -0.179 -1.499 1.768 sum 23.259 -12.003 -3.165 26.364 Atomic orbital electron populations 1.70064 1.08325 1.28294 1.52487 1.26025 0.95657 1.03657 0.93914 0.85577 0.79418 0.77890 0.79260 1.18972 1.20906 1.17141 1.21425 0.91982 0.93249 1.50806 0.95018 1.19440 0.93524 0.94465 0.96815 1.21634 0.86373 0.97402 0.98891 1.60470 1.07455 1.14618 1.50238 1.21919 0.95134 0.89335 1.00396 1.21328 0.92962 0.96415 1.02804 1.22272 0.86903 0.97039 1.01549 1.65574 1.08013 1.24443 1.26483 1.22159 0.94761 0.90012 1.01256 1.23837 0.98472 0.99797 0.97000 1.23830 0.98191 0.97145 1.00318 1.22194 0.94980 1.01107 0.89917 0.92388 0.95906 0.96258 0.96502 0.92647 0.83989 0.95343 0.91373 0.91366 0.91953 0.93941 0.90097 0.89254 0.92092 0.82675 0.82989 0.92465 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.59 13.96 21.44 0.30 -60.30 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.96 45.19 27.47 68.60 1.88 47.07 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 7 C -0.54 -31.75 9.66 25.60 0.25 -31.51 16 8 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 9 C 0.00 -0.22 4.30 29.85 0.13 -0.10 16 10 C 0.09 3.52 5.62 86.30 0.49 4.00 16 11 N -0.70 -23.03 6.50 -513.88 -3.34 -26.37 16 12 C 0.06 1.64 5.69 86.31 0.49 2.13 16 13 C -0.10 -2.15 5.61 30.60 0.17 -1.98 16 14 C 0.05 0.98 4.66 86.30 0.40 1.38 16 15 N -0.52 -10.14 5.52 -896.38 -4.95 -15.08 16 16 C 0.05 0.72 6.62 85.44 0.57 1.28 16 17 C -0.17 -2.33 10.96 25.66 0.28 -2.05 16 18 C -0.18 -2.50 10.95 25.66 0.28 -2.22 16 19 C 0.05 0.78 6.08 85.43 0.52 1.30 16 20 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 21 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 22 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 23 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 25 H 0.34 10.45 8.73 -89.69 -0.78 9.66 16 26 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.34 7.76 -2.39 -0.02 1.33 16 30 H 0.04 0.78 7.64 -2.38 -0.02 0.76 16 31 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 0.90 7.79 -2.39 -0.02 0.88 16 34 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 35 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.06 0.97 7.48 -2.39 -0.02 0.95 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -66.93 301.47 -1.89 -68.82 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.18 Total: 12.88 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 4.04 Total: -27.03 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -7.99 Total: -101.75 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -66.93 -1.89 -68.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392783683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.222 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds